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CRYSTALLOGRAPHIC
COMMUNICATIONS

Volume 71 | Part 12 | December 2015 | Pages 1536–1538
https://doi.org/10.1107/S2056989015021507
Open open access

access

ISSN: 2056-9890

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CRYSTALLOGRAPHIC
COMMUNICATIONS

Volume 71 | Part 12 | December 2015 | Pages 1536–1538
https://doi.org/10.1107/S2056989015021507
Open open access

access

ISSN: 2056-9890

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data_I
_cell_length_a 10.3526(2)
_cell_length_b 7.26120(10)
_cell_length_c 11.9198(2)
_cell_angle_alpha 90
_cell_angle_beta 108.1210(6)
_cell_angle_gamma 90
_cell_volume 851.60(2)
_cell_formula_units_Z 2
_space_group_name_H-M_alt 'P 21'
_space_group_name_Hall 'P 2yb'
_space_group_crystal_system monoclinic

loop_
_space_group_symop_operation_xyz

'x, y, z'
 '-x, y+1/2, -z'
_chemical_name_systematic
;
(1aR,4E,7aS,8E,10aS,10bR)-1a,5-\
Dimethyl-8-[(pyrimidin-5-yl)methylidene]-2,3,6,7,7a,8,10a,10b-\
octahydrooxireno[2',3':9,10]cyclodeca[1,2-b]furan-9(1aH)-one
;
_chemical_name_common '(E)-13-(Pyrimidin-5-yl)parthenolide'
_chemical_formula_iupac 'C19 H22 N2 O3'
_chemical_formula_moiety 'C19 H22 N2 O3'
_chemical_formula_sum 'C19 H22 N2 O3'
_chemical_formula_weight 326.38

loop_
_atom_site_type_symbol
_atom_site_label
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_u_iso_or_equiv
_atom_site_adp_type
_atom_site_calc_flag
_atom_site_occupancy
_atom_site_disorder_assembly
_atom_site_disorder_group

O O1 0.59428(12) 0.24072(19) 0.48957(10) 0.0228(3) Uani d 1 . .
 O O2 0.30633(12) 0.25486(17) 0.43887(10) 0.0195(3) Uani d 1 . .
 O O3 0.12397(13) 0.29255(19) 0.49855(11) 0.0266(3) Uani d 1 . .
 C C1 0.57679(17) 0.5285(2) 0.19945(14) 0.0185(4) Uani d 1 . .
 H H1A 0.5833 0.6439 0.2384 0.022 Uiso calc 1 . .
 C C2 0.70386(17) 0.4134(3) 0.23289(16) 0.0208(4) Uani d 1 . .
 H H2A 0.7809 0.4881 0.2257 0.025 Uiso calc 1 . .
 H H2B 0.6915 0.3076 0.1781 0.025 Uiso calc 1 . .
 C C3 0.73676(17) 0.3417(3) 0.36116(15) 0.0202(4) Uani d 1 . .
 H H3A 0.8146 0.2554 0.3792 0.024 Uiso calc 1 . .
 H H3B 0.7615 0.4460 0.4173 0.024 Uiso calc 1 . .
 C C4 0.61322(17) 0.2447(2) 0.37345(14) 0.0178(4) Uani d 1 . .
 C C5 0.51035(16) 0.3615(2) 0.40010(13) 0.0165(3) Uani d 1 . .
 H H5A 0.5353 0.4948 0.4118 0.020 Uiso calc 1 . .
 C C6 0.35977(16) 0.3252(2) 0.34753(14) 0.0159(3) Uani d 1 . .
 H H6A 0.3445 0.2321 0.2829 0.019 Uiso calc 1 . .
 C C7 0.27894(16) 0.5036(2) 0.29783(13) 0.0149(3) Uani d 1 . .
 H H7A 0.3396 0.6113 0.3292 0.018 Uiso calc 1 . .
 C C8 0.22800(16) 0.5184(3) 0.16174(14) 0.0176(4) Uani d 1 . .
 H H8A 0.1434 0.5923 0.1376 0.021 Uiso calc 1 . .
 H H8B 0.2058 0.3936 0.1278 0.021 Uiso calc 1 . .
 C C9 0.33322(17) 0.6078(3) 0.11062(14) 0.0185(4) Uani d 1 . .
 H H9A 0.2884 0.6358 0.0261 0.022 Uiso calc 1 . .
 H H9B 0.3638 0.7258 0.1519 0.022 Uiso calc 1 . .
 C C10 0.45591(17) 0.4887(2) 0.12176(14) 0.0179(4) Uani d 1 . .
 C C11 0.16862(16) 0.5027(2) 0.35605(14) 0.0159(3) Uani d 1 . .
 C C12 0.19100(17) 0.3425(3) 0.43718(14) 0.0184(4) Uani d 1 . .
 C C13 0.06867(17) 0.6212(3) 0.35248(14) 0.0179(4) Uani d 1 . .
 H H13A 0.0096 0.5872 0.3961 0.021 Uiso calc 1 . .
 C C14 0.42876(19) 0.3267(3) 0.03864(16) 0.0269(4) Uani d 1 . .
 H H14A 0.5140 0.2609 0.0473 0.040 Uiso calc 1 . .
 H H14B 0.3908 0.3705 -0.0428 0.040 Uiso calc 1 . .
 H H14C 0.3639 0.2434 0.0573 0.040 Uiso calc 1 . .
 C C15 0.57578(18) 0.0643(2) 0.30934(18) 0.0239(4) Uani d 1 . .
 H H15A 0.5012 0.0072 0.3311 0.036 Uiso calc 1 . .
 H H15B 0.6548 -0.0179 0.3312 0.036 Uiso calc 1 . .
 H H15C 0.5470 0.0861 0.2240 0.036 Uiso calc 1 . .
 C C16 0.03901(16) 0.7977(2) 0.28928(14) 0.0180(4) Uani d 1 . .
 C C17 0.13568(18) 0.9097(3) 0.26601(18) 0.0244(4) Uani d 1 . .
 H H17A 0.2281 0.8719 0.2933 0.029 Uiso calc 1 . .
 N N18 0.10538(16) 1.0688(2) 0.20684(16) 0.0293(4) Uani d 1 . .
 C C19 -0.02533(19) 1.1156(3) 0.17269(17) 0.0252(4) Uani d 1 . .
 H H19A -0.0485 1.2265 0.1287 0.030 Uiso calc 1 . .
 N N20 -0.12697(15) 1.0248(2) 0.19312(14) 0.0256(4) Uani d 1 . .
 C C21 -0.09291(18) 0.8673(3) 0.25279(15) 0.0219(4) Uani d 1 . .
 H H21A -0.1621 0.7994 0.2713 0.026 Uiso calc 1 . .

loop_
_atom_site_aniso_label
_atom_site_aniso_u_11
_atom_site_aniso_u_22
_atom_site_aniso_u_33
_atom_site_aniso_u_12
_atom_site_aniso_u_13
_atom_site_aniso_u_23

O1 0.0188(6) 0.0306(7) 0.0176(6) 0.0061(5) 0.0035(5) 0.0092(5)
 O2 0.0187(6) 0.0200(6) 0.0221(6) 0.0038(5) 0.0098(5) 0.0064(5)
 O3 0.0242(6) 0.0305(8) 0.0303(7) 0.0031(6) 0.0162(5) 0.0097(6)
 C1 0.0218(8) 0.0163(8) 0.0197(8) -0.0006(7) 0.0100(7) 0.0024(7)
 C2 0.0184(8) 0.0208(9) 0.0254(9) -0.0018(7) 0.0101(7) -0.0001(7)
 C3 0.0157(8) 0.0216(9) 0.0228(8) 0.0016(7) 0.0053(6) -0.0004(7)
 C4 0.0163(8) 0.0184(8) 0.0174(8) 0.0036(7) 0.0031(6) 0.0040(7)
 C5 0.0175(8) 0.0173(8) 0.0141(7) 0.0020(7) 0.0043(6) 0.0031(6)
 C6 0.0173(8) 0.0162(8) 0.0154(7) 0.0002(6) 0.0068(6) 0.0012(6)
 C7 0.0155(7) 0.0147(8) 0.0142(7) -0.0011(6) 0.0041(6) -0.0008(6)
 C8 0.0172(8) 0.0201(8) 0.0143(8) 0.0005(7) 0.0034(6) 0.0003(7)
 C9 0.0209(8) 0.0195(8) 0.0147(7) 0.0018(7) 0.0051(6) 0.0044(7)
 C10 0.0221(8) 0.0190(9) 0.0150(7) 0.0003(7) 0.0092(7) 0.0026(7)
 C11 0.0153(7) 0.0170(8) 0.0143(7) -0.0021(7) 0.0031(6) -0.0010(7)
 C12 0.0166(8) 0.0206(9) 0.0187(8) 0.0004(7) 0.0065(6) 0.0014(7)
 C13 0.0144(8) 0.0213(9) 0.0175(8) -0.0011(7) 0.0044(6) -0.0018(7)
 C14 0.0258(9) 0.0321(11) 0.0219(8) 0.0041(8) 0.0061(7) -0.0061(8)
 C15 0.0206(8) 0.0177(9) 0.0346(10) 0.0023(7) 0.0105(8) 0.0005(7)
 C16 0.0175(8) 0.0190(9) 0.0161(7) 0.0009(7) 0.0032(6) -0.0044(7)
 C17 0.0156(8) 0.0189(9) 0.0350(10) 0.0005(7) 0.0024(8) 0.0019(8)
 N18 0.0209(8) 0.0216(9) 0.0409(10) -0.0014(6) 0.0030(7) 0.0062(7)
 C19 0.0240(9) 0.0183(9) 0.0288(9) 0.0021(8) 0.0016(7) 0.0019(8)
 N20 0.0206(8) 0.0232(8) 0.0304(8) 0.0042(6) 0.0043(6) 0.0003(7)
 C21 0.0194(8) 0.0219(9) 0.0253(9) 0.0026(7) 0.0084(7) -0.0024(7)

loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_site_symmetry_2
_geom_bond_distance
_geom_bond_publ_flag

O1 C5 . 1.444(2) ?
 O1 C4 . 1.457(2) ?
 O2 C12 . 1.348(2) ?
 O2 C6 . 1.4585(19) ?
 O3 C12 . 1.210(2) ?
 C1 C10 . 1.337(2) ?
 C1 C2 . 1.504(2) ?
 C1 H1A . 0.9500 ?
 C2 C3 . 1.549(2) ?
 C2 H2A . 0.9900 ?
 C2 H2B . 0.9900 ?
 C3 C4 . 1.507(2) ?
 C3 H3A . 0.9900 ?
 C3 H3B . 0.9900 ?
 C4 C5 . 1.471(2) ?
 C4 C15 . 1.505(3) ?
 C5 C6 . 1.511(2) ?
 C5 H5A . 1.0000 ?
 C6 C7 . 1.556(2) ?
 C6 H6A . 1.0000 ?
 C7 C11 . 1.510(2) ?
 C7 C8 . 1.546(2) ?
 C7 H7A . 1.0000 ?
 C8 C9 . 1.547(2) ?
 C8 H8A . 0.9900 ?
 C8 H8B . 0.9900 ?
 C9 C10 . 1.508(2) ?
 C9 H9A . 0.9900 ?
 C9 H9B . 0.9900 ?
 C10 C14 . 1.507(3) ?
 C11 C13 . 1.336(2) ?
 C11 C12 . 1.484(2) ?
 C13 C16 . 1.470(2) ?
 C13 H13A . 0.9500 ?
 C14 H14A . 0.9800 ?
 C14 H14B . 0.9800 ?
 C14 H14C . 0.9800 ?
 C15 H15A . 0.9800 ?
 C15 H15B . 0.9800 ?
 C15 H15C . 0.9800 ?
 C16 C17 . 1.383(3) ?
 C16 C21 . 1.393(2) ?
 C17 N18 . 1.339(2) ?
 C17 H17A . 0.9500 ?
 N18 C19 . 1.330(2) ?
 C19 N20 . 1.327(3) ?
 C19 H19A . 0.9500 ?
 N20 C21 . 1.335(3) ?
 C21 H21A . 0.9500 ?

_cifmol_cell_matrix [[10.3526,0,0],[4.4462e-16,7.2612,0],[-3.70735,9.56887e-16,11.3286]]
loop_ _cifmol_atom_site_type_symbol _cifmol_atom_site_id _cifmol_atom_site_cartn_x _cifmol_atom_site_cartn_y _cifmol_atom_site_cartn_z _cifmol_atom_site_connected_sites _cifmol_atom_site_connected_sites_types _cifmol_atom_site_model_ids _cifmol_atom_site_disorder_assembly _cifmol_atom_site_disorder_group _cifmol_atom_site_occupancy
O O1_1_555 4.33733 1.74792 5.54614 C4_1_555,C5_1_555 . asu,cell1,cell555,mol . . 1
O O2_1_555 1.54427 1.85059 4.97178 C6_1_555,C12_1_555 . asu,cell1,cell555,mol . . 1
O O3_1_555 -0.564889 2.12426 5.64787 C12_1_555 . asu,cell1,cell555,mol . . 1
C C1_1_555 5.23184 3.83754 2.25949 H1A_1_555,C2_1_555,C10_1_555 . asu,cell1,cell555,mol . . 1
H H1A_1_555 5.15484 4.67549 2.70074 C1_1_555 . asu,cell1,cell555,mol . . 1
C C2_1_555 6.42338 3.00178 2.63832 C1_1_555,H2A_1_555,H2B_1_555,C3_1_555 . asu,cell1,cell555,mol . . 1
H H2A_1_555 7.2476 3.54419 2.55686 C2_1_555 . asu,cell1,cell555,mol . . 1
H H2B_1_555 6.49854 2.23355 2.01762 C2_1_555 . asu,cell1,cell555,mol . . 1
C C3_1_555 6.28843 2.48115 4.09144 C2_1_555,H3A_1_555,H3B_1_555,C4_1_555 . asu,cell1,cell555,mol . . 1
H H3A_1_555 7.0274 1.85451 4.2958 C3_1_555 . asu,cell1,cell555,mol . . 1
H H3B_1_555 6.33643 3.2385 4.72742 C3_1_555 . asu,cell1,cell555,mol . . 1
C C4_1_555 4.96391 1.77682 4.23067 O1_1_555,C3_1_555,C5_1_555,C15_1_555 . asu,cell1,cell555,mol . . 1
C C5_1_555 3.80014 2.62492 4.53257 O1_1_555,C4_1_555,H5A_1_555,C6_1_555 . asu,cell1,cell555,mol . . 1
H H5A_1_555 4.01506 3.59284 4.66512 C5_1_555 . asu,cell1,cell555,mol . . 1
C C6_1_555 2.43614 2.36134 3.93703 O2_1_555,C5_1_555,H6A_1_555,C7_1_555 . asu,cell1,cell555,mol . . 1
H H6A_1_555 2.51766 1.68532 3.20486 C6_1_555 . asu,cell1,cell555,mol . . 1
C C7_1_555 1.78359 3.65674 3.374 C6_1_555,H7A_1_555,C8_1_555,C11_1_555 . asu,cell1,cell555,mol . . 1
H H7A_1_555 2.29528 4.43877 3.72937 C7_1_555 . asu,cell1,cell555,mol . . 1
C C8_1_555 1.76077 3.76421 1.83229 C7_1_555,H8A_1_555,H8B_1_555,C9_1_555 . asu,cell1,cell555,mol . . 1
H H8A_1_555 0.974431 4.30081 1.55882 C8_1_555 . asu,cell1,cell555,mol . . 1
H H8B_1_555 1.65677 2.85801 1.44779 C8_1_555 . asu,cell1,cell555,mol . . 1
C C9_1_555 3.03959 4.41336 1.25317 C8_1_555,H9A_1_555,H9B_1_555,C10_1_555 . asu,cell1,cell555,mol . . 1
H H9A_1_555 2.88893 4.61667 0.295676 C9_1_555 . asu,cell1,cell555,mol . . 1
H H9B_1_555 3.20313 5.27018 1.72081 C9_1_555 . asu,cell1,cell555,mol . . 1
C C10_1_555 4.26845 3.54855 1.37937 C1_1_555,C9_1_555,C14_1_555 . asu,cell1,cell555,mol . . 1
C C11_1_555 0.425652 3.65021 4.03355 C7_1_555,C12_1_555,C13_1_555 . asu,cell1,cell555,mol . . 1
C C12_1_555 0.356566 2.48696 4.95264 O2_1_555,O3_1_555,C11_1_555 . asu,cell1,cell555,mol . . 1
C C13_1_555 -0.595855 4.51066 3.9931 C11_1_555,H13A_1_555,C16_1_555 . asu,cell1,cell555,mol . . 1
H H13A_1_555 -1.3691 4.26378 4.48726 C13_1_555 . asu,cell1,cell555,mol . . 1
C C14_1_555 4.29553 2.37223 0.437737 C10_1_555,H14A_1_555,H14B_1_555,H14C_1_555 . asu,cell1,cell555,mol . . 1
H H14A_1_555 5.14588 1.89445 0.535843 C14_1_555 . asu,cell1,cell555,mol . . 1
H H14B_1_555 4.20447 2.69027 -0.484864 C14_1_555 . asu,cell1,cell555,mol . . 1
H H14C_1_555 3.55488 1.76738 0.649129 C14_1_555 . asu,cell1,cell555,mol . . 1
C C15_1_555 4.81399 0.466895 3.50439 C4_1_555,H15A_1_555,H15B_1_555,H15C_1_555 . asu,cell1,cell555,mol . . 1
H H15A_1_555 3.96122 0.0522806 3.7509 C15_1_555 . asu,cell1,cell555,mol . . 1
H H15B_1_555 5.55101 -0.129975 3.75203 C15_1_555 . asu,cell1,cell555,mol . . 1
H H15C_1_555 4.83243 0.625189 2.53761 C15_1_555 . asu,cell1,cell555,mol . . 1
C C16_1_555 -0.668608 5.79226 3.27714 C13_1_555,C17_1_555,C21_1_555 . asu,cell1,cell555,mol . . 1
C C17_1_555 0.418448 6.60551 3.01352 C16_1_555,H17A_1_555,N18_1_555 . asu,cell1,cell555,mol . . 1
H H17A_1_555 1.27406 6.33104 3.32268 C17_1_555 . asu,cell1,cell555,mol . . 1
N N18_1_555 0.324128 7.76077 2.34321 C17_1_555,C19_1_555 . asu,cell1,cell555,mol . . 1
C C19_1_555 -0.902454 8.10059 1.95634 N18_1_555,H19A_1_555,N20_1_555 . asu,cell1,cell555,mol . . 1
H H19A_1_555 -0.979237 8.90586 1.45799 C19_1_555 . asu,cell1,cell555,mol . . 1
N N20_1_555 -2.03043 7.44128 2.18778 C19_1_555,C21_1_555 . asu,cell1,cell555,mol . . 1
C C21_1_555 -1.89904 6.29764 2.86376 C16_1_555,N20_1_555,H21A_1_555 . asu,cell1,cell555,mol . . 1
H H21A_1_555 -2.68396 5.8046 3.07345 C21_1_555 . asu,cell1,cell555,mol . . 1
O O1_2_555 -4.33733 5.37852 -5.54614 C4_2_555,C5_2_555,C4_2_464,C5_2_464 . cell555 . . 1
O O2_2_555 -1.54427 5.48119 -4.97178 C6_2_555,C12_2_555,C6_2_464,C12_2_464 . cell555 . . 1
O O3_2_555 0.564889 5.75486 -5.64787 C12_2_555,C12_2_464 . cell555 . . 1
C C1_2_555 -5.23184 7.46814 -2.25949 H1A_2_555,C2_2_555,C10_2_555,H1A_2_464,C2_2_464,C10_2_464 . cell555 . . 1
H H1A_2_555 -5.15484 8.30609 -2.70074 C1_2_555,C1_2_464 . cell555 . . 1
C C2_2_555 -6.42338 6.63238 -2.63832 C1_2_555,H2A_2_555,H2B_2_555,C3_2_555,C1_2_464,H2A_2_464,H2B_2_464,C3_2_464 . cell555 . . 1
H H2A_2_555 -7.2476 7.17479 -2.55686 C2_2_555,C2_2_464 . cell555 . . 1
H H2B_2_555 -6.49854 5.86415 -2.01762 C2_2_555,C2_2_464 . cell555 . . 1
C C3_2_555 -6.28843 6.11175 -4.09144 C2_2_555,H3A_2_555,H3B_2_555,C4_2_555,C2_2_464,H3A_2_464,H3B_2_464,C4_2_464 . cell555 . . 1
H H3A_2_555 -7.0274 5.48511 -4.2958 C3_2_555,C3_2_464 . cell555 . . 1
H H3B_2_555 -6.33643 6.8691 -4.72742 C3_2_555,C3_2_464 . cell555 . . 1
C C4_2_555 -4.96391 5.40742 -4.23067 O1_2_555,C3_2_555,C5_2_555,C15_2_555,O1_2_464,C3_2_464,C5_2_464,C15_2_464 . cell555 . . 1
C C5_2_555 -3.80014 6.25552 -4.53257 O1_2_555,C4_2_555,H5A_2_555,C6_2_555,O1_2_464,C4_2_464,H5A_2_464,C6_2_464 . cell555 . . 1
H H5A_2_555 -4.01506 7.22344 -4.66512 C5_2_555,C5_2_464 . cell555 . . 1
C C6_2_555 -2.43614 5.99194 -3.93703 O2_2_555,C5_2_555,H6A_2_555,C7_2_555,O2_2_464,C5_2_464,H6A_2_464,C7_2_464 . cell555 . . 1
H H6A_2_555 -2.51766 5.31592 -3.20486 C6_2_555,C6_2_464 . cell555 . . 1
C C7_2_555 -1.78359 7.28734 -3.374 C6_2_555,H7A_2_555,C8_2_555,C11_2_555,C6_2_464,H7A_2_464,C8_2_464,C11_2_464 . cell555 . . 1
H H7A_2_555 -2.29528 8.06937 -3.72937 C7_2_555,C7_2_464 . cell555 . . 1
C C8_2_555 -1.76077 7.39481 -1.83229 C7_2_555,H8A_2_555,H8B_2_555,C9_2_555,C7_2_464,H8A_2_464,H8B_2_464,C9_2_464 . cell555 . . 1
H H8A_2_555 -0.974431 7.93141 -1.55882 C8_2_555,C8_2_464 . cell555 . . 1
H H8B_2_555 -1.65677 6.48861 -1.44779 C8_2_555,C8_2_464 . cell555 . . 1
C C9_2_555 -3.03959 8.04396 -1.25317 C8_2_555,H9A_2_555,H9B_2_555,C10_2_555,C8_2_464,H9A_2_464,H9B_2_464,C10_2_464 . cell555 . . 1
H H9A_2_555 -2.88893 8.24727 -0.295676 C9_2_555,C9_2_464 . cell555 . . 1
H H9B_2_555 -3.20313 8.90078 -1.72081 C9_2_555,C9_2_464 . cell555 . . 1
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C C14_2_646 2.34972 -1.25837 10.8909 C10_2_646,H14A_2_646,H14B_2_646,H14C_2_646 . cell1 . . 1
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H H14B_2_646 2.44078 -0.940325 11.8135 C14_2_646 . cell1 . . 1
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H H15A_2_646 2.68403 -3.57832 7.5777 C15_2_646 . cell1 . . 1
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H H15C_2_646 1.81282 -3.00541 8.79099 C15_2_646 . cell1 . . 1
C C16_2_646 7.31385 2.16166 8.05146 C13_2_646,C17_2_646,C21_2_646 . cell1 . . 1
C C17_2_646 6.2268 2.97491 8.31508 C16_2_646,H17A_2_646,N18_2_646 . cell1 . . 1
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N N18_2_646 6.32112 4.13017 8.98539 C17_2_646,C19_2_646 . cell1 . . 1
C C19_2_646 7.5477 4.46999 9.37226 N18_2_646,H19A_2_646,N20_2_646 . cell1 . . 1
H H19A_2_646 7.62448 5.27526 9.87061 C19_2_646 . cell1 . . 1
N N20_2_646 8.67568 3.81068 9.14082 C19_2_646,C21_2_646 . cell1 . . 1
C C21_2_646 8.54429 2.66704 8.46484 C16_2_646,N20_2_646,H21A_2_646 . cell1 . . 1
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