Acta Crystallographica Section D
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STRUCTURAL BIOLOGY
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STRUCTURAL
BIOLOGY
Volume 75
|
Part 1
|
January 2019
|
Pages 32–40
https://doi.org/10.1107/S205979831801553X
Open
access
ISSN: 2059-7983
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STRUCTURAL
BIOLOGY
Volume 75
|
Part 1
|
January 2019
|
Pages 32–40
https://doi.org/10.1107/S205979831801553X
Open
access
ISSN: 2059-7983
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data_6DWT # _entry.id 6DWT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6DWT pdb_00006dwt 10.2210/pdb6dwt/pdb WWPDB D_1000235374 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6DWT _pdbx_database_status.recvd_initial_deposition_date 2018-06-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hou, C.' 1 ? 'Tsodikov, O.V.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country DK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_id_ASTM ABCRE6 _citation.journal_id_CSD 0766 _citation.journal_id_ISSN 0907-4449 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 75 _citation.language ? _citation.page_first 32 _citation.page_last ? _citation.title 'Utilizing guanine coordinated Zn2+ to determine DNA crystal structures by single-wavelength anomalous diffraction' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hou, C.' 1 ? primary 'Tsodikov, O.V.' 2 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6DWT _cell.details ? _cell.formula_units_Z ? _cell.length_a 44.255 _cell.length_a_esd ? _cell.length_b 44.255 _cell.length_b_esd ? _cell.length_c 23.597 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DWT _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*AP*GP*GP*CP*CP*TP*C)-3') ; 2427.605 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 13 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DA)(DG)(DG)(DC)(DC)(DT)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GAGGCCTC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DA n 1 3 DG n 1 4 DG n 1 5 DC n 1 6 DC n 1 7 DT n 1 8 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6DWT _struct_ref.pdbx_db_accession 6DWT _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6DWT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6DWT _struct_ref_seq.db_align_beg 9 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 16 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 9 _struct_ref_seq.pdbx_auth_seq_align_end 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6DWT _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.38 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 48.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '50 mM Hepes, pH 7.0, 20 mM MgCl2, 65% MPD' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-11-04 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6DWT _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.6 _reflns.d_resolution_low 50.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3322 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11.4 _reflns.pdbx_Rmerge_I_obs 0.053 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 66 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.63 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.255 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -0.42 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] -0.42 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.83 _refine.B_iso_max ? _refine.B_iso_mean 32.686 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.960 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6DWT _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.60 _refine.ls_d_res_low 30.00 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 3117 _refine.ls_number_reflns_R_free 146 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.80 _refine.ls_percent_reflns_R_free 4.5 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.18885 _refine.ls_R_factor_R_free 0.21918 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.18691 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 6DXJ _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.103 _refine.pdbx_overall_ESU_R_Free 0.085 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 5.113 _refine.overall_SU_ML 0.079 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 161 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 13 _refine_hist.number_atoms_total 175 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.011 0.011 180 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 90 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.560 1.156 276 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.767 3.000 212 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.073 0.200 24 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.022 0.020 96 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.004 0.020 42 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 4.427 3.258 180 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 4.433 3.253 179 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 5.557 4.942 276 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 5.221 31.118 231 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 5.034 31.018 230 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? 5.065 3.000 270 ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? 30.594 5.000 7 ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? 17.952 5.000 258 ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.600 _refine_ls_shell.d_res_low 1.641 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 5 _refine_ls_shell.number_reflns_R_work 231 _refine_ls_shell.percent_reflns_obs 97.52 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.185 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.115 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6DWT _struct.title 'Crystal structure of double-stranded DNA GAGGCCTC, crystals grown in Mg2+' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6DWT _struct_keywords.text 'nucleic acid, palindrome, mithramycin binding, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DC 8 OP1 ? ? ? 1_555 B MG . MG ? ? A DC 16 A MG 101 1_555 ? ? ? ? ? ? ? 2.708 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 9 A DC 16 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 9 A DC 16 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 9 A DC 16 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 A DT 7 N3 ? ? A DA 10 A DT 15 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 A DT 7 O4 ? ? A DA 10 A DT 15 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 11 A DC 14 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 11 A DC 14 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 11 A DC 14 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 12 A DC 13 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 12 A DC 13 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 12 A DC 13 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 13 A DG 12 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 13 A DG 12 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 13 A DG 12 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 14 A DG 11 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 14 A DG 11 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 14 A DG 11 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 N3 ? ? ? 1_555 A DA 2 N1 ? ? A DT 15 A DA 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 7 O4 ? ? ? 1_555 A DA 2 N6 ? ? A DT 15 A DA 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 16 A DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 16 A DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 16 A DG 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'binding site for residue MG A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 DT A 7 ? DT A 15 . ? 4_445 ? 2 AC1 3 DC A 8 ? DC A 16 . ? 4_445 ? 3 AC1 3 DC A 8 ? DC A 16 . ? 1_555 ? # _atom_sites.entry_id 6DWT _atom_sites.fract_transf_matrix[1][1] 0.022596 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022596 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.042378 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 3.354 -8.362 4.921 1.00 43.48 ? 9 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 4.752 -8.330 4.514 1.00 37.98 ? 9 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 5.175 -9.625 3.855 1.00 32.78 ? 9 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 5.051 -10.736 4.770 1.00 30.67 ? 9 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 4.388 -10.057 2.618 1.00 29.19 ? 9 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 4.850 -9.308 1.481 1.00 35.07 ? 9 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 4.681 -11.541 2.586 1.00 31.04 ? 9 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 4.604 -11.875 4.061 1.00 28.19 ? 9 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 3.239 -12.155 4.479 1.00 28.57 ? 9 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 2.416 -11.391 5.274 1.00 26.47 ? 9 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 1.263 -11.957 5.513 1.00 27.23 ? 9 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 1.337 -13.173 4.848 1.00 23.94 ? 9 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 0.410 -14.233 4.772 1.00 26.13 ? 9 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? -0.749 -14.295 5.240 1.00 26.32 ? 9 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 0.906 -15.286 4.017 1.00 24.08 ? 9 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 2.149 -15.337 3.439 1.00 25.84 ? 9 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 2.443 -16.456 2.764 1.00 29.24 ? 9 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 3.042 -14.375 3.538 1.00 28.76 ? 9 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 2.561 -13.315 4.219 1.00 26.79 ? 9 DG A C4 1 ATOM 20 P P . DA A 1 2 ? 3.875 -8.862 0.329 1.00 40.85 ? 10 DA A P 1 ATOM 21 O OP1 . DA A 1 2 ? 4.706 -8.122 -0.662 1.00 49.54 ? 10 DA A OP1 1 ATOM 22 O OP2 . DA A 1 2 ? 2.651 -8.233 0.919 1.00 46.53 ? 10 DA A OP2 1 ATOM 23 O "O5'" . DA A 1 2 ? 3.494 -10.217 -0.414 1.00 36.56 ? 10 DA A "O5'" 1 ATOM 24 C "C5'" . DA A 1 2 ? 4.423 -10.924 -1.238 1.00 42.02 ? 10 DA A "C5'" 1 ATOM 25 C "C4'" . DA A 1 2 ? 3.906 -12.307 -1.545 1.00 37.29 ? 10 DA A "C4'" 1 ATOM 26 O "O4'" . DA A 1 2 ? 3.664 -13.087 -0.347 1.00 38.32 ? 10 DA A "O4'" 1 ATOM 27 C "C3'" . DA A 1 2 ? 2.570 -12.340 -2.272 1.00 40.23 ? 10 DA A "C3'" 1 ATOM 28 O "O3'" . DA A 1 2 ? 2.781 -11.948 -3.622 1.00 46.14 ? 10 DA A "O3'" 1 ATOM 29 C "C2'" . DA A 1 2 ? 2.118 -13.763 -1.997 1.00 35.89 ? 10 DA A "C2'" 1 ATOM 30 C "C1'" . DA A 1 2 ? 2.529 -13.928 -0.536 1.00 37.01 ? 10 DA A "C1'" 1 ATOM 31 N N9 . DA A 1 2 ? 1.469 -13.487 0.370 1.00 35.00 ? 10 DA A N9 1 ATOM 32 C C8 . DA A 1 2 ? 1.271 -12.264 0.963 1.00 34.18 ? 10 DA A C8 1 ATOM 33 N N7 . DA A 1 2 ? 0.167 -12.191 1.663 1.00 33.72 ? 10 DA A N7 1 ATOM 34 C C5 . DA A 1 2 ? -0.433 -13.428 1.471 1.00 30.39 ? 10 DA A C5 1 ATOM 35 C C6 . DA A 1 2 ? -1.633 -13.982 1.957 1.00 28.04 ? 10 DA A C6 1 ATOM 36 N N6 . DA A 1 2 ? -2.494 -13.315 2.728 1.00 28.24 ? 10 DA A N6 1 ATOM 37 N N1 . DA A 1 2 ? -1.937 -15.244 1.589 1.00 30.39 ? 10 DA A N1 1 ATOM 38 C C2 . DA A 1 2 ? -1.074 -15.907 0.797 1.00 34.00 ? 10 DA A C2 1 ATOM 39 N N3 . DA A 1 2 ? 0.098 -15.498 0.296 1.00 33.61 ? 10 DA A N3 1 ATOM 40 C C4 . DA A 1 2 ? 0.359 -14.237 0.676 1.00 31.91 ? 10 DA A C4 1 ATOM 41 P P . DG A 1 3 ? 1.607 -11.299 -4.505 1.00 55.89 ? 11 DG A P 1 ATOM 42 O OP1 . DG A 1 3 ? 2.149 -11.033 -5.866 1.00 65.13 ? 11 DG A OP1 1 ATOM 43 O OP2 . DG A 1 3 ? 0.978 -10.177 -3.754 1.00 47.87 ? 11 DG A OP2 1 ATOM 44 O "O5'" . DG A 1 3 ? 0.507 -12.436 -4.524 1.00 49.36 ? 11 DG A "O5'" 1 ATOM 45 C "C5'" . DG A 1 3 ? 0.627 -13.537 -5.396 1.00 55.34 ? 11 DG A "C5'" 1 ATOM 46 C "C4'" . DG A 1 3 ? -0.443 -14.539 -5.048 1.00 42.39 ? 11 DG A "C4'" 1 ATOM 47 O "O4'" . DG A 1 3 ? -0.436 -14.856 -3.638 1.00 41.98 ? 11 DG A "O4'" 1 ATOM 48 C "C3'" . DG A 1 3 ? -1.876 -14.105 -5.303 1.00 44.30 ? 11 DG A "C3'" 1 ATOM 49 O "O3'" . DG A 1 3 ? -2.194 -14.173 -6.694 1.00 50.39 ? 11 DG A "O3'" 1 ATOM 50 C "C2'" . DG A 1 3 ? -2.588 -15.206 -4.558 1.00 43.66 ? 11 DG A "C2'" 1 ATOM 51 C "C1'" . DG A 1 3 ? -1.766 -15.255 -3.279 1.00 41.27 ? 11 DG A "C1'" 1 ATOM 52 N N9 . DG A 1 3 ? -2.309 -14.327 -2.283 1.00 35.95 ? 11 DG A N9 1 ATOM 53 C C8 . DG A 1 3 ? -1.897 -13.055 -1.958 1.00 32.94 ? 11 DG A C8 1 ATOM 54 N N7 . DG A 1 3 ? -2.675 -12.473 -1.087 1.00 29.34 ? 11 DG A N7 1 ATOM 55 C C5 . DG A 1 3 ? -3.648 -13.427 -0.808 1.00 29.46 ? 11 DG A C5 1 ATOM 56 C C6 . DG A 1 3 ? -4.768 -13.366 0.055 1.00 27.24 ? 11 DG A C6 1 ATOM 57 O O6 . DG A 1 3 ? -5.110 -12.454 0.776 1.00 28.57 ? 11 DG A O6 1 ATOM 58 N N1 . DG A 1 3 ? -5.530 -14.531 -0.001 1.00 23.95 ? 11 DG A N1 1 ATOM 59 C C2 . DG A 1 3 ? -5.278 -15.592 -0.835 1.00 27.02 ? 11 DG A C2 1 ATOM 60 N N2 . DG A 1 3 ? -6.134 -16.612 -0.778 1.00 29.00 ? 11 DG A N2 1 ATOM 61 N N3 . DG A 1 3 ? -4.229 -15.662 -1.641 1.00 29.77 ? 11 DG A N3 1 ATOM 62 C C4 . DG A 1 3 ? -3.478 -14.542 -1.593 1.00 30.50 ? 11 DG A C4 1 ATOM 63 P P . DG A 1 4 ? -3.365 -13.277 -7.362 1.00 46.94 ? 12 DG A P 1 ATOM 64 O OP1 . DG A 1 4 ? -3.305 -13.568 -8.817 1.00 66.44 ? 12 DG A OP1 1 ATOM 65 O OP2 . DG A 1 4 ? -3.273 -11.872 -6.847 1.00 52.42 ? 12 DG A OP2 1 ATOM 66 O "O5'" . DG A 1 4 ? -4.681 -13.948 -6.787 1.00 52.13 ? 12 DG A "O5'" 1 ATOM 67 C "C5'" . DG A 1 4 ? -4.939 -15.335 -7.069 1.00 45.79 ? 12 DG A "C5'" 1 ATOM 68 C "C4'" . DG A 1 4 ? -6.198 -15.787 -6.370 1.00 43.35 ? 12 DG A "C4'" 1 ATOM 69 O "O4'" . DG A 1 4 ? -6.019 -15.759 -4.925 1.00 40.54 ? 12 DG A "O4'" 1 ATOM 70 C "C3'" . DG A 1 4 ? -7.418 -14.912 -6.641 1.00 37.36 ? 12 DG A "C3'" 1 ATOM 71 O "O3'" . DG A 1 4 ? -8.091 -15.261 -7.863 1.00 35.84 ? 12 DG A "O3'" 1 ATOM 72 C "C2'" . DG A 1 4 ? -8.269 -15.202 -5.422 1.00 32.19 ? 12 DG A "C2'" 1 ATOM 73 C "C1'" . DG A 1 4 ? -7.234 -15.393 -4.298 1.00 32.89 ? 12 DG A "C1'" 1 ATOM 74 N N9 . DG A 1 4 ? -7.008 -14.179 -3.529 1.00 30.75 ? 12 DG A N9 1 ATOM 75 C C8 . DG A 1 4 ? -6.058 -13.208 -3.720 1.00 33.00 ? 12 DG A C8 1 ATOM 76 N N7 . DG A 1 4 ? -6.166 -12.211 -2.885 1.00 30.42 ? 12 DG A N7 1 ATOM 77 C C5 . DG A 1 4 ? -7.279 -12.529 -2.120 1.00 28.84 ? 12 DG A C5 1 ATOM 78 C C6 . DG A 1 4 ? -7.887 -11.825 -1.053 1.00 23.03 ? 12 DG A C6 1 ATOM 79 O O6 . DG A 1 4 ? -7.532 -10.741 -0.542 1.00 25.73 ? 12 DG A O6 1 ATOM 80 N N1 . DG A 1 4 ? -8.983 -12.520 -0.543 1.00 24.35 ? 12 DG A N1 1 ATOM 81 C C2 . DG A 1 4 ? -9.456 -13.718 -1.028 1.00 20.79 ? 12 DG A C2 1 ATOM 82 N N2 . DG A 1 4 ? -10.544 -14.205 -0.456 1.00 24.01 ? 12 DG A N2 1 ATOM 83 N N3 . DG A 1 4 ? -8.878 -14.395 -2.012 1.00 23.35 ? 12 DG A N3 1 ATOM 84 C C4 . DG A 1 4 ? -7.816 -13.736 -2.516 1.00 23.96 ? 12 DG A C4 1 ATOM 85 P P . DC A 1 5 ? -9.197 -14.340 -8.484 1.00 36.32 ? 13 DC A P 1 ATOM 86 O OP1 . DC A 1 5 ? -9.586 -15.002 -9.765 1.00 43.58 ? 13 DC A OP1 1 ATOM 87 O OP2 . DC A 1 5 ? -8.794 -12.913 -8.445 1.00 38.64 ? 13 DC A OP2 1 ATOM 88 O "O5'" . DC A 1 5 ? -10.396 -14.505 -7.461 1.00 39.05 ? 13 DC A "O5'" 1 ATOM 89 C "C5'" . DC A 1 5 ? -11.256 -13.411 -7.218 1.00 32.10 ? 13 DC A "C5'" 1 ATOM 90 C "C4'" . DC A 1 5 ? -12.152 -13.804 -6.072 1.00 30.25 ? 13 DC A "C4'" 1 ATOM 91 O "O4'" . DC A 1 5 ? -11.375 -13.860 -4.858 1.00 29.54 ? 13 DC A "O4'" 1 ATOM 92 C "C3'" . DC A 1 5 ? -13.288 -12.837 -5.791 1.00 30.16 ? 13 DC A "C3'" 1 ATOM 93 O "O3'" . DC A 1 5 ? -14.424 -13.232 -6.569 1.00 32.69 ? 13 DC A "O3'" 1 ATOM 94 C "C2'" . DC A 1 5 ? -13.556 -13.100 -4.325 1.00 28.93 ? 13 DC A "C2'" 1 ATOM 95 C "C1'" . DC A 1 5 ? -12.147 -13.261 -3.798 1.00 26.30 ? 13 DC A "C1'" 1 ATOM 96 N N1 . DC A 1 5 ? -11.482 -12.017 -3.382 1.00 25.81 ? 13 DC A N1 1 ATOM 97 C C2 . DC A 1 5 ? -11.944 -11.408 -2.212 1.00 23.70 ? 13 DC A C2 1 ATOM 98 O O2 . DC A 1 5 ? -12.922 -11.906 -1.626 1.00 27.07 ? 13 DC A O2 1 ATOM 99 N N3 . DC A 1 5 ? -11.338 -10.291 -1.770 1.00 22.95 ? 13 DC A N3 1 ATOM 100 C C4 . DC A 1 5 ? -10.299 -9.787 -2.436 1.00 27.04 ? 13 DC A C4 1 ATOM 101 N N4 . DC A 1 5 ? -9.738 -8.683 -1.963 1.00 27.95 ? 13 DC A N4 1 ATOM 102 C C5 . DC A 1 5 ? -9.808 -10.386 -3.630 1.00 28.26 ? 13 DC A C5 1 ATOM 103 C C6 . DC A 1 5 ? -10.405 -11.505 -4.046 1.00 28.58 ? 13 DC A C6 1 ATOM 104 P P . DC A 1 6 ? -15.441 -12.129 -7.174 1.00 32.76 ? 14 DC A P 1 ATOM 105 O OP1 . DC A 1 6 ? -16.359 -12.826 -8.085 1.00 41.22 ? 14 DC A OP1 1 ATOM 106 O OP2 . DC A 1 6 ? -14.665 -10.916 -7.622 1.00 32.18 ? 14 DC A OP2 1 ATOM 107 O "O5'" . DC A 1 6 ? -16.310 -11.660 -5.926 1.00 35.99 ? 14 DC A "O5'" 1 ATOM 108 C "C5'" . DC A 1 6 ? -17.275 -12.529 -5.364 1.00 32.32 ? 14 DC A "C5'" 1 ATOM 109 C "C4'" . DC A 1 6 ? -17.798 -11.879 -4.112 1.00 28.50 ? 14 DC A "C4'" 1 ATOM 110 O "O4'" . DC A 1 6 ? -16.698 -11.718 -3.213 1.00 29.25 ? 14 DC A "O4'" 1 ATOM 111 C "C3'" . DC A 1 6 ? -18.339 -10.469 -4.238 1.00 28.56 ? 14 DC A "C3'" 1 ATOM 112 O "O3'" . DC A 1 6 ? -19.675 -10.542 -4.699 1.00 29.60 ? 14 DC A "O3'" 1 ATOM 113 C "C2'" . DC A 1 6 ? -18.330 -10.061 -2.773 1.00 26.14 ? 14 DC A "C2'" 1 ATOM 114 C "C1'" . DC A 1 6 ? -16.967 -10.588 -2.378 1.00 27.77 ? 14 DC A "C1'" 1 ATOM 115 N N1 . DC A 1 6 ? -15.857 -9.657 -2.550 1.00 25.81 ? 14 DC A N1 1 ATOM 116 C C2 . DC A 1 6 ? -15.711 -8.618 -1.623 1.00 22.80 ? 14 DC A C2 1 ATOM 117 O O2 . DC A 1 6 ? -16.572 -8.480 -0.749 1.00 28.66 ? 14 DC A O2 1 ATOM 118 N N3 . DC A 1 6 ? -14.668 -7.769 -1.737 1.00 24.48 ? 14 DC A N3 1 ATOM 119 C C4 . DC A 1 6 ? -13.793 -7.924 -2.733 1.00 23.21 ? 14 DC A C4 1 ATOM 120 N N4 . DC A 1 6 ? -12.754 -7.097 -2.780 1.00 25.79 ? 14 DC A N4 1 ATOM 121 C C5 . DC A 1 6 ? -13.917 -8.970 -3.684 1.00 22.96 ? 14 DC A C5 1 ATOM 122 C C6 . DC A 1 6 ? -14.975 -9.787 -3.580 1.00 23.00 ? 14 DC A C6 1 ATOM 123 P P . DT A 1 7 ? -20.399 -9.321 -5.396 1.00 29.19 ? 15 DT A P 1 ATOM 124 O OP1 . DT A 1 7 ? -21.764 -9.809 -5.746 1.00 33.44 ? 15 DT A OP1 1 ATOM 125 O OP2 . DT A 1 7 ? -19.407 -8.679 -6.396 1.00 28.88 ? 15 DT A OP2 1 ATOM 126 O "O5'" . DT A 1 7 ? -20.617 -8.218 -4.271 1.00 29.30 ? 15 DT A "O5'" 1 ATOM 127 C "C5'" . DT A 1 7 ? -21.549 -8.398 -3.225 1.00 30.23 ? 15 DT A "C5'" 1 ATOM 128 C "C4'" . DT A 1 7 ? -21.479 -7.202 -2.307 1.00 29.41 ? 15 DT A "C4'" 1 ATOM 129 O "O4'" . DT A 1 7 ? -20.185 -7.136 -1.692 1.00 28.58 ? 15 DT A "O4'" 1 ATOM 130 C "C3'" . DT A 1 7 ? -21.650 -5.836 -2.948 1.00 26.42 ? 15 DT A "C3'" 1 ATOM 131 O "O3'" . DT A 1 7 ? -23.045 -5.641 -3.079 1.00 31.06 ? 15 DT A "O3'" 1 ATOM 132 C "C2'" . DT A 1 7 ? -21.054 -4.940 -1.890 1.00 26.90 ? 15 DT A "C2'" 1 ATOM 133 C "C1'" . DT A 1 7 ? -19.864 -5.767 -1.458 1.00 29.12 ? 15 DT A "C1'" 1 ATOM 134 N N1 . DT A 1 7 ? -18.624 -5.470 -2.177 1.00 23.27 ? 15 DT A N1 1 ATOM 135 C C2 . DT A 1 7 ? -17.858 -4.447 -1.669 1.00 25.96 ? 15 DT A C2 1 ATOM 136 O O2 . DT A 1 7 ? -18.240 -3.709 -0.773 1.00 31.11 ? 15 DT A O2 1 ATOM 137 N N3 . DT A 1 7 ? -16.686 -4.236 -2.334 1.00 25.80 ? 15 DT A N3 1 ATOM 138 C C4 . DT A 1 7 ? -16.150 -5.000 -3.355 1.00 24.22 ? 15 DT A C4 1 ATOM 139 O O4 . DT A 1 7 ? -15.046 -4.702 -3.837 1.00 26.91 ? 15 DT A O4 1 ATOM 140 C C5 . DT A 1 7 ? -17.013 -6.028 -3.861 1.00 23.46 ? 15 DT A C5 1 ATOM 141 C C7 . DT A 1 7 ? -16.562 -6.823 -5.044 1.00 25.68 ? 15 DT A C7 1 ATOM 142 C C6 . DT A 1 7 ? -18.183 -6.233 -3.239 1.00 26.96 ? 15 DT A C6 1 ATOM 143 P P . DC A 1 8 ? -23.673 -4.746 -4.211 1.00 32.23 ? 16 DC A P 1 ATOM 144 O OP1 . DC A 1 8 ? -25.173 -4.849 -4.098 1.00 41.84 ? 16 DC A OP1 1 ATOM 145 O OP2 . DC A 1 8 ? -22.966 -5.005 -5.480 1.00 35.40 ? 16 DC A OP2 1 ATOM 146 O "O5'" . DC A 1 8 ? -23.232 -3.284 -3.813 1.00 35.24 ? 16 DC A "O5'" 1 ATOM 147 C "C5'" . DC A 1 8 ? -23.726 -2.701 -2.626 1.00 37.31 ? 16 DC A "C5'" 1 ATOM 148 C "C4'" . DC A 1 8 ? -23.097 -1.342 -2.449 1.00 38.12 ? 16 DC A "C4'" 1 ATOM 149 O "O4'" . DC A 1 8 ? -21.719 -1.565 -2.108 1.00 36.57 ? 16 DC A "O4'" 1 ATOM 150 C "C3'" . DC A 1 8 ? -23.047 -0.485 -3.711 1.00 46.11 ? 16 DC A "C3'" 1 ATOM 151 O "O3'" . DC A 1 8 ? -24.152 0.404 -3.802 1.00 57.19 ? 16 DC A "O3'" 1 ATOM 152 C "C2'" . DC A 1 8 ? -21.823 0.368 -3.484 1.00 48.79 ? 16 DC A "C2'" 1 ATOM 153 C "C1'" . DC A 1 8 ? -20.924 -0.499 -2.622 1.00 37.41 ? 16 DC A "C1'" 1 ATOM 154 N N1 . DC A 1 8 ? -19.806 -1.062 -3.388 1.00 33.81 ? 16 DC A N1 1 ATOM 155 C C2 . DC A 1 8 ? -18.565 -0.431 -3.300 1.00 35.59 ? 16 DC A C2 1 ATOM 156 O O2 . DC A 1 8 ? -18.429 0.517 -2.516 1.00 35.29 ? 16 DC A O2 1 ATOM 157 N N3 . DC A 1 8 ? -17.521 -0.927 -3.998 1.00 28.25 ? 16 DC A N3 1 ATOM 158 C C4 . DC A 1 8 ? -17.696 -1.972 -4.806 1.00 27.62 ? 16 DC A C4 1 ATOM 159 N N4 . DC A 1 8 ? -16.651 -2.393 -5.495 1.00 25.50 ? 16 DC A N4 1 ATOM 160 C C5 . DC A 1 8 ? -18.952 -2.631 -4.927 1.00 27.84 ? 16 DC A C5 1 ATOM 161 C C6 . DC A 1 8 ? -19.980 -2.124 -4.231 1.00 30.96 ? 16 DC A C6 1 HETATM 162 MG MG . MG B 2 . ? -26.573 -5.185 -1.804 1.00 44.32 ? 101 MG A MG 1 HETATM 163 O O . HOH C 3 . ? -4.518 -10.015 1.339 1.00 48.60 ? 201 HOH A O 1 HETATM 164 O O . HOH C 3 . ? -13.393 -5.277 -5.814 1.00 41.25 ? 202 HOH A O 1 HETATM 165 O O . HOH C 3 . ? -2.172 -9.983 -0.346 1.00 47.54 ? 203 HOH A O 1 HETATM 166 O O . HOH C 3 . ? -0.497 -10.746 7.114 1.00 49.81 ? 204 HOH A O 1 HETATM 167 O O . HOH C 3 . ? -14.684 -14.111 -1.290 1.00 33.51 ? 205 HOH A O 1 HETATM 168 O O . HOH C 3 . ? -7.568 -7.417 -3.691 1.00 51.99 ? 206 HOH A O 1 HETATM 169 O O . HOH C 3 . ? -10.917 -7.161 -5.348 1.00 35.81 ? 207 HOH A O 1 HETATM 170 O O . HOH C 3 . ? 4.158 -13.245 -7.125 1.00 50.17 ? 208 HOH A O 1 HETATM 171 O O . HOH C 3 . ? -17.097 -15.052 -2.676 1.00 49.97 ? 209 HOH A O 1 HETATM 172 O O . HOH C 3 . ? 5.843 -5.252 1.049 1.00 46.50 ? 210 HOH A O 1 HETATM 173 O O . HOH C 3 . ? -19.582 -13.447 -1.563 1.00 63.55 ? 211 HOH A O 1 HETATM 174 O O . HOH C 3 . ? 5.985 -10.132 -4.569 1.00 53.64 ? 212 HOH A O 1 HETATM 175 O O . HOH C 3 . ? -25.019 -9.346 -3.184 1.00 59.77 ? 213 HOH A O 1 # loop_ _atom_site_anisotrop.id _atom_site_anisotrop.type_symbol _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_alt_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_seq_id _atom_site_anisotrop.pdbx_PDB_ins_code _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id 1 O "O5'" . DG A 1 ? 0.4734 0.5020 0.6764 -0.1151 0.0032 0.1141 9 DG A "O5'" 2 C "C5'" . DG A 1 ? 0.4593 0.4829 0.5006 -0.1093 -0.0309 0.0620 9 DG A "C5'" 3 C "C4'" . DG A 1 ? 0.3824 0.4866 0.3762 -0.1091 -0.0903 0.0765 9 DG A "C4'" 4 O "O4'" . DG A 1 ? 0.3747 0.3940 0.3965 -0.0949 -0.0222 0.0335 9 DG A "O4'" 5 C "C3'" . DG A 1 ? 0.3637 0.4093 0.3358 -0.1402 -0.0458 0.1044 9 DG A "C3'" 6 O "O3'" . DG A 1 ? 0.3863 0.5687 0.3775 -0.1038 -0.0532 0.1724 9 DG A "O3'" 7 C "C2'" . DG A 1 ? 0.4037 0.4791 0.2964 -0.0392 -0.0550 0.0354 9 DG A "C2'" 8 C "C1'" . DG A 1 ? 0.4037 0.3907 0.2763 -0.0924 0.0085 -0.0063 9 DG A "C1'" 9 N N9 . DG A 1 ? 0.3628 0.4339 0.2886 -0.0754 -0.0375 0.0296 9 DG A N9 10 C C8 . DG A 1 ? 0.3498 0.3395 0.3164 -0.0431 -0.0729 0.0452 9 DG A C8 11 N N7 . DG A 1 ? 0.3881 0.3567 0.2898 -0.0891 -0.0622 0.0142 9 DG A N7 12 C C5 . DG A 1 ? 0.3296 0.3301 0.2496 -0.0461 -0.0378 0.0438 9 DG A C5 13 C C6 . DG A 1 ? 0.3254 0.3578 0.3097 -0.0276 -0.0538 0.0147 9 DG A C6 14 O O6 . DG A 1 ? 0.3165 0.3940 0.2892 -0.0484 -0.0504 0.0401 9 DG A O6 15 N N1 . DG A 1 ? 0.3068 0.3792 0.2289 -0.0321 -0.0442 -0.0235 9 DG A N1 16 C C2 . DG A 1 ? 0.3292 0.3352 0.3172 -0.0109 -0.0317 -0.0030 9 DG A C2 17 N N2 . DG A 1 ? 0.3315 0.3968 0.3827 -0.0028 -0.0832 -0.0479 9 DG A N2 18 N N3 . DG A 1 ? 0.3751 0.4209 0.2967 -0.0764 0.0036 0.0131 9 DG A N3 19 C C4 . DG A 1 ? 0.3669 0.3756 0.2753 -0.0177 -0.0568 0.0177 9 DG A C4 20 P P . DA A 2 ? 0.5227 0.6103 0.4191 -0.0433 -0.0801 0.1708 10 DA A P 21 O OP1 . DA A 2 ? 0.6786 0.8094 0.3942 -0.1677 -0.1614 0.3318 10 DA A OP1 22 O OP2 . DA A 2 ? 0.5016 0.6576 0.6084 -0.0983 -0.0015 0.1593 10 DA A OP2 23 O "O5'" . DA A 2 ? 0.5170 0.5530 0.3192 -0.0736 -0.0503 0.0804 10 DA A "O5'" 24 C "C5'" . DA A 2 ? 0.5260 0.6451 0.4254 -0.0276 -0.0684 0.0735 10 DA A "C5'" 25 C "C4'" . DA A 2 ? 0.4987 0.6003 0.3176 -0.0235 -0.0179 0.0971 10 DA A "C4'" 26 O "O4'" . DA A 2 ? 0.5054 0.6036 0.3467 -0.1048 -0.1053 0.0658 10 DA A "O4'" 27 C "C3'" . DA A 2 ? 0.5444 0.5467 0.4371 0.0164 -0.0534 0.1846 10 DA A "C3'" 28 O "O3'" . DA A 2 ? 0.6106 0.7695 0.3728 -0.1028 -0.0026 0.0327 10 DA A "O3'" 29 C "C2'" . DA A 2 ? 0.4138 0.5248 0.4248 -0.0167 -0.0285 -0.0407 10 DA A "C2'" 30 C "C1'" . DA A 2 ? 0.4706 0.5170 0.4183 -0.0783 -0.0413 -0.0021 10 DA A "C1'" 31 N N9 . DA A 2 ? 0.4684 0.5195 0.3420 -0.1853 -0.0892 0.0450 10 DA A N9 32 C C8 . DA A 2 ? 0.4275 0.4950 0.3762 -0.1853 -0.0725 0.0588 10 DA A C8 33 N N7 . DA A 2 ? 0.4273 0.4308 0.4228 -0.0864 -0.1062 0.0871 10 DA A N7 34 C C5 . DA A 2 ? 0.4646 0.4718 0.2182 -0.0833 -0.1005 0.0654 10 DA A C5 35 C C6 . DA A 2 ? 0.3771 0.3468 0.3412 -0.0136 -0.0880 0.0865 10 DA A C6 36 N N6 . DA A 2 ? 0.3480 0.4054 0.3194 -0.0662 -0.0938 0.0420 10 DA A N6 37 N N1 . DA A 2 ? 0.3678 0.3967 0.3898 -0.0160 -0.1005 0.0491 10 DA A N1 38 C C2 . DA A 2 ? 0.4860 0.4733 0.3325 -0.1496 -0.0168 -0.0172 10 DA A C2 39 N N3 . DA A 2 ? 0.4280 0.4546 0.3941 -0.1517 -0.1331 0.0491 10 DA A N3 40 C C4 . DA A 2 ? 0.3958 0.4593 0.3573 -0.1501 -0.0941 0.0010 10 DA A C4 41 P P . DG A 3 ? 0.7960 0.8858 0.4416 -0.0624 -0.1794 0.0442 11 DG A P 42 O OP1 . DG A 3 ? 0.8920 1.1324 0.4501 0.0940 -0.0677 0.1227 11 DG A OP1 43 O OP2 . DG A 3 ? 0.6247 0.7108 0.4833 -0.1020 -0.0558 0.1574 11 DG A OP2 44 O "O5'" . DG A 3 ? 0.6940 0.6883 0.4929 0.0433 -0.0584 0.0667 11 DG A "O5'" 45 C "C5'" . DG A 3 ? 0.7824 0.7172 0.6029 -0.0607 0.0009 -0.0125 11 DG A "C5'" 46 C "C4'" . DG A 3 ? 0.5931 0.6429 0.3745 0.0445 -0.0001 0.0244 11 DG A "C4'" 47 O "O4'" . DG A 3 ? 0.4289 0.7999 0.3661 0.0745 0.0352 -0.0093 11 DG A "O4'" 48 C "C3'" . DG A 3 ? 0.6193 0.7522 0.3116 0.0653 0.0549 -0.0920 11 DG A "C3'" 49 O "O3'" . DG A 3 ? 0.6284 1.0075 0.2785 0.1187 0.1378 0.0683 11 DG A "O3'" 50 C "C2'" . DG A 3 ? 0.4809 0.7401 0.4376 0.0822 -0.0135 -0.0449 11 DG A "C2'" 51 C "C1'" . DG A 3 ? 0.5276 0.7023 0.3380 -0.0886 0.0057 -0.0868 11 DG A "C1'" 52 N N9 . DG A 3 ? 0.4467 0.5995 0.3194 -0.1233 -0.0184 -0.0366 11 DG A N9 53 C C8 . DG A 3 ? 0.4369 0.4987 0.3157 -0.0028 0.0620 -0.0799 11 DG A C8 54 N N7 . DG A 3 ? 0.4021 0.4759 0.2365 -0.0044 -0.0158 -0.0109 11 DG A N7 55 C C5 . DG A 3 ? 0.3826 0.4486 0.2879 -0.0201 -0.0531 0.0382 11 DG A C5 56 C C6 . DG A 3 ? 0.3786 0.3833 0.2729 0.0104 -0.0601 0.0461 11 DG A C6 57 O O6 . DG A 3 ? 0.3463 0.4043 0.3350 0.0045 -0.0671 0.0126 11 DG A O6 58 N N1 . DG A 3 ? 0.3157 0.3705 0.2236 0.0485 -0.0399 0.0415 11 DG A N1 59 C C2 . DG A 3 ? 0.3558 0.3925 0.2782 0.0648 -0.0513 0.0318 11 DG A C2 60 N N2 . DG A 3 ? 0.4449 0.3811 0.2758 0.0257 0.0129 -0.0634 11 DG A N2 61 N N3 . DG A 3 ? 0.3898 0.4905 0.2508 0.0063 -0.0390 -0.0102 11 DG A N3 62 C C4 . DG A 3 ? 0.4067 0.4174 0.3346 0.0069 -0.0111 0.0702 11 DG A C4 63 P P . DG A 4 ? 0.6807 0.8535 0.2492 -0.0140 -0.0100 0.0091 12 DG A P 64 O OP1 . DG A 4 ? 0.9690 1.3189 0.2365 -0.3058 -0.0438 -0.0458 12 DG A OP1 65 O OP2 . DG A 4 ? 0.6402 0.8356 0.5159 0.0525 0.1816 -0.0071 12 DG A OP2 66 O "O5'" . DG A 4 ? 0.6985 0.9027 0.3794 -0.0247 0.1699 0.1017 12 DG A "O5'" 67 C "C5'" . DG A 4 ? 0.6582 0.7825 0.2992 0.2350 0.1377 -0.0425 12 DG A "C5'" 68 C "C4'" . DG A 4 ? 0.6114 0.7234 0.3122 0.1410 -0.0116 -0.1329 12 DG A "C4'" 69 O "O4'" . DG A 4 ? 0.4593 0.7604 0.3203 0.1253 0.0199 -0.1968 12 DG A "O4'" 70 C "C3'" . DG A 4 ? 0.5996 0.5989 0.2209 0.0733 -0.0287 -0.1038 12 DG A "C3'" 71 O "O3'" . DG A 4 ? 0.4805 0.6220 0.2590 0.0952 -0.0004 -0.1389 12 DG A "O3'" 72 C "C2'" . DG A 4 ? 0.4113 0.5244 0.2871 0.1257 -0.0246 -0.0116 12 DG A "C2'" 73 C "C1'" . DG A 4 ? 0.4525 0.5259 0.2713 0.1757 -0.0152 -0.1099 12 DG A "C1'" 74 N N9 . DG A 4 ? 0.4179 0.4715 0.2786 0.0924 0.0095 -0.0155 12 DG A N9 75 C C8 . DG A 4 ? 0.4531 0.4642 0.3363 0.0135 -0.0021 -0.0790 12 DG A C8 76 N N7 . DG A 4 ? 0.4372 0.4992 0.2194 0.0476 -0.0425 -0.0341 12 DG A N7 77 C C5 . DG A 4 ? 0.4011 0.4406 0.2541 0.0516 -0.0019 -0.0424 12 DG A C5 78 C C6 . DG A 4 ? 0.3355 0.3199 0.2196 0.0361 -0.0502 -0.0020 12 DG A C6 79 O O6 . DG A 4 ? 0.3482 0.3669 0.2625 -0.0061 -0.0372 0.0306 12 DG A O6 80 N N1 . DG A 4 ? 0.3435 0.3475 0.2340 0.0590 -0.0470 0.0146 12 DG A N1 81 C C2 . DG A 4 ? 0.2784 0.3213 0.1899 0.0967 -0.0299 -0.0147 12 DG A C2 82 N N2 . DG A 4 ? 0.3418 0.3183 0.2520 0.0194 -0.0289 -0.0193 12 DG A N2 83 N N3 . DG A 4 ? 0.3455 0.3527 0.1891 0.0796 0.0182 -0.0193 12 DG A N3 84 C C4 . DG A 4 ? 0.3373 0.3670 0.2061 0.0702 -0.0300 0.0254 12 DG A C4 85 P P . DC A 5 ? 0.5064 0.5909 0.2826 0.0484 -0.0055 -0.0752 13 DC A P 86 O OP1 . DC A 5 ? 0.5937 0.8039 0.2583 -0.0050 -0.0625 -0.1515 13 DC A OP1 87 O OP2 . DC A 5 ? 0.5908 0.5633 0.3140 0.0371 -0.0879 -0.0494 13 DC A OP2 88 O "O5'" . DC A 5 ? 0.5075 0.6416 0.3345 0.0371 0.0177 -0.0137 13 DC A "O5'" 89 C "C5'" . DC A 5 ? 0.4654 0.5114 0.2425 0.0534 -0.0833 0.0266 13 DC A "C5'" 90 C "C4'" . DC A 5 ? 0.3662 0.4584 0.3244 0.0739 -0.0764 -0.0126 13 DC A "C4'" 91 O "O4'" . DC A 5 ? 0.3681 0.4633 0.2907 0.1154 -0.0441 -0.0407 13 DC A "O4'" 92 C "C3'" . DC A 5 ? 0.3461 0.4356 0.3640 0.0277 0.0308 -0.0110 13 DC A "C3'" 93 O "O3'" . DC A 5 ? 0.4441 0.4097 0.3882 0.0898 -0.0469 -0.0414 13 DC A "O3'" 94 C "C2'" . DC A 5 ? 0.3525 0.3941 0.3526 0.0799 -0.0261 0.0503 13 DC A "C2'" 95 C "C1'" . DC A 5 ? 0.3336 0.3906 0.2751 0.1114 -0.0011 0.0127 13 DC A "C1'" 96 N N1 . DC A 5 ? 0.3924 0.3411 0.2469 0.0914 0.0009 0.0141 13 DC A N1 97 C C2 . DC A 5 ? 0.3206 0.3426 0.2370 0.0847 0.0192 0.0022 13 DC A C2 98 O O2 . DC A 5 ? 0.3782 0.4001 0.2500 0.0856 0.0200 0.0484 13 DC A O2 99 N N3 . DC A 5 ? 0.3157 0.3387 0.2175 0.0523 -0.0351 0.0324 13 DC A N3 100 C C4 . DC A 5 ? 0.3048 0.3886 0.3337 0.0293 0.0598 0.0303 13 DC A C4 101 N N4 . DC A 5 ? 0.3576 0.3968 0.3076 0.0409 -0.0453 0.0624 13 DC A N4 102 C C5 . DC A 5 ? 0.3519 0.4264 0.2953 0.1021 0.0062 -0.0119 13 DC A C5 103 C C6 . DC A 5 ? 0.3778 0.4179 0.2900 0.0762 0.0414 0.0387 13 DC A C6 104 P P . DC A 6 ? 0.4148 0.4608 0.3689 0.0667 -0.0648 0.0106 14 DC A P 105 O OP1 . DC A 6 ? 0.5241 0.6504 0.3914 0.0697 -0.1885 -0.0738 14 DC A OP1 106 O OP2 . DC A 6 ? 0.4208 0.4724 0.3293 0.0568 0.0061 0.0329 14 DC A OP2 107 O "O5'" . DC A 6 ? 0.4204 0.4732 0.4737 0.1030 0.0080 0.0000 14 DC A "O5'" 108 C "C5'" . DC A 6 ? 0.4782 0.4164 0.3334 0.0492 -0.0814 0.0520 14 DC A "C5'" 109 C "C4'" . DC A 6 ? 0.3110 0.4298 0.3420 0.0023 -0.0423 0.0694 14 DC A "C4'" 110 O "O4'" . DC A 6 ? 0.3368 0.4113 0.3633 0.0380 -0.0499 0.0403 14 DC A "O4'" 111 C "C3'" . DC A 6 ? 0.4163 0.3919 0.2769 -0.0233 -0.0096 0.0431 14 DC A "C3'" 112 O "O3'" . DC A 6 ? 0.4437 0.3341 0.3467 -0.0129 0.0053 -0.0083 14 DC A "O3'" 113 C "C2'" . DC A 6 ? 0.3075 0.4185 0.2671 -0.0284 -0.0451 0.0676 14 DC A "C2'" 114 C "C1'" . DC A 6 ? 0.3445 0.3814 0.3292 0.0359 -0.0520 0.0582 14 DC A "C1'" 115 N N1 . DC A 6 ? 0.3457 0.3073 0.3276 0.0293 -0.0178 0.0101 14 DC A N1 116 C C2 . DC A 6 ? 0.2936 0.2955 0.2770 0.0277 -0.0888 0.0371 14 DC A C2 117 O O2 . DC A 6 ? 0.3833 0.4399 0.2655 0.0549 -0.0516 0.0363 14 DC A O2 118 N N3 . DC A 6 ? 0.2758 0.3508 0.3032 0.0573 0.0019 0.0243 14 DC A N3 119 C C4 . DC A 6 ? 0.3093 0.2778 0.2949 0.0596 0.0300 0.0475 14 DC A C4 120 N N4 . DC A 6 ? 0.3667 0.3659 0.2471 0.0049 0.0090 0.0738 14 DC A N4 121 C C5 . DC A 6 ? 0.3095 0.3064 0.2564 0.0732 0.0010 0.0478 14 DC A C5 122 C C6 . DC A 6 ? 0.3258 0.3244 0.2235 0.0803 -0.0565 0.0822 14 DC A C6 123 P P . DT A 7 ? 0.3502 0.4016 0.3573 0.0207 -0.0642 0.0215 15 DT A P 124 O OP1 . DT A 7 ? 0.3668 0.5419 0.3618 0.0059 -0.1398 -0.0198 15 DT A OP1 125 O OP2 . DT A 7 ? 0.3864 0.4414 0.2692 0.0229 -0.0607 0.0232 15 DT A OP2 126 O "O5'" . DT A 7 ? 0.3136 0.4208 0.3786 0.0658 -0.0007 0.0273 15 DT A "O5'" 127 C "C5'" . DT A 7 ? 0.2836 0.4354 0.4296 -0.0392 -0.0010 0.0851 15 DT A "C5'" 128 C "C4'" . DT A 7 ? 0.2842 0.4102 0.4229 -0.0453 0.0260 0.0791 15 DT A "C4'" 129 O "O4'" . DT A 7 ? 0.3379 0.3887 0.3592 -0.0071 0.0084 0.0930 15 DT A "O4'" 130 C "C3'" . DT A 7 ? 0.3324 0.3795 0.2917 -0.0157 -0.0083 0.0176 15 DT A "C3'" 131 O "O3'" . DT A 7 ? 0.3498 0.4705 0.3597 0.0589 0.0166 0.0747 15 DT A "O3'" 132 C "C2'" . DT A 7 ? 0.3125 0.3571 0.3524 -0.0261 0.0672 -0.0112 15 DT A "C2'" 133 C "C1'" . DT A 7 ? 0.3714 0.3953 0.3394 -0.0324 0.0723 0.0480 15 DT A "C1'" 134 N N1 . DT A 7 ? 0.2785 0.2998 0.3058 0.0152 -0.0035 0.0342 15 DT A N1 135 C C2 . DT A 7 ? 0.3300 0.3134 0.3429 -0.0075 -0.0631 0.0842 15 DT A C2 136 O O2 . DT A 7 ? 0.3909 0.3886 0.4022 -0.0209 -0.0036 0.1002 15 DT A O2 137 N N3 . DT A 7 ? 0.3114 0.3349 0.3337 0.0149 -0.0196 0.0979 15 DT A N3 138 C C4 . DT A 7 ? 0.3156 0.2422 0.3624 0.0063 -0.0274 0.0726 15 DT A C4 139 O O4 . DT A 7 ? 0.2954 0.3341 0.3928 -0.0031 -0.0153 0.1579 15 DT A O4 140 C C5 . DT A 7 ? 0.2840 0.2733 0.3339 0.0721 -0.0476 0.0807 15 DT A C5 141 C C7 . DT A 7 ? 0.3681 0.2805 0.3271 0.1050 -0.0133 0.0717 15 DT A C7 142 C C6 . DT A 7 ? 0.3291 0.3295 0.3656 0.0933 -0.0284 0.0074 15 DT A C6 143 P P . DC A 8 ? 0.3402 0.5413 0.3428 0.0319 0.0197 0.0711 16 DC A P 144 O OP1 . DC A 8 ? 0.3153 0.7156 0.5588 0.0459 -0.0067 0.2074 16 DC A OP1 145 O OP2 . DC A 8 ? 0.3930 0.6675 0.2844 0.0255 0.0420 0.0782 16 DC A OP2 146 O "O5'" . DC A 8 ? 0.3732 0.5482 0.4173 0.0300 -0.0039 0.0115 16 DC A "O5'" 147 C "C5'" . DC A 8 ? 0.3523 0.4916 0.5737 0.0570 0.1283 -0.0362 16 DC A "C5'" 148 C "C4'" . DC A 8 ? 0.4033 0.4645 0.5804 0.0334 0.0066 -0.0083 16 DC A "C4'" 149 O "O4'" . DC A 8 ? 0.3425 0.4577 0.5890 0.0043 0.0776 0.0371 16 DC A "O4'" 150 C "C3'" . DC A 8 ? 0.6318 0.4375 0.6824 0.0835 0.0117 0.0490 16 DC A "C3'" 151 O "O3'" . DC A 8 ? 0.6085 0.5086 1.0556 0.1156 0.3245 -0.0076 16 DC A "O3'" 152 C "C2'" . DC A 8 ? 0.4397 0.5529 0.8608 0.0975 0.1455 0.1372 16 DC A "C2'" 153 C "C1'" . DC A 8 ? 0.4478 0.4421 0.5314 0.0000 0.1819 0.0571 16 DC A "C1'" 154 N N1 . DC A 8 ? 0.3928 0.4902 0.4015 0.0021 0.0751 0.0215 16 DC A N1 155 C C2 . DC A 8 ? 0.4262 0.3515 0.5745 0.0090 0.0492 0.0949 16 DC A C2 156 O O2 . DC A 8 ? 0.4147 0.3821 0.5438 -0.0120 0.1134 0.0570 16 DC A O2 157 N N3 . DC A 8 ? 0.3925 0.3765 0.3043 0.0232 -0.0263 0.0826 16 DC A N3 158 C C4 . DC A 8 ? 0.3627 0.3975 0.2890 -0.0210 -0.0222 0.1052 16 DC A C4 159 N N4 . DC A 8 ? 0.3419 0.3061 0.3208 -0.0108 -0.0213 0.0475 16 DC A N4 160 C C5 . DC A 8 ? 0.3581 0.3377 0.3616 -0.0293 0.0128 0.0711 16 DC A C5 161 C C6 . DC A 8 ? 0.3520 0.4549 0.3691 -0.1215 -0.0281 0.0471 16 DC A C6 162 MG MG . MG B . ? 0.4861 0.6329 0.5649 -0.0681 0.0290 -0.0835 101 MG A MG 163 O O . HOH C . ? 0.5572 0.6164 0.6730 0.0059 0.0654 0.1550 201 HOH A O 164 O O . HOH C . ? 0.5495 0.5923 0.4253 0.0968 0.0641 0.1986 202 HOH A O 165 O O . HOH C . ? 0.6190 0.6723 0.5147 0.0324 -0.0015 -0.1068 203 HOH A O 166 O O . HOH C . ? 0.6431 0.6665 0.5826 0.0898 0.0715 0.0073 204 HOH A O 167 O O . HOH C . ? 0.4644 0.3984 0.4105 0.0053 -0.0575 0.0476 205 HOH A O 168 O O . HOH C . ? 0.6239 0.7032 0.6483 -0.1895 0.2183 -0.0403 206 HOH A O 169 O O . HOH C . ? 0.4693 0.4962 0.3949 0.0896 0.0906 0.0838 207 HOH A O 170 O O . HOH C . ? 0.6757 0.7448 0.4855 -0.0331 -0.0539 0.0692 208 HOH A O 171 O O . HOH C . ? 0.6640 0.7278 0.5066 -0.1842 0.0094 0.1281 209 HOH A O 172 O O . HOH C . ? 0.5385 0.6906 0.5373 -0.0449 0.0394 -0.0575 210 HOH A O 173 O O . HOH C . ? 1.0010 0.9677 0.4456 -0.5774 0.1232 -0.0492 211 HOH A O 174 O O . HOH C . ? 0.8903 0.6908 0.4567 0.0053 -0.0532 0.1462 212 HOH A O 175 O O . HOH C . ? 0.6340 0.9576 0.6793 -0.2800 0.2987 -0.2936 213 HOH A O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 9 9 DG DG A . n A 1 2 DA 2 10 10 DA DA A . n A 1 3 DG 3 11 11 DG DG A . n A 1 4 DG 4 12 12 DG DG A . n A 1 5 DC 5 13 13 DC DC A . n A 1 6 DC 6 14 14 DC DC A . n A 1 7 DT 7 15 15 DT DT A . n A 1 8 DC 8 16 16 DC DC A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 101 1 MG MG A . C 3 HOH 1 201 2 HOH HOH A . C 3 HOH 2 202 5 HOH HOH A . C 3 HOH 3 203 20 HOH HOH A . C 3 HOH 4 204 18 HOH HOH A . C 3 HOH 5 205 1 HOH HOH A . C 3 HOH 6 206 16 HOH HOH A . C 3 HOH 7 207 21 HOH HOH A . C 3 HOH 8 208 22 HOH HOH A . C 3 HOH 9 209 3 HOH HOH A . C 3 HOH 10 210 19 HOH HOH A . C 3 HOH 11 211 15 HOH HOH A . C 3 HOH 12 212 17 HOH HOH A . C 3 HOH 13 213 11 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 930 ? 1 MORE -16 ? 1 'SSA (A^2)' 3090 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-01-23 2 'Structure model' 1 1 2019-12-04 3 'Structure model' 1 2 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0135 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MG MG MG N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 6DWT _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 7_555 -0.448 -0.182 -0.318 -14.229 -9.834 0.672 1 A_DG9:DC16_A A 9 ? A 16 ? 19 1 1 A DA 2 1_555 A DT 7 7_555 0.054 -0.113 -0.188 -6.313 -13.128 2.751 2 A_DA10:DT15_A A 10 ? A 15 ? 20 1 1 A DG 3 1_555 A DC 6 7_555 -0.129 -0.189 -0.055 -5.747 -11.346 -1.269 3 A_DG11:DC14_A A 11 ? A 14 ? 19 1 1 A DG 4 1_555 A DC 5 7_555 -0.211 -0.120 -0.001 -6.045 -8.884 0.232 4 A_DG12:DC13_A A 12 ? A 13 ? 19 1 1 A DC 5 1_555 A DG 4 7_555 0.211 -0.120 -0.001 6.045 -8.884 0.232 5 A_DC13:DG12_A A 13 ? A 12 ? 19 1 1 A DC 6 1_555 A DG 3 7_555 0.129 -0.189 -0.055 5.747 -11.346 -1.269 6 A_DC14:DG11_A A 14 ? A 11 ? 19 1 1 A DT 7 1_555 A DA 2 7_555 -0.054 -0.113 -0.188 6.313 -13.128 2.751 7 A_DT15:DA10_A A 15 ? A 10 ? 20 1 1 A DC 8 1_555 A DG 1 7_555 0.448 -0.182 -0.318 14.229 -9.834 0.672 8 A_DC16:DG9_A A 16 ? A 9 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 7_555 A DA 2 1_555 A DT 7 7_555 0.154 -1.036 3.215 -0.685 6.550 33.418 -2.764 -0.368 2.961 11.254 1.176 34.043 1 AA_DG9DA10:DT15DC16_AA A 9 ? A 16 ? A 10 ? A 15 ? 1 A DA 2 1_555 A DT 7 7_555 A DG 3 1_555 A DC 6 7_555 0.388 -1.728 3.328 0.773 6.580 29.352 -4.627 -0.596 2.890 12.782 -1.501 30.075 2 AA_DA10DG11:DC14DT15_AA A 10 ? A 15 ? A 11 ? A 14 ? 1 A DG 3 1_555 A DC 6 7_555 A DG 4 1_555 A DC 5 7_555 0.583 -1.778 3.253 2.215 4.669 33.400 -3.787 -0.657 3.016 8.063 -3.826 33.786 3 AA_DG11DG12:DC13DC14_AA A 11 ? A 14 ? A 12 ? A 13 ? 1 A DG 4 1_555 A DC 5 7_555 A DC 5 1_555 A DG 4 7_555 0.000 -2.422 3.105 0.000 2.065 23.536 -6.548 0.000 2.884 5.049 0.000 23.625 4 AA_DG12DC13:DG12DC13_AA A 12 ? A 13 ? A 13 ? A 12 ? 1 A DC 5 1_555 A DG 4 7_555 A DC 6 1_555 A DG 3 7_555 -0.583 -1.778 3.253 -2.215 4.669 33.400 -3.787 0.657 3.016 8.063 3.826 33.786 5 AA_DC13DC14:DG11DG12_AA A 13 ? A 12 ? A 14 ? A 11 ? 1 A DC 6 1_555 A DG 3 7_555 A DT 7 1_555 A DA 2 7_555 -0.388 -1.728 3.328 -0.773 6.580 29.352 -4.627 0.596 2.890 12.782 1.501 30.075 6 AA_DC14DT15:DA10DG11_AA A 14 ? A 11 ? A 15 ? A 10 ? 1 A DT 7 1_555 A DA 2 7_555 A DC 8 1_555 A DG 1 7_555 -0.154 -1.036 3.215 0.685 6.550 33.418 -2.764 0.368 2.961 11.254 -1.176 34.043 7 AA_DT15DC16:DG9DA10_AA A 15 ? A 10 ? A 16 ? A 9 ? # _pdbx_audit_support.funding_organization 'Department of Defense (DOD, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number PC150300P1 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6DXJ _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details 'Double-stranded DNA' #