Acta Crystallographica Section D
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STRUCTURAL BIOLOGY
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STRUCTURAL
BIOLOGY
Volume 59
|
Part 8
|
August 2003
|
Pages 1377–1383
https://doi.org/10.1107/S0907444903011788
Open
access
ISSN: 2059-7983
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STRUCTURAL
BIOLOGY
Volume 59
|
Part 8
|
August 2003
|
Pages 1377–1383
https://doi.org/10.1107/S0907444903011788
Open
access
ISSN: 2059-7983
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data_1JO2 # _entry.id 1JO2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1JO2 pdb_00001jo2 10.2210/pdb1jo2/pdb NDB DD0041 ? ? RCSB RCSB013992 ? ? WWPDB D_1000013992 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-07-29 2 'Structure model' 1 1 2008-04-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1JO2 _pdbx_database_status.recvd_initial_deposition_date 2001-07-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shi, K.' 1 'Pan, B.' 2 'Sundaralingam, M.' 3 # _citation.id primary _citation.title 'Structure of a B-form DNA/RNA chimera (dC)(rG)d(ATCG) complexed with daunomycin at 1.5 A resolution.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 59 _citation.page_first 1377 _citation.page_last 1383 _citation.year 2003 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12876339 _citation.pdbx_database_id_DOI 10.1107/S0907444903011788 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shi, K.' 1 ? primary 'Pan, B.' 2 ? primary 'Sundaralingam, M.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*C)-R(P*G)-D(P*AP*TP*CP*G)-3'" 1825.217 1 ? ? ? ? 2 non-polymer syn DAUNOMYCIN 527.520 1 ? ? ? ? 3 water nat water 18.015 40 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polydeoxyribonucleotide/polyribonucleotide hybrid' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)G(DA)(DT)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGATCG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 DAUNOMYCIN DM1 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 G n 1 3 DA n 1 4 DT n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DM1 non-polymer . DAUNOMYCIN DAUNORUBICIN 'C27 H29 N O10' 527.520 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 G 2 2 2 G G A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DM1 1 7 7 DM1 DM1 A . C 3 HOH 1 101 101 HOH WAT A . C 3 HOH 2 102 102 HOH WAT A . C 3 HOH 3 103 103 HOH WAT A . C 3 HOH 4 104 104 HOH WAT A . C 3 HOH 5 105 105 HOH WAT A . C 3 HOH 6 106 106 HOH WAT A . C 3 HOH 7 107 107 HOH WAT A . C 3 HOH 8 108 108 HOH WAT A . C 3 HOH 9 109 109 HOH WAT A . C 3 HOH 10 110 110 HOH WAT A . C 3 HOH 11 111 111 HOH WAT A . C 3 HOH 12 112 112 HOH WAT A . C 3 HOH 13 113 113 HOH WAT A . C 3 HOH 14 114 114 HOH WAT A . C 3 HOH 15 115 115 HOH WAT A . C 3 HOH 16 116 116 HOH WAT A . C 3 HOH 17 117 117 HOH WAT A . C 3 HOH 18 118 118 HOH WAT A . C 3 HOH 19 119 119 HOH WAT A . C 3 HOH 20 120 120 HOH WAT A . C 3 HOH 21 121 121 HOH WAT A . C 3 HOH 22 122 122 HOH WAT A . C 3 HOH 23 123 123 HOH WAT A . C 3 HOH 24 124 124 HOH WAT A . C 3 HOH 25 125 125 HOH WAT A . C 3 HOH 26 127 127 HOH WAT A . C 3 HOH 27 128 128 HOH WAT A . C 3 HOH 28 129 129 HOH WAT A . C 3 HOH 29 130 130 HOH WAT A . C 3 HOH 30 131 131 HOH WAT A . C 3 HOH 31 132 132 HOH WAT A . C 3 HOH 32 133 133 HOH WAT A . C 3 HOH 33 134 134 HOH WAT A . C 3 HOH 34 135 135 HOH WAT A . C 3 HOH 35 136 136 HOH WAT A . C 3 HOH 36 137 137 HOH WAT A . C 3 HOH 37 138 138 HOH WAT A . C 3 HOH 38 139 139 HOH WAT A . C 3 HOH 39 140 140 HOH WAT A . C 3 HOH 40 141 141 HOH WAT A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SCALEPACK 'data scaling' . ? 1 CNS refinement . ? 2 # _cell.entry_id 1JO2 _cell.length_a 28.05 _cell.length_b 28.05 _cell.length_c 53.16 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1JO2 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # _exptl.entry_id 1JO2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.77 _exptl_crystal.density_percent_sol 55.55 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'magnesium chloride, cacodylate, MPD, pH 7.00, EVAPORATION, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 MgCl2 ? ? ? 1 2 1 cacodylate ? ? ? 1 3 1 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 293.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1996-06-24 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.54 _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 1JO2 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 10.000 _reflns.d_resolution_high 1.500 _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 14.6 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1JO2 _refine.ls_number_reflns_obs 2699 _refine.ls_number_reflns_all 2778 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF 2.00 _refine.pdbx_data_cutoff_low_absF 2.00 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 74.3 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.198 _refine.ls_R_factor_R_free 0.233 _refine.ls_R_factor_R_free_error 0.015 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.00 _refine.ls_number_reflns_R_free 256 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 22.1 _refine.aniso_B[1][1] 0.12 _refine.aniso_B[2][2] 0.12 _refine.aniso_B[3][3] -0.24 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1JO2 _refine_analyze.Luzzati_coordinate_error_obs 0.19 _refine_analyze.Luzzati_sigma_a_obs 0.16 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.21 _refine_analyze.Luzzati_sigma_a_free 0.14 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 121 _refine_hist.pdbx_number_atoms_ligand 38 _refine_hist.number_atoms_solvent 40 _refine_hist.number_atoms_total 199 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function o_bond_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? o_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? o_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? o_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? o_dihedral_angle_d 17.5 ? ? ? 'X-RAY DIFFRACTION' ? o_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? o_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? o_improper_angle_d 1.94 ? ? ? 'X-RAY DIFFRACTION' ? o_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? o_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? o_mcbond_it 0.40 1.50 ? ? 'X-RAY DIFFRACTION' ? o_mcangle_it 0.69 2.00 ? ? 'X-RAY DIFFRACTION' ? o_scbond_it 0.00 2.00 ? ? 'X-RAY DIFFRACTION' ? o_scangle_it 0.00 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.59 _refine_ls_shell.number_reflns_R_work 112 _refine_ls_shell.R_factor_R_work 0.286 _refine_ls_shell.percent_reflns_obs 21.2 _refine_ls_shell.R_factor_R_free 0.258 _refine_ls_shell.R_factor_R_free_error 0.072 _refine_ls_shell.percent_reflns_R_free 10.4 _refine_ls_shell.number_reflns_R_free 13 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1JO2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1JO2 _struct.title 'Crystal Structure of the B-DNA Hexamer (CgATCG).Daunomycin Complex Containing a Ribose at the Intercalation Site' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1JO2 _struct_keywords.pdbx_keywords 'DNA, RNA' _struct_keywords.text 'intercalation, DNA/RNA chimer, DNA, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1JO2 _struct_ref.pdbx_db_accession 1JO2 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1JO2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1JO2 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 28.0500000000 -1.0000000000 0.0000000000 0.0000000000 28.0500000000 0.0000000000 0.0000000000 -1.0000000000 26.5800000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A G 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A G 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A G 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 3 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 3 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 4 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 4 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A G 2 N1 ? ? A DC 5 A G 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A G 2 O6 ? ? A DC 5 A G 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A G 2 N2 ? ? A DC 5 A G 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DM1 7 ? 12 'BINDING SITE FOR RESIDUE DM1 A 7' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 DC A 1 ? DC A 1 . ? 1_555 ? 2 AC1 12 G A 2 ? G A 2 . ? 1_555 ? 3 AC1 12 DA A 3 ? DA A 3 . ? 1_555 ? 4 AC1 12 DT A 4 ? DT A 4 . ? 8_665 ? 5 AC1 12 DC A 5 ? DC A 5 . ? 8_665 ? 6 AC1 12 DG A 6 ? DG A 6 . ? 8_665 ? 7 AC1 12 HOH C . ? HOH A 102 . ? 1_555 ? 8 AC1 12 HOH C . ? HOH A 110 . ? 1_555 ? 9 AC1 12 HOH C . ? HOH A 111 . ? 1_555 ? 10 AC1 12 HOH C . ? HOH A 113 . ? 1_555 ? 11 AC1 12 HOH C . ? HOH A 123 . ? 1_555 ? 12 AC1 12 HOH C . ? HOH A 135 . ? 1_555 ? # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DC _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 5 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.090 _pdbx_validate_planes.type 'SIDE CHAIN' # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'INTERCALATION, GROOVE BINDER' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DM1 C1 C Y N 108 DM1 C2 C Y N 109 DM1 C3 C Y N 110 DM1 C4 C Y N 111 DM1 O4 O N N 112 DM1 C5 C Y N 113 DM1 C6 C N N 114 DM1 O6 O N N 115 DM1 C7 C Y N 116 DM1 C8 C Y N 117 DM1 O8 O N N 118 DM1 C9 C Y N 119 DM1 C10 C N S 120 DM1 O10 O N N 121 DM1 C11 C N N 122 DM1 C12 C N S 123 DM1 O12 O N N 124 DM1 C13 C N N 125 DM1 O13 O N N 126 DM1 C14 C N N 127 DM1 C15 C N N 128 DM1 C16 C Y N 129 DM1 C17 C Y N 130 DM1 O17 O N N 131 DM1 C18 C Y N 132 DM1 C19 C N N 133 DM1 O19 O N N 134 DM1 C20 C Y N 135 DM1 C21 C N N 136 DM1 "C1'" C N R 137 DM1 "C2'" C N N 138 DM1 "C3'" C N S 139 DM1 "N3'" N N N 140 DM1 "C4'" C N S 141 DM1 "O4'" O N N 142 DM1 "C5'" C N S 143 DM1 "O5'" O N N 144 DM1 "C6'" C N N 145 DM1 H1 H N N 146 DM1 H2 H N N 147 DM1 H3 H N N 148 DM1 HO8 H N N 149 DM1 H10 H N N 150 DM1 H111 H N N 151 DM1 H112 H N N 152 DM1 HO12 H N N 153 DM1 H141 H N N 154 DM1 H142 H N N 155 DM1 H143 H N N 156 DM1 H151 H N N 157 DM1 H152 H N N 158 DM1 HO17 H N N 159 DM1 H211 H N N 160 DM1 H212 H N N 161 DM1 H213 H N N 162 DM1 "H1'" H N N 163 DM1 "H2'1" H N N 164 DM1 "H2'2" H N N 165 DM1 "H3'" H N N 166 DM1 "HN'1" H N N 167 DM1 "HN'2" H N N 168 DM1 "H4'" H N N 169 DM1 "HO4'" H N N 170 DM1 "H5'" H N N 171 DM1 "H6'1" H N N 172 DM1 "H6'2" H N N 173 DM1 "H6'3" H N N 174 DT OP3 O N N 175 DT P P N N 176 DT OP1 O N N 177 DT OP2 O N N 178 DT "O5'" O N N 179 DT "C5'" C N N 180 DT "C4'" C N R 181 DT "O4'" O N N 182 DT "C3'" C N S 183 DT "O3'" O N N 184 DT "C2'" C N N 185 DT "C1'" C N R 186 DT N1 N N N 187 DT C2 C N N 188 DT O2 O N N 189 DT N3 N N N 190 DT C4 C N N 191 DT O4 O N N 192 DT C5 C N N 193 DT C7 C N N 194 DT C6 C N N 195 DT HOP3 H N N 196 DT HOP2 H N N 197 DT "H5'" H N N 198 DT "H5''" H N N 199 DT "H4'" H N N 200 DT "H3'" H N N 201 DT "HO3'" H N N 202 DT "H2'" H N N 203 DT "H2''" H N N 204 DT "H1'" H N N 205 DT H3 H N N 206 DT H71 H N N 207 DT H72 H N N 208 DT H73 H N N 209 DT H6 H N N 210 G OP3 O N N 211 G P P N N 212 G OP1 O N N 213 G OP2 O N N 214 G "O5'" O N N 215 G "C5'" C N N 216 G "C4'" C N R 217 G "O4'" O N N 218 G "C3'" C N S 219 G "O3'" O N N 220 G "C2'" C N R 221 G "O2'" O N N 222 G "C1'" C N R 223 G N9 N Y N 224 G C8 C Y N 225 G N7 N Y N 226 G C5 C Y N 227 G C6 C N N 228 G O6 O N N 229 G N1 N N N 230 G C2 C N N 231 G N2 N N N 232 G N3 N N N 233 G C4 C Y N 234 G HOP3 H N N 235 G HOP2 H N N 236 G "H5'" H N N 237 G "H5''" H N N 238 G "H4'" H N N 239 G "H3'" H N N 240 G "HO3'" H N N 241 G "H2'" H N N 242 G "HO2'" H N N 243 G "H1'" H N N 244 G H8 H N N 245 G H1 H N N 246 G H21 H N N 247 G H22 H N N 248 HOH O O N N 249 HOH H1 H N N 250 HOH H2 H N N 251 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DM1 C1 C2 doub Y N 113 DM1 C1 C20 sing Y N 114 DM1 C1 H1 sing N N 115 DM1 C2 C3 sing Y N 116 DM1 C2 H2 sing N N 117 DM1 C3 C4 doub Y N 118 DM1 C3 H3 sing N N 119 DM1 C4 O4 sing N N 120 DM1 C4 C5 sing Y N 121 DM1 O4 C21 sing N N 122 DM1 C5 C6 sing N N 123 DM1 C5 C20 doub Y N 124 DM1 C6 O6 doub N N 125 DM1 C6 C7 sing N N 126 DM1 C7 C8 doub Y N 127 DM1 C7 C18 sing Y N 128 DM1 C8 O8 sing N N 129 DM1 C8 C9 sing Y N 130 DM1 O8 HO8 sing N N 131 DM1 C9 C10 sing N N 132 DM1 C9 C16 doub Y N 133 DM1 C10 O10 sing N N 134 DM1 C10 C11 sing N N 135 DM1 C10 H10 sing N N 136 DM1 O10 "C1'" sing N N 137 DM1 C11 C12 sing N N 138 DM1 C11 H111 sing N N 139 DM1 C11 H112 sing N N 140 DM1 C12 O12 sing N N 141 DM1 C12 C13 sing N N 142 DM1 C12 C15 sing N N 143 DM1 O12 HO12 sing N N 144 DM1 C13 O13 doub N N 145 DM1 C13 C14 sing N N 146 DM1 C14 H141 sing N N 147 DM1 C14 H142 sing N N 148 DM1 C14 H143 sing N N 149 DM1 C15 C16 sing N N 150 DM1 C15 H151 sing N N 151 DM1 C15 H152 sing N N 152 DM1 C16 C17 sing Y N 153 DM1 C17 O17 sing N N 154 DM1 C17 C18 doub Y N 155 DM1 O17 HO17 sing N N 156 DM1 C18 C19 sing N N 157 DM1 C19 O19 doub N N 158 DM1 C19 C20 sing N N 159 DM1 C21 H211 sing N N 160 DM1 C21 H212 sing N N 161 DM1 C21 H213 sing N N 162 DM1 "C1'" "C2'" sing N N 163 DM1 "C1'" "O5'" sing N N 164 DM1 "C1'" "H1'" sing N N 165 DM1 "C2'" "C3'" sing N N 166 DM1 "C2'" "H2'1" sing N N 167 DM1 "C2'" "H2'2" sing N N 168 DM1 "C3'" "N3'" sing N N 169 DM1 "C3'" "C4'" sing N N 170 DM1 "C3'" "H3'" sing N N 171 DM1 "N3'" "HN'1" sing N N 172 DM1 "N3'" "HN'2" sing N N 173 DM1 "C4'" "O4'" sing N N 174 DM1 "C4'" "C5'" sing N N 175 DM1 "C4'" "H4'" sing N N 176 DM1 "O4'" "HO4'" sing N N 177 DM1 "C5'" "O5'" sing N N 178 DM1 "C5'" "C6'" sing N N 179 DM1 "C5'" "H5'" sing N N 180 DM1 "C6'" "H6'1" sing N N 181 DM1 "C6'" "H6'2" sing N N 182 DM1 "C6'" "H6'3" sing N N 183 DT OP3 P sing N N 184 DT OP3 HOP3 sing N N 185 DT P OP1 doub N N 186 DT P OP2 sing N N 187 DT P "O5'" sing N N 188 DT OP2 HOP2 sing N N 189 DT "O5'" "C5'" sing N N 190 DT "C5'" "C4'" sing N N 191 DT "C5'" "H5'" sing N N 192 DT "C5'" "H5''" sing N N 193 DT "C4'" "O4'" sing N N 194 DT "C4'" "C3'" sing N N 195 DT "C4'" "H4'" sing N N 196 DT "O4'" "C1'" sing N N 197 DT "C3'" "O3'" sing N N 198 DT "C3'" "C2'" sing N N 199 DT "C3'" "H3'" sing N N 200 DT "O3'" "HO3'" sing N N 201 DT "C2'" "C1'" sing N N 202 DT "C2'" "H2'" sing N N 203 DT "C2'" "H2''" sing N N 204 DT "C1'" N1 sing N N 205 DT "C1'" "H1'" sing N N 206 DT N1 C2 sing N N 207 DT N1 C6 sing N N 208 DT C2 O2 doub N N 209 DT C2 N3 sing N N 210 DT N3 C4 sing N N 211 DT N3 H3 sing N N 212 DT C4 O4 doub N N 213 DT C4 C5 sing N N 214 DT C5 C7 sing N N 215 DT C5 C6 doub N N 216 DT C7 H71 sing N N 217 DT C7 H72 sing N N 218 DT C7 H73 sing N N 219 DT C6 H6 sing N N 220 G OP3 P sing N N 221 G OP3 HOP3 sing N N 222 G P OP1 doub N N 223 G P OP2 sing N N 224 G P "O5'" sing N N 225 G OP2 HOP2 sing N N 226 G "O5'" "C5'" sing N N 227 G "C5'" "C4'" sing N N 228 G "C5'" "H5'" sing N N 229 G "C5'" "H5''" sing N N 230 G "C4'" "O4'" sing N N 231 G "C4'" "C3'" sing N N 232 G "C4'" "H4'" sing N N 233 G "O4'" "C1'" sing N N 234 G "C3'" "O3'" sing N N 235 G "C3'" "C2'" sing N N 236 G "C3'" "H3'" sing N N 237 G "O3'" "HO3'" sing N N 238 G "C2'" "O2'" sing N N 239 G "C2'" "C1'" sing N N 240 G "C2'" "H2'" sing N N 241 G "O2'" "HO2'" sing N N 242 G "C1'" N9 sing N N 243 G "C1'" "H1'" sing N N 244 G N9 C8 sing Y N 245 G N9 C4 sing Y N 246 G C8 N7 doub Y N 247 G C8 H8 sing N N 248 G N7 C5 sing Y N 249 G C5 C6 sing N N 250 G C5 C4 doub Y N 251 G C6 O6 doub N N 252 G C6 N1 sing N N 253 G N1 C2 sing N N 254 G N1 H1 sing N N 255 G C2 N2 sing N N 256 G C2 N3 doub N N 257 G N2 H21 sing N N 258 G N2 H22 sing N N 259 G N3 C4 sing N N 260 HOH O H1 sing N N 261 HOH O H2 sing N N 262 # _ndb_struct_conf_na.entry_id 1JO2 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 6 8_665 0.211 -0.123 -0.021 8.887 1.882 -0.597 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1 1 A G 2 1_555 A DC 5 8_665 -0.201 0.013 -0.430 -20.355 4.981 2.014 2 A_G2:DC5_A A 2 ? A 5 ? 19 1 1 A DA 3 1_555 A DT 4 8_665 0.012 -0.130 0.029 -9.746 -1.771 1.760 3 A_DA3:DT4_A A 3 ? A 4 ? 20 1 1 A DT 4 1_555 A DA 3 8_665 -0.012 -0.130 0.029 9.746 -1.771 1.760 4 A_DT4:DA3_A A 4 ? A 3 ? 20 1 1 A DC 5 1_555 A G 2 8_665 0.201 0.013 -0.430 20.355 4.981 2.014 5 A_DC5:G2_A A 5 ? A 2 ? 19 1 1 A DG 6 1_555 A DC 1 8_665 -0.211 -0.123 -0.021 -8.887 1.882 -0.597 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 6 8_665 A G 2 1_555 A DC 5 8_665 1.366 1.166 7.200 1.577 -4.423 33.587 3.555 -1.788 7.048 -7.608 -2.713 33.904 1 AA_DC1G2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ? 1 A G 2 1_555 A DC 5 8_665 A DA 3 1_555 A DT 4 8_665 -1.363 0.369 3.180 -4.255 0.382 31.959 0.597 1.697 3.333 0.691 7.686 32.236 2 AA_G2DA3:DT4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ? 1 A DA 3 1_555 A DT 4 8_665 A DT 4 1_555 A DA 3 8_665 0.000 -0.595 2.974 0.000 4.041 32.292 -1.697 0.000 2.880 7.230 0.000 32.537 3 AA_DA3DT4:DA3DT4_AA A 3 ? A 4 ? A 4 ? A 3 ? 1 A DT 4 1_555 A DA 3 8_665 A DC 5 1_555 A G 2 8_665 1.363 0.369 3.180 4.256 0.382 31.959 0.597 -1.697 3.333 0.690 -7.686 32.236 4 AA_DT4DC5:G2DA3_AA A 4 ? A 3 ? A 5 ? A 2 ? 1 A DC 5 1_555 A G 2 8_665 A DG 6 1_555 A DC 1 8_665 -1.366 1.166 7.200 -1.577 -4.423 33.587 3.555 1.788 7.048 -7.608 2.713 33.904 5 AA_DC5DG6:DC1G2_AA A 5 ? A 2 ? A 6 ? A 1 ? # _atom_sites.entry_id 1JO2 _atom_sites.fract_transf_matrix[1][1] 0.035651 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035651 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018811 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 9.430 20.135 22.839 1.00 19.29 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? 9.762 21.130 23.763 1.00 18.50 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 11.203 21.059 24.192 1.00 18.33 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 11.423 19.912 25.047 1.00 17.83 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 12.210 20.944 23.051 1.00 18.32 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 13.382 21.661 23.408 1.00 19.02 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 12.527 19.459 23.016 1.00 17.76 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 12.442 19.075 24.481 1.00 17.27 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 12.011 17.691 24.643 1.00 16.52 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? 12.988 16.694 24.794 1.00 16.17 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? 14.188 17.028 24.837 1.00 15.99 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? 12.603 15.420 24.885 1.00 15.96 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? 11.310 15.101 24.843 1.00 16.01 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? 10.978 13.815 24.916 1.00 15.82 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? 10.291 16.098 24.719 1.00 16.06 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? 10.685 17.361 24.621 1.00 16.28 ? 1 DC A C6 1 ATOM 17 P P . G A 1 2 ? 13.916 22.823 22.462 1.00 19.61 ? 2 G A P 1 ATOM 18 O OP1 . G A 1 2 ? 14.940 23.545 23.254 1.00 19.75 ? 2 G A OP1 1 ATOM 19 O OP2 . G A 1 2 ? 12.759 23.542 21.889 1.00 19.97 ? 2 G A OP2 1 ATOM 20 O "O5'" . G A 1 2 ? 14.665 22.068 21.273 1.00 19.81 ? 2 G A "O5'" 1 ATOM 21 C "C5'" . G A 1 2 ? 15.892 21.353 21.469 1.00 19.94 ? 2 G A "C5'" 1 ATOM 22 C "C4'" . G A 1 2 ? 16.148 20.525 20.243 1.00 20.14 ? 2 G A "C4'" 1 ATOM 23 O "O4'" . G A 1 2 ? 15.208 19.453 20.191 1.00 19.64 ? 2 G A "O4'" 1 ATOM 24 C "C3'" . G A 1 2 ? 15.988 21.333 18.948 1.00 20.46 ? 2 G A "C3'" 1 ATOM 25 O "O3'" . G A 1 2 ? 17.131 20.913 18.213 1.00 21.50 ? 2 G A "O3'" 1 ATOM 26 C "C2'" . G A 1 2 ? 14.791 20.692 18.242 1.00 19.89 ? 2 G A "C2'" 1 ATOM 27 O "O2'" . G A 1 2 ? 14.815 20.602 16.842 1.00 20.72 ? 2 G A "O2'" 1 ATOM 28 C "C1'" . G A 1 2 ? 14.814 19.298 18.863 1.00 19.25 ? 2 G A "C1'" 1 ATOM 29 N N9 . G A 1 2 ? 13.625 18.475 18.779 1.00 18.31 ? 2 G A N9 1 ATOM 30 C C8 . G A 1 2 ? 12.301 18.847 18.827 1.00 18.09 ? 2 G A C8 1 ATOM 31 N N7 . G A 1 2 ? 11.486 17.841 18.652 1.00 17.86 ? 2 G A N7 1 ATOM 32 C C5 . G A 1 2 ? 12.335 16.748 18.473 1.00 17.61 ? 2 G A C5 1 ATOM 33 C C6 . G A 1 2 ? 12.044 15.387 18.228 1.00 17.40 ? 2 G A C6 1 ATOM 34 O O6 . G A 1 2 ? 10.942 14.857 18.078 1.00 17.22 ? 2 G A O6 1 ATOM 35 N N1 . G A 1 2 ? 13.212 14.611 18.168 1.00 17.25 ? 2 G A N1 1 ATOM 36 C C2 . G A 1 2 ? 14.490 15.091 18.343 1.00 17.26 ? 2 G A C2 1 ATOM 37 N N2 . G A 1 2 ? 15.488 14.186 18.348 1.00 17.11 ? 2 G A N2 1 ATOM 38 N N3 . G A 1 2 ? 14.775 16.359 18.534 1.00 17.39 ? 2 G A N3 1 ATOM 39 C C4 . G A 1 2 ? 13.650 17.127 18.589 1.00 17.81 ? 2 G A C4 1 ATOM 40 P P . DA A 1 3 ? 18.005 21.927 17.363 1.00 22.35 ? 3 DA A P 1 ATOM 41 O OP1 . DA A 1 3 ? 18.777 22.721 18.323 1.00 22.48 ? 3 DA A OP1 1 ATOM 42 O OP2 . DA A 1 3 ? 17.226 22.585 16.297 1.00 22.57 ? 3 DA A OP2 1 ATOM 43 O "O5'" . DA A 1 3 ? 19.035 20.930 16.700 1.00 21.47 ? 3 DA A "O5'" 1 ATOM 44 C "C5'" . DA A 1 3 ? 19.977 20.281 17.529 1.00 20.06 ? 3 DA A "C5'" 1 ATOM 45 C "C4'" . DA A 1 3 ? 20.249 18.899 17.004 1.00 19.14 ? 3 DA A "C4'" 1 ATOM 46 O "O4'" . DA A 1 3 ? 19.067 18.074 17.131 1.00 18.37 ? 3 DA A "O4'" 1 ATOM 47 C "C3'" . DA A 1 3 ? 20.642 18.882 15.532 1.00 18.89 ? 3 DA A "C3'" 1 ATOM 48 O "O3'" . DA A 1 3 ? 21.800 18.098 15.382 1.00 19.26 ? 3 DA A "O3'" 1 ATOM 49 C "C2'" . DA A 1 3 ? 19.462 18.236 14.830 1.00 18.30 ? 3 DA A "C2'" 1 ATOM 50 C "C1'" . DA A 1 3 ? 18.859 17.362 15.921 1.00 17.80 ? 3 DA A "C1'" 1 ATOM 51 N N9 . DA A 1 3 ? 17.418 17.213 15.719 1.00 16.89 ? 3 DA A N9 1 ATOM 52 C C8 . DA A 1 3 ? 16.472 18.203 15.693 1.00 16.68 ? 3 DA A C8 1 ATOM 53 N N7 . DA A 1 3 ? 15.269 17.770 15.421 1.00 16.44 ? 3 DA A N7 1 ATOM 54 C C5 . DA A 1 3 ? 15.427 16.402 15.294 1.00 16.26 ? 3 DA A C5 1 ATOM 55 C C6 . DA A 1 3 ? 14.500 15.378 15.029 1.00 16.03 ? 3 DA A C6 1 ATOM 56 N N6 . DA A 1 3 ? 13.198 15.610 14.898 1.00 15.67 ? 3 DA A N6 1 ATOM 57 N N1 . DA A 1 3 ? 14.969 14.118 14.925 1.00 15.91 ? 3 DA A N1 1 ATOM 58 C C2 . DA A 1 3 ? 16.279 13.906 15.105 1.00 16.06 ? 3 DA A C2 1 ATOM 59 N N3 . DA A 1 3 ? 17.247 14.793 15.393 1.00 16.19 ? 3 DA A N3 1 ATOM 60 C C4 . DA A 1 3 ? 16.739 16.038 15.467 1.00 16.43 ? 3 DA A C4 1 ATOM 61 P P . DT A 1 4 ? 22.551 18.057 13.971 1.00 19.68 ? 4 DT A P 1 ATOM 62 O OP1 . DT A 1 4 ? 23.984 17.883 14.318 1.00 20.01 ? 4 DT A OP1 1 ATOM 63 O OP2 . DT A 1 4 ? 22.115 19.091 13.056 1.00 19.75 ? 4 DT A OP2 1 ATOM 64 O "O5'" . DT A 1 4 ? 22.015 16.714 13.324 1.00 19.10 ? 4 DT A "O5'" 1 ATOM 65 C "C5'" . DT A 1 4 ? 22.361 15.483 13.896 1.00 18.26 ? 4 DT A "C5'" 1 ATOM 66 C "C4'" . DT A 1 4 ? 21.812 14.360 13.057 1.00 17.60 ? 4 DT A "C4'" 1 ATOM 67 O "O4'" . DT A 1 4 ? 20.374 14.418 13.097 1.00 16.93 ? 4 DT A "O4'" 1 ATOM 68 C "C3'" . DT A 1 4 ? 22.213 14.374 11.583 1.00 17.57 ? 4 DT A "C3'" 1 ATOM 69 O "O3'" . DT A 1 4 ? 22.697 13.069 11.265 1.00 18.24 ? 4 DT A "O3'" 1 ATOM 70 C "C2'" . DT A 1 4 ? 20.907 14.674 10.842 1.00 16.84 ? 4 DT A "C2'" 1 ATOM 71 C "C1'" . DT A 1 4 ? 19.845 14.175 11.814 1.00 16.32 ? 4 DT A "C1'" 1 ATOM 72 N N1 . DT A 1 4 ? 18.526 14.833 11.770 1.00 15.62 ? 4 DT A N1 1 ATOM 73 C C2 . DT A 1 4 ? 17.396 14.034 11.730 1.00 15.32 ? 4 DT A C2 1 ATOM 74 O O2 . DT A 1 4 ? 17.449 12.820 11.675 1.00 15.41 ? 4 DT A O2 1 ATOM 75 N N3 . DT A 1 4 ? 16.212 14.711 11.777 1.00 14.93 ? 4 DT A N3 1 ATOM 76 C C4 . DT A 1 4 ? 16.038 16.077 11.853 1.00 15.04 ? 4 DT A C4 1 ATOM 77 O O4 . DT A 1 4 ? 14.922 16.551 11.872 1.00 14.70 ? 4 DT A O4 1 ATOM 78 C C5 . DT A 1 4 ? 17.250 16.853 11.885 1.00 15.03 ? 4 DT A C5 1 ATOM 79 C C7 . DT A 1 4 ? 17.149 18.342 11.984 1.00 15.14 ? 4 DT A C7 1 ATOM 80 C C6 . DT A 1 4 ? 18.419 16.209 11.825 1.00 15.24 ? 4 DT A C6 1 ATOM 81 P P . DC A 1 5 ? 23.587 12.847 9.961 1.00 18.67 ? 5 DC A P 1 ATOM 82 O OP1 . DC A 1 5 ? 24.355 11.584 10.169 1.00 19.16 ? 5 DC A OP1 1 ATOM 83 O OP2 . DC A 1 5 ? 24.278 14.057 9.527 1.00 18.98 ? 5 DC A OP2 1 ATOM 84 O "O5'" . DC A 1 5 ? 22.494 12.508 8.849 1.00 18.72 ? 5 DC A "O5'" 1 ATOM 85 C "C5'" . DC A 1 5 ? 21.760 11.316 8.935 1.00 18.14 ? 5 DC A "C5'" 1 ATOM 86 C "C4'" . DC A 1 5 ? 20.621 11.356 7.951 1.00 18.14 ? 5 DC A "C4'" 1 ATOM 87 O "O4'" . DC A 1 5 ? 19.608 12.257 8.447 1.00 17.80 ? 5 DC A "O4'" 1 ATOM 88 C "C3'" . DC A 1 5 ? 21.003 11.864 6.560 1.00 18.14 ? 5 DC A "C3'" 1 ATOM 89 O "O3'" . DC A 1 5 ? 20.344 11.050 5.594 1.00 18.47 ? 5 DC A "O3'" 1 ATOM 90 C "C2'" . DC A 1 5 ? 20.384 13.254 6.500 1.00 17.81 ? 5 DC A "C2'" 1 ATOM 91 C "C1'" . DC A 1 5 ? 19.162 13.030 7.358 1.00 17.60 ? 5 DC A "C1'" 1 ATOM 92 N N1 . DC A 1 5 ? 18.470 14.220 7.872 1.00 17.16 ? 5 DC A N1 1 ATOM 93 C C2 . DC A 1 5 ? 17.124 14.090 8.184 1.00 17.06 ? 5 DC A C2 1 ATOM 94 O O2 . DC A 1 5 ? 16.632 12.970 8.206 1.00 16.78 ? 5 DC A O2 1 ATOM 95 N N3 . DC A 1 5 ? 16.401 15.181 8.466 1.00 16.90 ? 5 DC A N3 1 ATOM 96 C C4 . DC A 1 5 ? 16.990 16.379 8.495 1.00 16.97 ? 5 DC A C4 1 ATOM 97 N N4 . DC A 1 5 ? 16.213 17.446 8.694 1.00 16.74 ? 5 DC A N4 1 ATOM 98 C C5 . DC A 1 5 ? 18.396 16.531 8.293 1.00 17.01 ? 5 DC A C5 1 ATOM 99 C C6 . DC A 1 5 ? 19.093 15.431 7.980 1.00 17.22 ? 5 DC A C6 1 ATOM 100 P P . DG A 1 6 ? 21.204 10.068 4.673 1.00 18.92 ? 6 DG A P 1 ATOM 101 O OP1 . DG A 1 6 ? 21.907 9.133 5.608 1.00 19.01 ? 6 DG A OP1 1 ATOM 102 O OP2 . DG A 1 6 ? 21.983 10.858 3.716 1.00 18.80 ? 6 DG A OP2 1 ATOM 103 O "O5'" . DG A 1 6 ? 20.090 9.231 3.899 1.00 18.08 ? 6 DG A "O5'" 1 ATOM 104 C "C5'" . DG A 1 6 ? 19.198 8.359 4.587 1.00 17.14 ? 6 DG A "C5'" 1 ATOM 105 C "C4'" . DG A 1 6 ? 18.179 7.782 3.632 1.00 16.36 ? 6 DG A "C4'" 1 ATOM 106 O "O4'" . DG A 1 6 ? 17.249 8.806 3.227 1.00 15.87 ? 6 DG A "O4'" 1 ATOM 107 C "C3'" . DG A 1 6 ? 18.722 7.193 2.333 1.00 15.84 ? 6 DG A "C3'" 1 ATOM 108 O "O3'" . DG A 1 6 ? 17.829 6.160 1.943 1.00 15.68 ? 6 DG A "O3'" 1 ATOM 109 C "C2'" . DG A 1 6 ? 18.619 8.353 1.357 1.00 15.57 ? 6 DG A "C2'" 1 ATOM 110 C "C1'" . DG A 1 6 ? 17.372 9.099 1.843 1.00 15.45 ? 6 DG A "C1'" 1 ATOM 111 N N9 . DG A 1 6 ? 17.433 10.556 1.725 1.00 15.02 ? 6 DG A N9 1 ATOM 112 C C8 . DG A 1 6 ? 18.538 11.365 1.755 1.00 14.92 ? 6 DG A C8 1 ATOM 113 N N7 . DG A 1 6 ? 18.240 12.642 1.714 1.00 14.95 ? 6 DG A N7 1 ATOM 114 C C5 . DG A 1 6 ? 16.851 12.663 1.626 1.00 14.67 ? 6 DG A C5 1 ATOM 115 C C6 . DG A 1 6 ? 15.943 13.767 1.575 1.00 14.62 ? 6 DG A C6 1 ATOM 116 O O6 . DG A 1 6 ? 16.205 14.981 1.614 1.00 14.61 ? 6 DG A O6 1 ATOM 117 N N1 . DG A 1 6 ? 14.619 13.332 1.506 1.00 14.46 ? 6 DG A N1 1 ATOM 118 C C2 . DG A 1 6 ? 14.219 12.011 1.509 1.00 14.53 ? 6 DG A C2 1 ATOM 119 N N2 . DG A 1 6 ? 12.910 11.767 1.459 1.00 14.39 ? 6 DG A N2 1 ATOM 120 N N3 . DG A 1 6 ? 15.056 10.987 1.564 1.00 14.45 ? 6 DG A N3 1 ATOM 121 C C4 . DG A 1 6 ? 16.343 11.390 1.617 1.00 14.77 ? 6 DG A C4 1 HETATM 122 C C1 . DM1 B 2 . ? 9.503 12.730 21.527 1.00 16.80 ? 7 DM1 A C1 1 HETATM 123 C C2 . DM1 B 2 . ? 8.792 11.512 21.515 1.00 16.90 ? 7 DM1 A C2 1 HETATM 124 C C3 . DM1 B 2 . ? 9.470 10.277 21.573 1.00 17.01 ? 7 DM1 A C3 1 HETATM 125 C C4 . DM1 B 2 . ? 10.898 10.230 21.636 1.00 16.74 ? 7 DM1 A C4 1 HETATM 126 O O4 . DM1 B 2 . ? 11.586 9.032 21.691 1.00 17.01 ? 7 DM1 A O4 1 HETATM 127 C C5 . DM1 B 2 . ? 11.635 11.466 21.639 1.00 16.58 ? 7 DM1 A C5 1 HETATM 128 C C6 . DM1 B 2 . ? 13.036 11.478 21.688 1.00 16.41 ? 7 DM1 A C6 1 HETATM 129 O O6 . DM1 B 2 . ? 13.720 10.317 21.749 1.00 16.17 ? 7 DM1 A O6 1 HETATM 130 C C7 . DM1 B 2 . ? 13.810 12.690 21.683 1.00 16.29 ? 7 DM1 A C7 1 HETATM 131 C C8 . DM1 B 2 . ? 15.224 12.681 21.712 1.00 16.41 ? 7 DM1 A C8 1 HETATM 132 O O8 . DM1 B 2 . ? 15.955 11.516 21.740 1.00 16.10 ? 7 DM1 A O8 1 HETATM 133 C C9 . DM1 B 2 . ? 15.943 13.933 21.711 1.00 16.51 ? 7 DM1 A C9 1 HETATM 134 C C10 . DM1 B 2 . ? 17.451 13.860 21.725 1.00 16.87 ? 7 DM1 A C10 1 HETATM 135 O O10 . DM1 B 2 . ? 17.715 13.237 20.380 1.00 17.22 ? 7 DM1 A O10 1 HETATM 136 C C11 . DM1 B 2 . ? 18.241 15.154 21.992 1.00 16.96 ? 7 DM1 A C11 1 HETATM 137 C C12 . DM1 B 2 . ? 17.501 16.303 21.143 1.00 17.02 ? 7 DM1 A C12 1 HETATM 138 O O12 . DM1 B 2 . ? 17.315 16.191 19.695 1.00 16.95 ? 7 DM1 A O12 1 HETATM 139 C C13 . DM1 B 2 . ? 18.211 17.629 21.341 1.00 17.15 ? 7 DM1 A C13 1 HETATM 140 O O13 . DM1 B 2 . ? 17.926 18.337 22.447 1.00 17.51 ? 7 DM1 A O13 1 HETATM 141 C C14 . DM1 B 2 . ? 19.248 18.096 20.342 1.00 17.33 ? 7 DM1 A C14 1 HETATM 142 C C15 . DM1 B 2 . ? 16.032 16.453 21.738 1.00 16.75 ? 7 DM1 A C15 1 HETATM 143 C C16 . DM1 B 2 . ? 15.260 15.175 21.701 1.00 16.54 ? 7 DM1 A C16 1 HETATM 144 C C17 . DM1 B 2 . ? 13.828 15.178 21.665 1.00 16.36 ? 7 DM1 A C17 1 HETATM 145 O O17 . DM1 B 2 . ? 13.189 16.392 21.652 1.00 16.31 ? 7 DM1 A O17 1 HETATM 146 C C18 . DM1 B 2 . ? 13.095 13.951 21.648 1.00 16.33 ? 7 DM1 A C18 1 HETATM 147 C C19 . DM1 B 2 . ? 11.647 13.946 21.600 1.00 16.42 ? 7 DM1 A C19 1 HETATM 148 O O19 . DM1 B 2 . ? 11.021 15.103 21.570 1.00 16.33 ? 7 DM1 A O19 1 HETATM 149 C C20 . DM1 B 2 . ? 10.947 12.710 21.587 1.00 16.55 ? 7 DM1 A C20 1 HETATM 150 C C21 . DM1 B 2 . ? 10.927 7.702 21.701 1.00 17.19 ? 7 DM1 A C21 1 HETATM 151 C "C1'" . DM1 B 2 . ? 18.792 12.315 20.171 1.00 17.73 ? 7 DM1 A "C1'" 1 HETATM 152 C "C2'" . DM1 B 2 . ? 18.322 11.148 19.190 1.00 17.90 ? 7 DM1 A "C2'" 1 HETATM 153 C "C3'" . DM1 B 2 . ? 18.074 11.809 17.771 1.00 18.15 ? 7 DM1 A "C3'" 1 HETATM 154 N "N3'" . DM1 B 2 . ? 17.633 10.706 16.820 1.00 18.14 ? 7 DM1 A "N3'" 1 HETATM 155 C "C4'" . DM1 B 2 . ? 19.333 12.542 17.243 1.00 18.19 ? 7 DM1 A "C4'" 1 HETATM 156 O "O4'" . DM1 B 2 . ? 20.359 11.453 17.086 1.00 18.51 ? 7 DM1 A "O4'" 1 HETATM 157 C "C5'" . DM1 B 2 . ? 19.750 13.665 18.259 1.00 18.27 ? 7 DM1 A "C5'" 1 HETATM 158 O "O5'" . DM1 B 2 . ? 19.976 13.063 19.656 1.00 18.07 ? 7 DM1 A "O5'" 1 HETATM 159 C "C6'" . DM1 B 2 . ? 21.030 14.436 17.873 1.00 18.42 ? 7 DM1 A "C6'" 1 HETATM 160 O O . HOH C 3 . ? 16.141 18.819 24.937 1.00 23.03 ? 101 HOH A O 1 HETATM 161 O O . HOH C 3 . ? 18.525 11.416 14.009 1.00 22.47 ? 102 HOH A O 1 HETATM 162 O O . HOH C 3 . ? 11.513 22.150 19.435 1.00 36.67 ? 103 HOH A O 1 HETATM 163 O O . HOH C 3 . ? 22.383 18.062 8.530 1.00 39.57 ? 104 HOH A O 1 HETATM 164 O O . HOH C 3 . ? 13.590 18.758 12.099 1.00 29.80 ? 105 HOH A O 1 HETATM 165 O O . HOH C 3 . ? 12.924 19.139 14.955 1.00 33.30 ? 106 HOH A O 1 HETATM 166 O O . HOH C 3 . ? 9.345 21.151 20.448 1.00 45.79 ? 107 HOH A O 1 HETATM 167 O O . HOH C 3 . ? 8.919 24.238 21.214 1.00 34.69 ? 108 HOH A O 1 HETATM 168 O O . HOH C 3 . ? 10.655 25.022 22.880 1.00 38.23 ? 109 HOH A O 1 HETATM 169 O O . HOH C 3 . ? 22.104 11.341 14.956 1.00 42.30 ? 110 HOH A O 1 HETATM 170 O O . HOH C 3 . ? 19.483 8.433 16.394 1.00 29.05 ? 111 HOH A O 1 HETATM 171 O O . HOH C 3 . ? 18.704 16.797 25.338 1.00 36.28 ? 112 HOH A O 1 HETATM 172 O O . HOH C 3 . ? 13.371 8.251 23.739 1.00 25.91 ? 113 HOH A O 1 HETATM 173 O O . HOH C 3 . ? 11.144 6.769 25.526 1.00 50.73 ? 114 HOH A O 1 HETATM 174 O O . HOH C 3 . ? 22.118 13.533 3.303 1.00 41.47 ? 115 HOH A O 1 HETATM 175 O O . HOH C 3 . ? 9.342 18.498 17.018 1.00 53.28 ? 116 HOH A O 1 HETATM 176 O O . HOH C 3 . ? 14.999 21.100 13.080 1.00 44.64 ? 117 HOH A O 1 HETATM 177 O O . HOH C 3 . ? 22.572 15.815 7.499 1.00 27.15 ? 118 HOH A O 1 HETATM 178 O O . HOH C 3 . ? 20.681 18.526 10.278 1.00 32.63 ? 119 HOH A O 1 HETATM 179 O O . HOH C 3 . ? 19.815 21.518 13.107 1.00 33.16 ? 120 HOH A O 1 HETATM 180 O O . HOH C 3 . ? 17.488 21.361 13.925 1.00 37.53 ? 121 HOH A O 1 HETATM 181 O O . HOH C 3 . ? 17.307 20.038 8.497 1.00 34.67 ? 122 HOH A O 1 HETATM 182 O O . HOH C 3 . ? 9.075 17.265 20.637 1.00 43.31 ? 123 HOH A O 1 HETATM 183 O O . HOH C 3 . ? 26.104 15.926 12.612 1.00 58.00 ? 124 HOH A O 1 HETATM 184 O O . HOH C 3 . ? 19.455 22.147 20.675 1.00 40.58 ? 125 HOH A O 1 HETATM 185 O O . HOH C 3 . ? 23.360 15.390 4.766 1.00 45.33 ? 127 HOH A O 1 HETATM 186 O O . HOH C 3 . ? 23.585 17.920 3.498 1.00 45.54 ? 128 HOH A O 1 HETATM 187 O O . HOH C 3 . ? 23.190 7.836 9.463 1.00 46.92 ? 129 HOH A O 1 HETATM 188 O O . HOH C 3 . ? 24.002 8.479 6.908 1.00 51.16 ? 130 HOH A O 1 HETATM 189 O O . HOH C 3 . ? 18.228 16.942 1.104 1.00 34.29 ? 131 HOH A O 1 HETATM 190 O O . HOH C 3 . ? 17.623 25.131 18.910 1.00 41.13 ? 132 HOH A O 1 HETATM 191 O O . HOH C 3 . ? 14.842 21.387 10.533 1.00 54.13 ? 133 HOH A O 1 HETATM 192 O O . HOH C 3 . ? 25.927 16.140 9.859 1.00 52.77 ? 134 HOH A O 1 HETATM 193 O O . HOH C 3 . ? 21.896 13.582 21.773 1.00 47.50 ? 135 HOH A O 1 HETATM 194 O O . HOH C 3 . ? 22.072 7.532 16.510 1.00 99.79 ? 136 HOH A O 1 HETATM 195 O O . HOH C 3 . ? 9.186 15.942 16.360 1.00 38.35 ? 137 HOH A O 1 HETATM 196 O O . HOH C 3 . ? 7.507 18.422 23.236 1.00 42.72 ? 138 HOH A O 1 HETATM 197 O O . HOH C 3 . ? 15.282 6.326 2.325 1.00 41.91 ? 139 HOH A O 1 HETATM 198 O O . HOH C 3 . ? 19.604 14.086 25.031 1.00 29.76 ? 140 HOH A O 1 HETATM 199 O O . HOH C 3 . ? 22.082 10.511 19.666 1.00 36.36 ? 141 HOH A O 1 #
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