Acta Crystallographica Section D
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STRUCTURAL BIOLOGY
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STRUCTURAL
BIOLOGY
Volume 49
|
Part 2
|
March 1993
|
Pages 282–291
https://doi.org/10.1107/S0907444992007522
Open
access
ISSN: 2059-7983
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STRUCTURAL
BIOLOGY
Volume 49
|
Part 2
|
March 1993
|
Pages 282–291
https://doi.org/10.1107/S0907444992007522
Open
access
ISSN: 2059-7983
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data_1D78 # _entry.id 1D78 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.367 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D78 pdb_00001d78 10.2210/pdb1d78/pdb RCSB ADH038 ? ? WWPDB D_1000172676 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D78 _pdbx_database_status.recvd_initial_deposition_date 1992-06-12 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Thota, N.' 1 ? 'Li, X.H.' 2 ? 'Bingman, C.A.' 3 ? 'Sundaralingam, M.' 4 ? # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'High-resolution refinement of the hexagonal A-DNA octamer d(GTGTACAC) at 1.4 A.' 'Acta Crystallogr.,Sect.D' 49 282 291 1993 ABCRE6 DK 0907-4449 0766 ? 15299533 10.1107/S0907444992007522 1 ;Hexagonal Crystal Structure of the A-DNA Octamer d(GTGTACAC) and Its Comparison with the Tetragonal Structure: Correlated Variations in Helical Parameters ; Biochemistry 30 3567 3576 1991 BICHAW US 0006-2960 0033 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Thota, N.' 1 ? primary 'Li, X.H.' 2 ? primary 'Bingman, C.A.' 3 ? primary 'Sundaralingam, M.' 4 ? 1 'Jain, S.' 5 ? 1 'Zon, G.' 6 ? 1 'Sundaralingam, M.' 7 ? # _cell.entry_id 1D78 _cell.length_a 32.182 _cell.length_b 32.182 _cell.length_c 78.511 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D78 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*TP*GP*TP*AP*CP*AP*C)-3') ; 2426.617 1 ? ? ? ? 2 water nat water 18.015 37 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DT)(DG)(DT)(DA)(DC)(DA)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GTGTACAC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 DC n 1 7 DA n 1 8 DC n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D78 _struct_ref.pdbx_db_accession 1D78 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1D78 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1D78 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.entry_id 1D78 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.42 _exptl_crystal.density_percent_sol 49.14 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 283.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION, temperature 283.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 SPERMINE ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? 1 7 2 MGCL2 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 258.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type XENTRONICS _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1D78 _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 5.000 _reflns.d_resolution_high 1.400 _reflns.number_obs 4365 _reflns.number_all 7730 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _refine.entry_id 1D78 _refine.ls_number_reflns_obs 4365 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 5.000 _refine.ls_d_res_high 1.400 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1980000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 161 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 198 _refine_hist.d_res_high 1.400 _refine_hist.d_res_low 5.000 # _struct.entry_id 1D78 _struct.title 'HIGH RESOLUTION REFINEMENT OF THE HEXAGONAL A-DNA OCTAMER D(GTGTACAC) AT 1.4 ANGSTROMS RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D78 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 A DA 7 N1 ? ? A DT 2 A DA 7 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 A DA 7 N6 ? ? A DT 2 A DA 7 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 4 A DA 5 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 4 A DA 5 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 5 A DT 4 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 5 A DT 4 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A DT 2 N3 ? ? A DA 7 A DT 2 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DT 2 O4 ? ? A DA 7 A DT 2 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 12_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1D78 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1D78 _atom_sites.fract_transf_matrix[1][1] 0.031073 _atom_sites.fract_transf_matrix[1][2] 0.017940 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035880 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012737 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 9.534 12.204 3.211 1.00 23.81 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 8.462 11.474 2.575 1.00 18.00 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 8.771 11.407 1.107 1.00 15.58 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 8.710 12.712 0.550 1.00 17.40 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 10.144 10.875 0.722 1.00 16.75 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 10.099 9.448 0.620 1.00 17.10 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 10.390 11.513 -0.644 1.00 14.11 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 9.741 12.865 -0.448 1.00 15.25 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 10.689 13.865 0.094 1.00 14.20 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 10.556 14.559 1.264 1.00 18.50 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 11.495 15.457 1.452 1.00 16.81 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 12.300 15.312 0.322 1.00 13.34 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 13.478 16.003 -0.086 1.00 18.47 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 14.065 16.909 0.518 1.00 19.93 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 13.969 15.577 -1.280 1.00 15.47 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 13.415 14.612 -2.049 1.00 14.71 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 14.007 14.272 -3.188 1.00 15.49 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 12.290 13.957 -1.727 1.00 14.67 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 11.808 14.359 -0.542 1.00 12.97 ? 1 DG A C4 1 ATOM 20 P P . DT A 1 2 ? 11.437 8.584 0.989 1.00 17.44 ? 2 DT A P 1 ATOM 21 O OP1 . DT A 1 2 ? 10.985 7.104 0.864 1.00 22.35 ? 2 DT A OP1 1 ATOM 22 O OP2 . DT A 1 2 ? 11.801 8.963 2.300 1.00 17.69 ? 2 DT A OP2 1 ATOM 23 O "O5'" . DT A 1 2 ? 12.429 8.874 -0.212 1.00 19.64 ? 2 DT A "O5'" 1 ATOM 24 C "C5'" . DT A 1 2 ? 12.244 8.408 -1.555 1.00 16.99 ? 2 DT A "C5'" 1 ATOM 25 C "C4'" . DT A 1 2 ? 13.478 8.824 -2.332 1.00 17.73 ? 2 DT A "C4'" 1 ATOM 26 O "O4'" . DT A 1 2 ? 13.503 10.240 -2.426 1.00 19.41 ? 2 DT A "O4'" 1 ATOM 27 C "C3'" . DT A 1 2 ? 14.812 8.481 -1.672 1.00 22.55 ? 2 DT A "C3'" 1 ATOM 28 O "O3'" . DT A 1 2 ? 15.206 7.112 -1.845 1.00 26.03 ? 2 DT A "O3'" 1 ATOM 29 C "C2'" . DT A 1 2 ? 15.753 9.459 -2.379 1.00 20.59 ? 2 DT A "C2'" 1 ATOM 30 C "C1'" . DT A 1 2 ? 14.878 10.697 -2.450 1.00 17.54 ? 2 DT A "C1'" 1 ATOM 31 N N1 . DT A 1 2 ? 15.130 11.580 -1.303 1.00 14.12 ? 2 DT A N1 1 ATOM 32 C C2 . DT A 1 2 ? 16.224 12.450 -1.390 1.00 13.68 ? 2 DT A C2 1 ATOM 33 O O2 . DT A 1 2 ? 16.894 12.416 -2.418 1.00 16.72 ? 2 DT A O2 1 ATOM 34 N N3 . DT A 1 2 ? 16.385 13.319 -0.369 1.00 13.73 ? 2 DT A N3 1 ATOM 35 C C4 . DT A 1 2 ? 15.615 13.350 0.738 1.00 13.75 ? 2 DT A C4 1 ATOM 36 O O4 . DT A 1 2 ? 15.846 14.175 1.664 1.00 15.98 ? 2 DT A O4 1 ATOM 37 C C5 . DT A 1 2 ? 14.533 12.413 0.848 1.00 14.63 ? 2 DT A C5 1 ATOM 38 C C7 . DT A 1 2 ? 13.643 12.416 2.065 1.00 17.50 ? 2 DT A C7 1 ATOM 39 C C6 . DT A 1 2 ? 14.355 11.575 -0.181 1.00 12.15 ? 2 DT A C6 1 ATOM 40 P P . DG A 1 3 ? 16.195 6.491 -0.762 1.00 25.47 ? 3 DG A P 1 ATOM 41 O OP1 . DG A 1 3 ? 16.244 5.064 -1.217 1.00 30.97 ? 3 DG A OP1 1 ATOM 42 O OP2 . DG A 1 3 ? 15.932 6.714 0.659 1.00 22.97 ? 3 DG A OP2 1 ATOM 43 O "O5'" . DG A 1 3 ? 17.647 7.221 -1.068 1.00 25.76 ? 3 DG A "O5'" 1 ATOM 44 C "C5'" . DG A 1 3 ? 18.323 6.915 -2.300 1.00 22.34 ? 3 DG A "C5'" 1 ATOM 45 C "C4'" . DG A 1 3 ? 19.436 7.940 -2.347 1.00 19.23 ? 3 DG A "C4'" 1 ATOM 46 O "O4'" . DG A 1 3 ? 18.844 9.211 -2.159 1.00 17.55 ? 3 DG A "O4'" 1 ATOM 47 C "C3'" . DG A 1 3 ? 20.505 7.862 -1.264 1.00 19.65 ? 3 DG A "C3'" 1 ATOM 48 O "O3'" . DG A 1 3 ? 21.502 6.870 -1.531 1.00 19.45 ? 3 DG A "O3'" 1 ATOM 49 C "C2'" . DG A 1 3 ? 21.089 9.275 -1.319 1.00 15.67 ? 3 DG A "C2'" 1 ATOM 50 C "C1'" . DG A 1 3 ? 19.824 10.089 -1.570 1.00 16.66 ? 3 DG A "C1'" 1 ATOM 51 N N9 . DG A 1 3 ? 19.304 10.660 -0.322 1.00 13.95 ? 3 DG A N9 1 ATOM 52 C C8 . DG A 1 3 ? 18.226 10.292 0.440 1.00 13.77 ? 3 DG A C8 1 ATOM 53 N N7 . DG A 1 3 ? 18.004 11.045 1.484 1.00 13.96 ? 3 DG A N7 1 ATOM 54 C C5 . DG A 1 3 ? 19.031 11.998 1.405 1.00 13.23 ? 3 DG A C5 1 ATOM 55 C C6 . DG A 1 3 ? 19.303 13.160 2.190 1.00 10.00 ? 3 DG A C6 1 ATOM 56 O O6 . DG A 1 3 ? 18.706 13.525 3.195 1.00 13.59 ? 3 DG A O6 1 ATOM 57 N N1 . DG A 1 3 ? 20.437 13.832 1.782 1.00 11.49 ? 3 DG A N1 1 ATOM 58 C C2 . DG A 1 3 ? 21.129 13.509 0.667 1.00 12.37 ? 3 DG A C2 1 ATOM 59 N N2 . DG A 1 3 ? 22.193 14.270 0.338 1.00 13.43 ? 3 DG A N2 1 ATOM 60 N N3 . DG A 1 3 ? 20.878 12.483 -0.149 1.00 13.43 ? 3 DG A N3 1 ATOM 61 C C4 . DG A 1 3 ? 19.813 11.781 0.306 1.00 12.97 ? 3 DG A C4 1 ATOM 62 P P . DT A 1 4 ? 22.450 6.282 -0.463 1.00 19.47 ? 4 DT A P 1 ATOM 63 O OP1 . DT A 1 4 ? 23.230 5.120 -1.131 1.00 28.86 ? 4 DT A OP1 1 ATOM 64 O OP2 . DT A 1 4 ? 21.819 5.953 0.769 1.00 18.27 ? 4 DT A OP2 1 ATOM 65 O "O5'" . DT A 1 4 ? 23.589 7.430 -0.165 1.00 18.66 ? 4 DT A "O5'" 1 ATOM 66 C "C5'" . DT A 1 4 ? 24.474 7.820 -1.240 1.00 18.72 ? 4 DT A "C5'" 1 ATOM 67 C "C4'" . DT A 1 4 ? 25.277 8.949 -0.620 1.00 18.90 ? 4 DT A "C4'" 1 ATOM 68 O "O4'" . DT A 1 4 ? 24.449 10.089 -0.455 1.00 20.92 ? 4 DT A "O4'" 1 ATOM 69 C "C3'" . DT A 1 4 ? 25.837 8.704 0.769 1.00 22.03 ? 4 DT A "C3'" 1 ATOM 70 O "O3'" . DT A 1 4 ? 27.021 7.896 0.785 1.00 22.25 ? 4 DT A "O3'" 1 ATOM 71 C "C2'" . DT A 1 4 ? 26.104 10.136 1.233 1.00 17.40 ? 4 DT A "C2'" 1 ATOM 72 C "C1'" . DT A 1 4 ? 24.875 10.850 0.691 1.00 18.31 ? 4 DT A "C1'" 1 ATOM 73 N N1 . DT A 1 4 ? 23.806 10.911 1.704 1.00 18.30 ? 4 DT A N1 1 ATOM 74 C C2 . DT A 1 4 ? 23.789 11.995 2.567 1.00 18.67 ? 4 DT A C2 1 ATOM 75 O O2 . DT A 1 4 ? 24.720 12.806 2.544 1.00 20.31 ? 4 DT A O2 1 ATOM 76 N N3 . DT A 1 4 ? 22.806 12.059 3.494 1.00 14.75 ? 4 DT A N3 1 ATOM 77 C C4 . DT A 1 4 ? 21.805 11.134 3.588 1.00 15.15 ? 4 DT A C4 1 ATOM 78 O O4 . DT A 1 4 ? 20.934 11.282 4.475 1.00 16.17 ? 4 DT A O4 1 ATOM 79 C C5 . DT A 1 4 ? 21.848 10.022 2.693 1.00 14.10 ? 4 DT A C5 1 ATOM 80 C C7 . DT A 1 4 ? 20.781 8.955 2.756 1.00 17.01 ? 4 DT A C7 1 ATOM 81 C C6 . DT A 1 4 ? 22.819 9.958 1.782 1.00 15.68 ? 4 DT A C6 1 ATOM 82 P P . DA A 1 5 ? 27.472 7.126 2.073 1.00 20.29 ? 5 DA A P 1 ATOM 83 O OP1 . DA A 1 5 ? 28.548 6.193 1.562 1.00 27.38 ? 5 DA A OP1 1 ATOM 84 O OP2 . DA A 1 5 ? 26.281 6.329 2.662 1.00 21.27 ? 5 DA A OP2 1 ATOM 85 O "O5'" . DA A 1 5 ? 27.968 8.130 3.156 1.00 18.16 ? 5 DA A "O5'" 1 ATOM 86 C "C5'" . DA A 1 5 ? 29.168 8.905 2.858 1.00 16.04 ? 5 DA A "C5'" 1 ATOM 87 C "C4'" . DA A 1 5 ? 29.253 10.022 3.863 1.00 17.44 ? 5 DA A "C4'" 1 ATOM 88 O "O4'" . DA A 1 5 ? 28.132 10.894 3.745 1.00 16.36 ? 5 DA A "O4'" 1 ATOM 89 C "C3'" . DA A 1 5 ? 29.245 9.590 5.323 1.00 18.18 ? 5 DA A "C3'" 1 ATOM 90 O "O3'" . DA A 1 5 ? 30.505 9.069 5.747 1.00 18.60 ? 5 DA A "O3'" 1 ATOM 91 C "C2'" . DA A 1 5 ? 28.883 10.903 6.030 1.00 19.44 ? 5 DA A "C2'" 1 ATOM 92 C "C1'" . DA A 1 5 ? 27.877 11.457 5.040 1.00 13.51 ? 5 DA A "C1'" 1 ATOM 93 N N9 . DA A 1 5 ? 26.507 11.045 5.417 1.00 14.26 ? 5 DA A N9 1 ATOM 94 C C8 . DA A 1 5 ? 25.776 10.014 4.899 1.00 18.06 ? 5 DA A C8 1 ATOM 95 N N7 . DA A 1 5 ? 24.558 9.933 5.402 1.00 15.01 ? 5 DA A N7 1 ATOM 96 C C5 . DA A 1 5 ? 24.508 11.000 6.289 1.00 14.94 ? 5 DA A C5 1 ATOM 97 C C6 . DA A 1 5 ? 23.477 11.471 7.129 1.00 14.74 ? 5 DA A C6 1 ATOM 98 N N6 . DA A 1 5 ? 22.275 10.906 7.239 1.00 17.52 ? 5 DA A N6 1 ATOM 99 N N1 . DA A 1 5 ? 23.794 12.544 7.914 1.00 17.39 ? 5 DA A N1 1 ATOM 100 C C2 . DA A 1 5 ? 25.008 13.155 7.859 1.00 21.00 ? 5 DA A C2 1 ATOM 101 N N3 . DA A 1 5 ? 26.009 12.770 7.066 1.00 18.57 ? 5 DA A N3 1 ATOM 102 C C4 . DA A 1 5 ? 25.689 11.725 6.297 1.00 14.84 ? 5 DA A C4 1 ATOM 103 P P . DC A 1 6 ? 30.563 7.954 6.925 1.00 18.12 ? 6 DC A P 1 ATOM 104 O OP1 . DC A 1 6 ? 32.060 7.464 6.830 1.00 24.55 ? 6 DC A OP1 1 ATOM 105 O OP2 . DC A 1 6 ? 29.641 6.898 6.501 1.00 21.54 ? 6 DC A OP2 1 ATOM 106 O "O5'" . DC A 1 6 ? 30.280 8.645 8.259 1.00 15.62 ? 6 DC A "O5'" 1 ATOM 107 C "C5'" . DC A 1 6 ? 31.120 9.693 8.793 1.00 17.53 ? 6 DC A "C5'" 1 ATOM 108 C "C4'" . DC A 1 6 ? 30.376 10.468 9.845 1.00 16.58 ? 6 DC A "C4'" 1 ATOM 109 O "O4'" . DC A 1 6 ? 29.194 11.017 9.288 1.00 16.44 ? 6 DC A "O4'" 1 ATOM 110 C "C3'" . DC A 1 6 ? 29.892 9.646 11.031 1.00 19.44 ? 6 DC A "C3'" 1 ATOM 111 O "O3'" . DC A 1 6 ? 30.967 9.362 11.926 1.00 17.55 ? 6 DC A "O3'" 1 ATOM 112 C "C2'" . DC A 1 6 ? 28.811 10.566 11.596 1.00 15.36 ? 6 DC A "C2'" 1 ATOM 113 C "C1'" . DC A 1 6 ? 28.190 11.084 10.316 1.00 15.13 ? 6 DC A "C1'" 1 ATOM 114 N N1 . DC A 1 6 ? 27.013 10.290 9.869 1.00 14.15 ? 6 DC A N1 1 ATOM 115 C C2 . DC A 1 6 ? 25.802 10.716 10.403 1.00 13.78 ? 6 DC A C2 1 ATOM 116 O O2 . DC A 1 6 ? 25.768 11.605 11.243 1.00 15.92 ? 6 DC A O2 1 ATOM 117 N N3 . DC A 1 6 ? 24.679 10.019 10.049 1.00 14.88 ? 6 DC A N3 1 ATOM 118 C C4 . DC A 1 6 ? 24.720 9.010 9.147 1.00 13.43 ? 6 DC A C4 1 ATOM 119 N N4 . DC A 1 6 ? 23.591 8.369 8.817 1.00 14.62 ? 6 DC A N4 1 ATOM 120 C C5 . DC A 1 6 ? 25.974 8.595 8.581 1.00 14.25 ? 6 DC A C5 1 ATOM 121 C C6 . DC A 1 6 ? 27.067 9.289 8.958 1.00 14.46 ? 6 DC A C6 1 ATOM 122 P P . DA A 1 7 ? 30.893 8.225 13.017 1.00 18.48 ? 7 DA A P 1 ATOM 123 O OP1 . DA A 1 7 ? 32.346 8.060 13.418 1.00 22.28 ? 7 DA A OP1 1 ATOM 124 O OP2 . DA A 1 7 ? 30.288 6.970 12.420 1.00 19.16 ? 7 DA A OP2 1 ATOM 125 O "O5'" . DA A 1 7 ? 30.021 8.815 14.179 1.00 17.72 ? 7 DA A "O5'" 1 ATOM 126 C "C5'" . DA A 1 7 ? 30.318 10.072 14.823 1.00 15.65 ? 7 DA A "C5'" 1 ATOM 127 C "C4'" . DA A 1 7 ? 29.211 10.295 15.828 1.00 19.79 ? 7 DA A "C4'" 1 ATOM 128 O "O4'" . DA A 1 7 ? 27.972 10.340 15.145 1.00 17.80 ? 7 DA A "O4'" 1 ATOM 129 C "C3'" . DA A 1 7 ? 29.071 9.222 16.903 1.00 21.42 ? 7 DA A "C3'" 1 ATOM 130 O "O3'" . DA A 1 7 ? 28.827 9.819 18.175 1.00 25.80 ? 7 DA A "O3'" 1 ATOM 131 C "C2'" . DA A 1 7 ? 27.914 8.350 16.417 1.00 21.11 ? 7 DA A "C2'" 1 ATOM 132 C "C1'" . DA A 1 7 ? 27.054 9.378 15.702 1.00 18.83 ? 7 DA A "C1'" 1 ATOM 133 N N9 . DA A 1 7 ? 26.299 8.740 14.619 1.00 15.02 ? 7 DA A N9 1 ATOM 134 C C8 . DA A 1 7 ? 26.807 8.021 13.567 1.00 15.05 ? 7 DA A C8 1 ATOM 135 N N7 . DA A 1 7 ? 25.910 7.547 12.742 1.00 15.20 ? 7 DA A N7 1 ATOM 136 C C5 . DA A 1 7 ? 24.714 8.024 13.292 1.00 13.84 ? 7 DA A C5 1 ATOM 137 C C6 . DA A 1 7 ? 23.367 7.820 12.892 1.00 13.01 ? 7 DA A C6 1 ATOM 138 N N6 . DA A 1 7 ? 23.008 7.149 11.808 1.00 14.61 ? 7 DA A N6 1 ATOM 139 N N1 . DA A 1 7 ? 22.456 8.445 13.684 1.00 13.55 ? 7 DA A N1 1 ATOM 140 C C2 . DA A 1 7 ? 22.783 9.139 14.791 1.00 13.50 ? 7 DA A C2 1 ATOM 141 N N3 . DA A 1 7 ? 24.027 9.359 15.231 1.00 13.66 ? 7 DA A N3 1 ATOM 142 C C4 . DA A 1 7 ? 24.931 8.751 14.430 1.00 12.31 ? 7 DA A C4 1 ATOM 143 P P . DC A 1 8 ? 28.833 8.977 19.526 1.00 33.09 ? 8 DC A P 1 ATOM 144 O OP1 . DC A 1 8 ? 29.086 9.833 20.688 1.00 37.22 ? 8 DC A OP1 1 ATOM 145 O OP2 . DC A 1 8 ? 29.779 7.857 19.298 1.00 34.38 ? 8 DC A OP2 1 ATOM 146 O "O5'" . DC A 1 8 ? 27.281 8.389 19.541 1.00 26.34 ? 8 DC A "O5'" 1 ATOM 147 C "C5'" . DC A 1 8 ? 26.315 9.392 19.973 1.00 25.34 ? 8 DC A "C5'" 1 ATOM 148 C "C4'" . DC A 1 8 ? 24.965 8.726 19.816 1.00 23.40 ? 8 DC A "C4'" 1 ATOM 149 O "O4'" . DC A 1 8 ? 24.801 8.414 18.458 1.00 20.77 ? 8 DC A "O4'" 1 ATOM 150 C "C3'" . DC A 1 8 ? 24.785 7.405 20.562 1.00 25.94 ? 8 DC A "C3'" 1 ATOM 151 O "O3'" . DC A 1 8 ? 24.252 7.581 21.873 1.00 35.15 ? 8 DC A "O3'" 1 ATOM 152 C "C2'" . DC A 1 8 ? 23.821 6.611 19.683 1.00 21.42 ? 8 DC A "C2'" 1 ATOM 153 C "C1'" . DC A 1 8 ? 23.741 7.425 18.419 1.00 19.90 ? 8 DC A "C1'" 1 ATOM 154 N N1 . DC A 1 8 ? 23.929 6.602 17.210 1.00 15.73 ? 8 DC A N1 1 ATOM 155 C C2 . DC A 1 8 ? 22.775 6.226 16.534 1.00 16.43 ? 8 DC A C2 1 ATOM 156 O O2 . DC A 1 8 ? 21.678 6.566 16.982 1.00 19.83 ? 8 DC A O2 1 ATOM 157 N N3 . DC A 1 8 ? 22.897 5.485 15.396 1.00 14.67 ? 8 DC A N3 1 ATOM 158 C C4 . DC A 1 8 ? 24.109 5.070 14.941 1.00 14.41 ? 8 DC A C4 1 ATOM 159 N N4 . DC A 1 8 ? 24.220 4.359 13.810 1.00 17.44 ? 8 DC A N4 1 ATOM 160 C C5 . DC A 1 8 ? 25.290 5.454 15.647 1.00 16.26 ? 8 DC A C5 1 ATOM 161 C C6 . DC A 1 8 ? 25.139 6.168 16.778 1.00 14.41 ? 8 DC A C6 1 HETATM 162 O O . HOH B 2 . ? 18.109 19.983 2.214 1.00 31.85 ? 9 HOH A O 1 HETATM 163 O O . HOH B 2 . ? 29.005 5.357 14.281 1.00 38.30 ? 10 HOH A O 1 HETATM 164 O O . HOH B 2 . ? 11.246 10.543 4.150 1.00 36.90 ? 11 HOH A O 1 HETATM 165 O O . HOH B 2 . ? 17.700 7.135 2.716 0.50 24.44 ? 12 HOH A O 1 HETATM 166 O O . HOH B 2 . ? 14.675 8.428 2.457 1.00 26.66 ? 13 HOH A O 1 HETATM 167 O O . HOH B 2 . ? 23.631 6.249 2.842 1.00 31.94 ? 14 HOH A O 1 HETATM 168 O O . HOH B 2 . ? 16.511 10.209 3.305 1.00 26.54 ? 15 HOH A O 1 HETATM 169 O O . HOH B 2 . ? 22.601 12.592 -2.342 1.00 28.01 ? 16 HOH A O 1 HETATM 170 O O . HOH B 2 . ? 31.059 5.713 2.819 0.50 26.95 ? 17 HOH A O 1 HETATM 171 O O . HOH B 2 . ? 30.956 5.518 10.497 0.50 27.06 ? 18 HOH A O 1 HETATM 172 O O . HOH B 2 . ? 34.111 6.592 5.375 1.00 41.38 ? 19 HOH A O 1 HETATM 173 O O . HOH B 2 . ? 24.054 10.917 -3.732 0.50 27.96 ? 20 HOH A O 1 HETATM 174 O O . HOH B 2 . ? 23.667 11.254 17.285 1.00 28.29 ? 21 HOH A O 1 HETATM 175 O O . HOH B 2 . ? 17.325 18.213 5.975 1.00 35.40 ? 22 HOH A O 1 HETATM 176 O O . HOH B 2 . ? 19.874 9.267 7.828 1.00 37.23 ? 23 HOH A O 1 HETATM 177 O O . HOH B 2 . ? 18.017 11.680 7.992 1.00 35.15 ? 24 HOH A O 1 HETATM 178 O O . HOH B 2 . ? 28.291 5.663 8.919 1.00 31.43 ? 25 HOH A O 1 HETATM 179 O O . HOH B 2 . ? 27.047 13.698 3.881 1.00 31.36 ? 26 HOH A O 1 HETATM 180 O O . HOH B 2 . ? 23.195 7.695 5.378 1.00 28.71 ? 27 HOH A O 1 HETATM 181 O O . HOH B 2 . ? 16.839 14.278 6.650 1.00 34.47 ? 28 HOH A O 1 HETATM 182 O O . HOH B 2 . ? 16.397 18.556 3.470 1.00 43.06 ? 29 HOH A O 1 HETATM 183 O O . HOH B 2 . ? 28.442 14.130 8.220 1.00 37.83 ? 30 HOH A O 1 HETATM 184 O O . HOH B 2 . ? 21.702 7.383 22.653 1.00 28.26 ? 31 HOH A O 1 HETATM 185 O O . HOH B 2 . ? 10.762 5.100 -0.714 0.75 32.62 ? 32 HOH A O 1 HETATM 186 O O . HOH B 2 . ? 13.750 3.894 -0.372 0.50 30.87 ? 33 HOH A O 1 HETATM 187 O O . HOH B 2 . ? 11.227 7.611 -0.479 1.00 31.14 ? 34 HOH A O 1 HETATM 188 O O . HOH B 2 . ? 16.649 21.502 0.330 1.00 36.57 ? 35 HOH A O 1 HETATM 189 O O . HOH B 2 . ? 18.902 20.153 7.286 1.00 31.26 ? 36 HOH A O 1 HETATM 190 O O . HOH B 2 . ? 15.006 15.819 3.753 1.00 44.10 ? 37 HOH A O 1 HETATM 191 O O . HOH B 2 . ? 16.981 10.488 5.527 0.50 16.67 ? 38 HOH A O 1 HETATM 192 O O . HOH B 2 . ? 12.931 12.363 -5.072 1.00 50.67 ? 39 HOH A O 1 HETATM 193 O O . HOH B 2 . ? 16.101 13.668 4.255 1.00 46.51 ? 40 HOH A O 1 HETATM 194 O O . HOH B 2 . ? 11.133 6.246 3.376 0.75 45.23 ? 41 HOH A O 1 HETATM 195 O O . HOH B 2 . ? 33.902 5.761 12.515 0.50 38.44 ? 42 HOH A O 1 HETATM 196 O O . HOH B 2 . ? 14.711 11.387 5.768 0.50 29.43 ? 43 HOH A O 1 HETATM 197 O O . HOH B 2 . ? 31.948 9.841 21.028 0.50 34.80 ? 44 HOH A O 1 HETATM 198 O O . HOH B 2 . ? 21.036 9.824 23.349 0.50 51.01 ? 45 HOH A O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 9 9 HOH HOH A . B 2 HOH 2 10 10 HOH HOH A . B 2 HOH 3 11 11 HOH HOH A . B 2 HOH 4 12 12 HOH HOH A . B 2 HOH 5 13 13 HOH HOH A . B 2 HOH 6 14 14 HOH HOH A . B 2 HOH 7 15 15 HOH HOH A . B 2 HOH 8 16 16 HOH HOH A . B 2 HOH 9 17 17 HOH HOH A . B 2 HOH 10 18 18 HOH HOH A . B 2 HOH 11 19 19 HOH HOH A . B 2 HOH 12 20 20 HOH HOH A . B 2 HOH 13 21 21 HOH HOH A . B 2 HOH 14 22 22 HOH HOH A . B 2 HOH 15 23 23 HOH HOH A . B 2 HOH 16 24 24 HOH HOH A . B 2 HOH 17 25 25 HOH HOH A . B 2 HOH 18 26 26 HOH HOH A . B 2 HOH 19 27 27 HOH HOH A . B 2 HOH 20 28 28 HOH HOH A . B 2 HOH 21 29 29 HOH HOH A . B 2 HOH 22 30 30 HOH HOH A . B 2 HOH 23 31 31 HOH HOH A . B 2 HOH 24 32 32 HOH HOH A . B 2 HOH 25 33 33 HOH HOH A . B 2 HOH 26 34 34 HOH HOH A . B 2 HOH 27 35 35 HOH HOH A . B 2 HOH 28 36 36 HOH HOH A . B 2 HOH 29 37 37 HOH HOH A . B 2 HOH 30 38 38 HOH HOH A . B 2 HOH 31 39 39 HOH HOH A . B 2 HOH 32 40 40 HOH HOH A . B 2 HOH 33 41 41 HOH HOH A . B 2 HOH 34 42 42 HOH HOH A . B 2 HOH 35 43 43 HOH HOH A . B 2 HOH 36 44 44 HOH HOH A . B 2 HOH 37 45 45 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 13.0851666667 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1993-04-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-03-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' audit_author 2 4 'Structure model' citation_author 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_audit_author.name' 2 4 'Structure model' '_citation_author.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 _software.date ? _software.type ? _software.location ? _software.language ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP1 A DT 2 ? ? O A HOH 34 ? ? 1.46 2 1 "C5'" A DT 2 ? ? O A HOH 34 ? ? 1.68 3 1 "O5'" A DT 2 ? ? O A HOH 34 ? ? 1.76 4 1 P A DT 2 ? ? O A HOH 34 ? ? 1.77 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DG 3 ? ? "O5'" A DG 3 ? ? 1.654 1.593 0.061 0.010 N 2 1 P A DC 6 ? ? "O5'" A DC 6 ? ? 1.529 1.593 -0.064 0.010 N 3 1 P A DC 8 ? ? "O5'" A DC 8 ? ? 1.660 1.593 0.067 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DT 2 ? ? P A DT 2 ? ? OP2 A DT 2 ? ? 119.54 110.70 8.84 1.20 N 2 1 N1 A DT 2 ? ? C2 A DT 2 ? ? O2 A DT 2 ? ? 117.46 123.10 -5.64 0.80 N 3 1 C5 A DT 2 ? ? C4 A DT 2 ? ? O4 A DT 2 ? ? 120.57 124.90 -4.33 0.70 N 4 1 "O3'" A DT 2 ? ? P A DG 3 ? ? OP2 A DG 3 ? ? 119.32 110.50 8.82 1.10 Y 5 1 "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? "C4'" A DG 3 ? ? 103.19 109.40 -6.21 0.80 N 6 1 N3 A DG 3 ? ? C2 A DG 3 ? ? N2 A DG 3 ? ? 115.65 119.90 -4.25 0.70 N 7 1 "O5'" A DT 4 ? ? "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? 102.75 109.40 -6.65 0.80 N 8 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.75 108.30 2.45 0.30 N 9 1 N1 A DT 4 ? ? C2 A DT 4 ? ? N3 A DT 4 ? ? 118.21 114.60 3.61 0.60 N 10 1 C2 A DT 4 ? ? N3 A DT 4 ? ? C4 A DT 4 ? ? 123.20 127.20 -4.00 0.60 N 11 1 C6 A DA 5 ? ? N1 A DA 5 ? ? C2 A DA 5 ? ? 122.44 118.60 3.84 0.60 N 12 1 N1 A DA 5 ? ? C2 A DA 5 ? ? N3 A DA 5 ? ? 124.35 129.30 -4.95 0.50 N 13 1 C6 A DA 7 ? ? N1 A DA 7 ? ? C2 A DA 7 ? ? 123.58 118.60 4.98 0.60 N 14 1 N1 A DA 7 ? ? C2 A DA 7 ? ? N3 A DA 7 ? ? 125.51 129.30 -3.79 0.50 N 15 1 C5 A DA 7 ? ? C6 A DA 7 ? ? N1 A DA 7 ? ? 113.93 117.70 -3.77 0.50 N 16 1 N3 A DC 8 ? ? C4 A DC 8 ? ? C5 A DC 8 ? ? 119.31 121.90 -2.59 0.40 N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1D78 'double helix' 1D78 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 12_555 -0.256 -0.154 -0.202 -14.499 -18.103 -0.598 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A DT 2 1_555 A DA 7 12_555 -0.068 -0.105 -0.005 -18.817 -8.337 -2.455 2 A_DT2:DA7_A A 2 ? A 7 ? 20 1 1 A DG 3 1_555 A DC 6 12_555 -0.145 -0.124 0.099 -8.749 -12.039 0.367 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1 1 A DT 4 1_555 A DA 5 12_555 -0.042 -0.146 0.232 -1.210 -13.329 -1.731 4 A_DT4:DA5_A A 4 ? A 5 ? 20 1 1 A DA 5 1_555 A DT 4 12_555 0.042 -0.146 0.232 1.210 -13.329 -1.731 5 A_DA5:DT4_A A 5 ? A 4 ? 20 1 1 A DC 6 1_555 A DG 3 12_555 0.145 -0.124 0.099 8.749 -12.039 0.367 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1 1 A DA 7 1_555 A DT 2 12_555 0.068 -0.105 -0.005 18.817 -8.337 -2.455 7 A_DA7:DT2_A A 7 ? A 2 ? 20 1 1 A DC 8 1_555 A DG 1 12_555 0.256 -0.154 -0.202 14.499 -18.103 -0.598 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 12_555 A DT 2 1_555 A DA 7 12_555 -0.587 -1.362 3.396 1.491 -0.341 35.958 -2.153 1.169 3.382 -0.553 -2.413 35.989 1 AA_DG1DT2:DA7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A DT 2 1_555 A DA 7 12_555 A DG 3 1_555 A DC 6 12_555 0.665 -0.972 3.138 -2.069 11.841 28.879 -3.824 -1.589 2.503 22.548 3.940 31.232 2 AA_DT2DG3:DC6DA7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DG 3 1_555 A DC 6 12_555 A DT 4 1_555 A DA 5 12_555 -0.530 -1.185 3.154 -1.803 5.781 32.333 -3.021 0.648 2.929 10.268 3.203 32.880 3 AA_DG3DT4:DA5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A DT 4 1_555 A DA 5 12_555 A DA 5 1_555 A DT 4 12_555 0.000 -1.118 3.100 0.000 13.697 32.000 -3.723 0.000 2.433 23.543 0.000 34.737 4 AA_DT4DA5:DT4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DA 5 1_555 A DT 4 12_555 A DC 6 1_555 A DG 3 12_555 0.530 -1.185 3.154 1.803 5.781 32.333 -3.021 -0.648 2.929 10.268 -3.203 32.880 5 AA_DA5DC6:DG3DT4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A DC 6 1_555 A DG 3 12_555 A DA 7 1_555 A DT 2 12_555 -0.666 -0.972 3.138 2.069 11.841 28.879 -3.824 1.589 2.503 22.548 -3.940 31.232 6 AA_DC6DA7:DT2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A DA 7 1_555 A DT 2 12_555 A DC 8 1_555 A DG 1 12_555 0.587 -1.362 3.396 -1.491 -0.341 35.958 -2.153 -1.169 3.382 -0.553 2.413 35.989 7 AA_DA7DC8:DG1DT2_AA A 7 ? A 2 ? A 8 ? A 1 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #
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