Acta Crystallographica Section E
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Section E
CRYSTALLOGRAPHIC COMMUNICATIONS
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CRYSTALLOGRAPHIC
COMMUNICATIONS
Volume 70
|
Part 9
|
September 2014
|
Pages 1047–1048
https://doi.org/10.1107/S1600536814018789
Open
access
ISSN: 2056-9890
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CRYSTALLOGRAPHIC
COMMUNICATIONS
Volume 70
|
Part 9
|
September 2014
|
Pages 1047–1048
https://doi.org/10.1107/S1600536814018789
Open
access
ISSN: 2056-9890
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############################################################################## # # # This CIF contains the data in a paper accepted for publication in # # Acta Crystallographica Section E. It conforms to the requirements of # # Notes for Authors for Acta Crystallographica Section E, and has been # # peer reviewed under the auspices of the IUCr Commission on Journals. # # # # Full details of the Crystallographic Information File format # # are given in the paper "The Crystallographic Information File (CIF): # # a New Standard Archive File for Crystallography" by S. R. Hall, F. H. # # Allen and I. D. Brown [Acta Cryst. (1991), A47, 655-685]. # # # # The current version of the core CIF dictionary is obtainable from # # ftp://ftp.iucr.org/pub/cif_core.dic. # # # # Software is freely available for graphical display of the structure(s) # # in this CIF. For information consult the CIF software page # # http://www.iucr.org/resources/cif/software. # # # # This file may be used for bona fide research purposes within the # # scientific community so long as proper attribution is given to the journal # # article from which it was obtained. # # # ############################################################################## data_global _audit_creation_method SHELXL-2014 _journal_date_recd_electronic 2014-08-17 _journal_date_accepted 2014-08-18 _journal_name_full 'Acta Crystallographica, Section E' _journal_year 2014 _journal_volume 70 _journal_issue 9 _journal_page_first o1047 _journal_page_last o1048 _journal_paper_category HO _journal_paper_doi 10.1107/S1600536814018789 _journal_coeditor_code SU2774 _publ_contact_author_name 'Dr G. Lyubartseva' _publ_contact_author_address ; Department of Biochemistry and Chemistry Southern Arkansas University Magnolia AR 71753 USA ; _publ_contact_author_email 'GannaLyubartseva@saumag.edu' _publ_contact_author_fax '870 235 4936' _publ_contact_author_phone '870 235 4279' loop_ _publ_author_name _publ_author_address 'Ganna Lyubartseva' ; Department of Biochemistry and Chemistry Southern Arkansas University Magnolia AR 71753 USA ; 'Parkin, Sean' ; Department of Chemistry University of Kentucky Lexington KY 40506 USA ; 'Coleman, Morgan D.' ; Department of Biochemistry and Chemistry Southern Arkansas University Magnolia AR 71753 USA ; 'Mallik, Uma Prasad' ; Department of Biochemistry and Chemistry Southern Arkansas University Magnolia AR 71753 USA ; data_I _database_code_depnum_ccdc_archive 'CCDC 1019968' _audit_creation_method SHELXL-2014 _chemical_name_systematic ; 1-Methoxy-2,2,2-tris(pyrazol-1-yl)ethane ; _chemical_name_common ? _chemical_formula_moiety 'C12 H14 N6 O' _chemical_formula_sum 'C12 H14 N6 O' _chemical_formula_iupac 'C12 H14 N6 O' _chemical_formula_weight 258.29 _chemical_melting_point ? _space_group_crystal_system monoclinic _space_group_name_H-M_alt 'C c' _space_group_name_Hall 'C -2yc' loop_ _space_group_symop_operation_xyz 'x, y, z' 'x, -y, z+1/2' 'x+1/2, y+1/2, z' 'x+1/2, -y+1/2, z+1/2' _cell_length_a 12.5828(3) _cell_length_b 12.3847(3) _cell_length_c 8.4807(2) _cell_angle_alpha 90 _cell_angle_beta 102.5635(11) _cell_angle_gamma 90 _cell_volume 1289.94(5) _cell_formula_units_Z 4 _cell_measurement_reflns_used 1549 _cell_measurement_theta_min 1.00 _cell_measurement_theta_max 27.48 _cell_measurement_temperature 90.0(2) _exptl_crystal_description 'block' _exptl_crystal_colour colourless _exptl_crystal_size_max 0.280 _exptl_crystal_size_mid 0.200 _exptl_crystal_size_min 0.160 _exptl_crystal_density_diffrn 1.330 _exptl_crystal_density_meas ? _exptl_crystal_density_method ? _exptl_crystal_F_000 544 _exptl_absorpt_coefficient_mu 0.092 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(
SADABS
; Sheldrick, 1996)' _exptl_absorpt_correction_T_min 0.749 _exptl_absorpt_correction_T_max 0.942 _exptl_special_details ; The crystal was mounted with polyisobutene oil on the tip of a fine glass fibre, which was fastened in a copper mounting pin with electrical solder. It was placed directly into the cold gas stream of a liquid nitrogen based cryostat, according to published methods (Hope, 1994; Parkin & Hope, 1998). Diffraction data were collected with the crystal at 90 K, which is standard practice in this laboratory for the majority of flash-cooled crystals. ; _diffrn_ambient_temperature 90 _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_measurement_device_type 'Nonius KappaCCD' _diffrn_measurement_method '\f and \w scans at fixed \c = 55\%' _diffrn_detector_area_resol_mean 9.1 _diffrn_reflns_number 11397 _diffrn_reflns_av_R_equivalents 0.0319 _diffrn_reflns_theta_min 2.335 _diffrn_reflns_theta_max 27.479 _diffrn_reflns_theta_full 25.242 _diffrn_measured_fraction_theta_max 1.000 _diffrn_measured_fraction_theta_full 1.000 _diffrn_reflns_limit_h_min -16 _diffrn_reflns_limit_h_max 16 _diffrn_reflns_limit_k_min -16 _diffrn_reflns_limit_k_max 16 _diffrn_reflns_limit_l_min -10 _diffrn_reflns_limit_l_max 11 _refine_special_details ; Refinement progress was checked using
PLATON
(Spek, 2009) and by an
R
-tensor (Parkin, 2000). The final model was further checked with the IUCr utility
checkCIF
. ; _reflns_number_total 2934 _reflns_number_gt 2386 _reflns_threshold_expression I>2\s(I) _refine_ls_structure_factor_coef Fsqd _refine_ls_matrix_type full _refine_ls_R_factor_all 0.0581 _refine_ls_R_factor_gt 0.0419 _refine_ls_wR_factor_gt 0.0932 _refine_ls_wR_factor_ref 0.1024 _refine_ls_goodness_of_fit_ref 1.103 _refine_ls_restrained_S_all 1.102 _refine_ls_number_reflns 2934 _refine_ls_number_parameters 174 _refine_ls_number_restraints 2 _refine_ls_hydrogen_treatment constr _refine_ls_weighting_scheme calc _refine_ls_weighting_details 'w=1/[\s^2^(Fo^2^)+(0.0453P)^2^+0.5917P] where P=(Fo^2^+2Fc^2^)/3' _atom_sites_solution_hydrogens difmap _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_diff_density_max 0.232 _refine_diff_density_min -0.178 _refine_ls_extinction_method '
SHELXL2014
(Sheldrick, 2008)' _refine_ls_extinction_coef 0.0127(19) _refine_ls_extinction_expression 'Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^' _refine_ls_abs_structure_details ; Refined as a perfect (
i.e.
50:50) inversion twin. ; _refine_ls_abs_structure_Flack . loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source 'C' 'C' 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' 'H' 'H' 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' 'N' 'N' 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' 'O' 'O' 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' _computing_data_collection '
COLLECT
(Nonius, 1998)' _computing_cell_refinement '
SCALEPACK
(Otwinowski & Minor, 1997)' _computing_data_reduction '
DENZO-SMN
(Otwinowski & Minor, 1997)' _computing_structure_solution '
SHELXS97
(Sheldrick, 2008)' _computing_structure_refinement '
SHELXL2014
(Sheldrick, 2008)' _computing_molecular_graphics '
XP in SHELXTL
(Sheldrick, 2008)' _computing_publication_material '
SHELXL2014
(Sheldrick, 2008) and PLATON (Spek, 2009)' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group O O1 0.34875(17) 0.16856(16) 0.5089(3) 0.0305(5) Uani d 1 . . N N1 0.62903(19) 0.25690(19) 0.5191(3) 0.0229(5) Uani d 1 . . N N2 0.6299(2) 0.2508(2) 0.3598(3) 0.0291(6) Uani d 1 . . N N3 0.4892(2) 0.35743(18) 0.5996(3) 0.0255(6) Uani d 1 . . N N4 0.5617(2) 0.4320(2) 0.6770(4) 0.0378(7) Uani d 1 . . N N5 0.5520(2) 0.1924(2) 0.7270(3) 0.0236(5) Uani d 1 . . N N6 0.5898(2) 0.0891(2) 0.7266(3) 0.0296(6) Uani d 1 . . C C1 0.5280(2) 0.2497(2) 0.5740(3) 0.0212(6) Uani d 1 . . C C2 0.7343(3) 0.2658(3) 0.3557(4) 0.0336(7) Uani d 1 . . H H2A 0.7610 0.2658 0.2591 0.040 Uiso calc 1 . . C C3 0.8001(2) 0.2816(2) 0.5100(4) 0.0318(7) Uani d 1 . . H H3A 0.8765 0.2933 0.5376 0.038 Uiso calc 1 . . C C4 0.7295(3) 0.2762(2) 0.6118(4) 0.0303(7) Uani d 1 . . H H4A 0.7475 0.2845 0.7259 0.036 Uiso calc 1 . . C C5 0.5010(3) 0.5170(3) 0.6921(5) 0.0426(9) Uani d 1 . . H H5A 0.5290 0.5831 0.7406 0.051 Uiso calc 1 . . C C6 0.3900(3) 0.4977(3) 0.6277(5) 0.0394(8) Uani d 1 . . H H6A 0.3311 0.5461 0.6252 0.047 Uiso calc 1 . . C C7 0.3848(3) 0.3954(3) 0.5699(4) 0.0307(7) Uani d 1 . . H H7A 0.3210 0.3574 0.5187 0.037 Uiso calc 1 . . C C8 0.6077(3) 0.0592(3) 0.8804(4) 0.0330(7) Uani d 1 . . H H8A 0.6344 -0.0098 0.9187 0.040 Uiso calc 1 . . C C9 0.5825(3) 0.1410(3) 0.9791(4) 0.0379(8) Uani d 1 . . H H9A 0.5884 0.1385 1.0927 0.045 Uiso calc 1 . . C C10 0.5474(2) 0.2258(3) 0.8775(4) 0.0324(7) Uani d 1 . . H H10A 0.5244 0.2946 0.9067 0.039 Uiso calc 1 . . C C11 0.4437(2) 0.1869(2) 0.4498(4) 0.0252(6) Uani d 1 . . H H11A 0.4249 0.2284 0.3478 0.030 Uiso calc 1 . . H H11B 0.4751 0.1169 0.4266 0.030 Uiso calc 1 . . C C12 0.3184(3) 0.0580(3) 0.5101(5) 0.0384(8) Uani d 1 . . H H12A 0.2517 0.0515 0.5511 0.058 Uiso calc 1 . . H H12B 0.3770 0.0171 0.5800 0.058 Uiso calc 1 . . H H12C 0.3057 0.0291 0.4000 0.058 Uiso calc 1 . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 0.0238(11) 0.0263(11) 0.0426(13) -0.0028(9) 0.0099(9) -0.0036(9) N1 0.0226(13) 0.0254(12) 0.0214(13) 0.0009(10) 0.0062(10) 0.0004(10) N2 0.0335(15) 0.0325(14) 0.0239(13) 0.0045(11) 0.0115(11) 0.0029(11) N3 0.0233(12) 0.0213(12) 0.0324(13) -0.0003(10) 0.0072(10) -0.0024(11) N4 0.0282(14) 0.0256(14) 0.0600(19) -0.0051(12) 0.0103(13) -0.0140(13) N5 0.0247(12) 0.0237(12) 0.0227(12) -0.0018(10) 0.0058(10) -0.0001(10) N6 0.0359(15) 0.0213(13) 0.0294(14) 0.0003(10) 0.0025(11) 0.0033(10) C1 0.0197(14) 0.0219(14) 0.0233(15) 0.0004(10) 0.0074(12) -0.0010(11) C2 0.0357(17) 0.0306(17) 0.0400(19) 0.0029(14) 0.0203(15) 0.0051(14) C3 0.0222(15) 0.0285(15) 0.048(2) 0.0000(12) 0.0143(15) 0.0000(14) C4 0.0257(16) 0.0316(17) 0.0334(17) 0.0020(13) 0.0057(13) -0.0024(13) C5 0.0370(18) 0.0272(18) 0.064(2) -0.0032(14) 0.0130(17) -0.0149(16) C6 0.0308(17) 0.0274(17) 0.061(2) 0.0062(14) 0.0116(16) -0.0077(15) C7 0.0249(15) 0.0287(16) 0.0374(17) 0.0024(12) 0.0042(13) -0.0008(13) C8 0.0248(16) 0.0364(18) 0.0353(18) -0.0083(14) 0.0009(13) 0.0113(15) C9 0.0300(17) 0.060(2) 0.0246(16) -0.0035(16) 0.0075(13) 0.0056(15) C10 0.0260(16) 0.0457(19) 0.0282(16) -0.0028(14) 0.0122(13) -0.0058(14) C11 0.0214(15) 0.0256(14) 0.0280(15) 0.0008(11) 0.0041(12) -0.0027(12) C12 0.038(2) 0.0282(17) 0.051(2) -0.0059(14) 0.0126(17) 0.0031(16) _geom_special_details ; All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. ; loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag O1 C11 . 1.411(3) ? O1 C12 . 1.423(4) ? N1 N2 . 1.356(3) ? N1 C4 . 1.357(4) ? N1 C1 . 1.448(3) ? N2 C2 . 1.335(4) ? N3 N4 . 1.363(4) ? N3 C7 . 1.365(4) ? N3 C1 . 1.454(3) ? N4 C5 . 1.323(4) ? N5 C10 . 1.354(4) ? N5 N6 . 1.364(3) ? N5 C1 . 1.452(4) ? N6 C8 . 1.327(4) ? C1 C11 . 1.534(4) ? C2 C3 . 1.402(5) ? C2 H2A . 0.9500 ? C3 C4 . 1.369(4) ? C3 H3A . 0.9500 ? C4 H4A . 0.9500 ? C5 C6 . 1.405(5) ? C5 H5A . 0.9500 ? C6 C7 . 1.355(5) ? C6 H6A . 0.9500 ? C7 H7A . 0.9500 ? C8 C9 . 1.394(5) ? C8 H8A . 0.9500 ? C9 C10 . 1.369(5) ? C9 H9A . 0.9500 ? C10 H10A . 0.9500 ? C11 H11A . 0.9900 ? C11 H11B . 0.9900 ? C12 H12A . 0.9800 ? C12 H12B . 0.9800 ? C12 H12C . 0.9800 ? loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag C11 O1 C12 . . 114.0(2) ? N2 N1 C4 . . 112.3(2) ? N2 N1 C1 . . 121.0(2) ? C4 N1 C1 . . 126.7(2) ? C2 N2 N1 . . 103.8(3) ? N4 N3 C7 . . 111.9(2) ? N4 N3 C1 . . 118.8(2) ? C7 N3 C1 . . 129.0(2) ? C5 N4 N3 . . 104.2(3) ? C10 N5 N6 . . 112.0(3) ? C10 N5 C1 . . 130.5(3) ? N6 N5 C1 . . 117.4(2) ? C8 N6 N5 . . 104.1(3) ? N1 C1 N5 . . 106.9(2) ? N1 C1 N3 . . 109.8(2) ? N5 C1 N3 . . 109.0(2) ? N1 C1 C11 . . 109.6(2) ? N5 C1 C11 . . 110.1(2) ? N3 C1 C11 . . 111.3(2) ? N2 C2 C3 . . 112.3(3) ? N2 C2 H2A . . 123.8 ? C3 C2 H2A . . 123.8 ? C4 C3 C2 . . 104.4(3) ? C4 C3 H3A . . 127.8 ? C2 C3 H3A . . 127.8 ? N1 C4 C3 . . 107.1(3) ? N1 C4 H4A . . 126.4 ? C3 C4 H4A . . 126.4 ? N4 C5 C6 . . 112.0(3) ? N4 C5 H5A . . 124.0 ? C6 C5 H5A . . 124.0 ? C7 C6 C5 . . 105.3(3) ? C7 C6 H6A . . 127.3 ? C5 C6 H6A . . 127.3 ? C6 C7 N3 . . 106.7(3) ? C6 C7 H7A . . 126.7 ? N3 C7 H7A . . 126.7 ? N6 C8 C9 . . 112.0(3) ? N6 C8 H8A . . 124.0 ? C9 C8 H8A . . 124.0 ? C10 C9 C8 . . 105.3(3) ? C10 C9 H9A . . 127.4 ? C8 C9 H9A . . 127.4 ? N5 C10 C9 . . 106.6(3) ? N5 C10 H10A . . 126.7 ? C9 C10 H10A . . 126.7 ? O1 C11 C1 . . 110.5(2) ? O1 C11 H11A . . 109.5 ? C1 C11 H11A . . 109.5 ? O1 C11 H11B . . 109.5 ? C1 C11 H11B . . 109.5 ? H11A C11 H11B . . 108.1 ? O1 C12 H12A . . 109.5 ? O1 C12 H12B . . 109.5 ? H12A C12 H12B . . 109.5 ? O1 C12 H12C . . 109.5 ? H12A C12 H12C . . 109.5 ? H12B C12 H12C . . 109.5 ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_2 _geom_torsion_site_symmetry_3 _geom_torsion_site_symmetry_4 _geom_torsion _geom_torsion_publ_flag C4 N1 N2 C2 . . . . 0.6(3) ? C1 N1 N2 C2 . . . . 177.0(3) ? C7 N3 N4 C5 . . . . -1.0(4) ? C1 N3 N4 C5 . . . . -175.4(3) ? C10 N5 N6 C8 . . . . 0.5(3) ? C1 N5 N6 C8 . . . . 178.0(2) ? N2 N1 C1 N5 . . . . 144.6(2) ? C4 N1 C1 N5 . . . . -39.6(4) ? N2 N1 C1 N3 . . . . -97.3(3) ? C4 N1 C1 N3 . . . . 78.6(3) ? N2 N1 C1 C11 . . . . 25.2(3) ? C4 N1 C1 C11 . . . . -158.9(3) ? C10 N5 C1 N1 . . . . 115.6(3) ? N6 N5 C1 N1 . . . . -61.3(3) ? C10 N5 C1 N3 . . . . -3.0(4) ? N6 N5 C1 N3 . . . . -179.9(2) ? C10 N5 C1 C11 . . . . -125.4(3) ? N6 N5 C1 C11 . . . . 57.7(3) ? N4 N3 C1 N1 . . . . -43.9(3) ? C7 N3 C1 N1 . . . . 142.8(3) ? N4 N3 C1 N5 . . . . 72.9(3) ? C7 N3 C1 N5 . . . . -100.4(3) ? N4 N3 C1 C11 . . . . -165.4(3) ? C7 N3 C1 C11 . . . . 21.3(4) ? N1 N2 C2 C3 . . . . -0.1(3) ? N2 C2 C3 C4 . . . . -0.4(4) ? N2 N1 C4 C3 . . . . -0.9(3) ? C1 N1 C4 C3 . . . . -177.1(3) ? C2 C3 C4 N1 . . . . 0.8(3) ? N3 N4 C5 C6 . . . . 0.9(4) ? N4 C5 C6 C7 . . . . -0.5(5) ? C5 C6 C7 N3 . . . . -0.2(4) ? N4 N3 C7 C6 . . . . 0.8(4) ? C1 N3 C7 C6 . . . . 174.4(3) ? N5 N6 C8 C9 . . . . -0.2(3) ? N6 C8 C9 C10 . . . . -0.2(4) ? N6 N5 C10 C9 . . . . -0.6(3) ? C1 N5 C10 C9 . . . . -177.7(3) ? C8 C9 C10 N5 . . . . 0.4(3) ? C12 O1 C11 C1 . . . . -124.7(3) ? N1 C1 C11 O1 . . . . 173.5(2) ? N5 C1 C11 O1 . . . . 56.2(3) ? N3 C1 C11 O1 . . . . -64.8(3) ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA C5 H5A N2 2_565 0.95 2.51 3.453(4) 171 C9 H9A N2 1_556 0.95 2.61 3.433(4) 145 C4 H4A O1 4_555 0.95 2.53 3.444(4) 162