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STRUCTURAL BIOLOGY
COMMUNICATIONS
Volume 65
|
Part 1
|
January 2009
|
Pages 8–13
https://doi.org/10.1107/S1744309108037706
Open
access
ISSN: 2053-230X
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STRUCTURAL BIOLOGY
COMMUNICATIONS
Volume 65
|
Part 1
|
January 2009
|
Pages 8–13
https://doi.org/10.1107/S1744309108037706
Open
access
ISSN: 2053-230X
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data_3E9W # _entry.id 3E9W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3E9W pdb_00003e9w 10.2210/pdb3e9w/pdb NDB ZD0025 ? ? RCSB RCSB049058 ? ? WWPDB D_1000049058 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 4 'Structure model' 1 3 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3E9W _pdbx_database_status.recvd_initial_deposition_date 2008-08-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Venkadesh, S.' 1 ? 'Mandal, P.K.' 2 ? 'Gautham, N.' 3 ? # _citation.id primary _citation.title 'The structure of d(CACACG).d(CGTGTG).' _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 65 _citation.page_first 8 _citation.page_last 13 _citation.year 2009 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19153446 _citation.pdbx_database_id_DOI 10.1107/S1744309108037706 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Venkadesh, S.' 1 ? primary 'Mandal, P.K.' 2 ? primary 'Gautham, N.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*AP*CP*AP*CP*G)-3'" 1778.207 1 ? ? ? ? 2 polymer syn "5'-D(*CP*GP*TP*GP*TP*G)-3'" 1840.227 1 ? ? ? ? 3 water nat water 18.015 20 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DA)(DC)(DA)(DC)(DG)' CACACG A ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DT)(DG)(DT)(DG)' CGTGTG B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DA n 1 3 DC n 1 4 DA n 1 5 DC n 1 6 DG n 2 1 DC n 2 2 DG n 2 3 DT n 2 4 DG n 2 5 DT n 2 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DA 2 2 2 DA A A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n B 2 1 DC 1 7 7 DC C B . n B 2 2 DG 2 8 8 DG G B . n B 2 3 DT 3 9 9 DT T B . n B 2 4 DG 4 10 10 DG G B . n B 2 5 DT 5 11 11 DT T B . n B 2 6 DG 6 12 12 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 7 1 HOH HOH A . C 3 HOH 2 8 4 HOH HOH A . C 3 HOH 3 10 8 HOH HOH A . C 3 HOH 4 13 12 HOH HOH A . C 3 HOH 5 15 15 HOH HOH A . C 3 HOH 6 16 17 HOH HOH A . C 3 HOH 7 17 19 HOH HOH A . C 3 HOH 8 18 13 HOH HOH A . D 3 HOH 1 13 7 HOH HOH B . D 3 HOH 2 14 9 HOH HOH B . D 3 HOH 3 15 10 HOH HOH B . D 3 HOH 4 16 14 HOH HOH B . D 3 HOH 5 17 2 HOH HOH B . D 3 HOH 6 18 3 HOH HOH B . D 3 HOH 7 19 5 HOH HOH B . D 3 HOH 8 20 6 HOH HOH B . D 3 HOH 9 21 11 HOH HOH B . D 3 HOH 10 22 16 HOH HOH B . D 3 HOH 11 23 18 HOH HOH B . D 3 HOH 12 24 20 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language MAR345dtb 'data collection' . ? 1 ? ? ? ? AMoRE phasing . ? 2 ? ? ? ? REFMAC refinement 5.2.0019 ? 3 ? ? ? ? AUTOMAR 'data reduction' . ? 4 ? ? ? ? SCALEPACK 'data scaling' . ? 5 ? ? ? ? # _cell.entry_id 3E9W _cell.length_a 17.854 _cell.length_b 43.440 _cell.length_c 17.847 _cell.angle_alpha 90.00 _cell.angle_beta 119.87 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3E9W _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3E9W _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.67 _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 300 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.99 _exptl_crystal_grow.pdbx_details 'cobalt(III)hexammine chloride,spermine and 50% MPD, pH 6.99, VAPOR DIFFUSION, HANGING DROP, temperature 300K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'cobalt(III)hexammine chloride' ? ? ? 1 2 1 spermine ? ? ? 1 3 1 MPD ? ? ? 1 4 2 'cobalt(III)hexammine chloride' ? ? ? 1 5 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 300 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2006-10-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator MIRRORS _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU300' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3E9W _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 15.0 _reflns.d_resolution_high 2.05 _reflns.number_obs 1384 _reflns.number_all 1384 _reflns.percent_possible_obs 92.1 _reflns.pdbx_Rmerge_I_obs 0.027 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.73 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.d_res_high 2.05 _reflns_shell.d_res_low 2.13 _reflns_shell.percent_possible_all 94.5 _reflns_shell.Rmerge_I_obs 0.1984 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_redundancy 2.74 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 120 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.entry_id 3E9W _refine.ls_number_reflns_obs 1314 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 14.58 _refine.ls_d_res_high 2.05 _refine.ls_percent_reflns_obs 92.80 _refine.ls_R_factor_obs 0.23663 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23507 _refine.ls_R_factor_R_free 0.26375 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 66 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.952 _refine.B_iso_mean 34.975 _refine.aniso_B[1][1] -0.15 _refine.aniso_B[2][2] 0.05 _refine.aniso_B[3][3] 0.13 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.03 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'Fiber model of Z-DNA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Overall _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.351 _refine.pdbx_overall_ESU_R_Free 0.251 _refine.overall_SU_ML 0.225 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 240 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 20 _refine_hist.number_atoms_total 260 _refine_hist.d_res_high 2.05 _refine_hist.d_res_low 14.58 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.042 0.021 ? 268 'X-RAY DIFFRACTION' ? r_angle_refined_deg 6.407 3.000 ? 410 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.024 0.020 ? 126 'X-RAY DIFFRACTION' ? r_nbd_refined 0.296 0.200 ? 136 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.424 0.200 ? 139 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.345 0.200 ? 11 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.398 0.200 ? 29 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.582 0.200 ? 5 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.05 _refine_ls_shell.d_res_low 2.107 _refine_ls_shell.number_reflns_R_work 80 _refine_ls_shell.R_factor_R_work 0.527 _refine_ls_shell.percent_reflns_obs 96.47 _refine_ls_shell.R_factor_R_free 0.706 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 2 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_obs ? # _database_PDB_matrix.entry_id 3E9W _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3E9W _struct.title 'X-Ray Crystal Structure of the hexamer DCACACG:Crystal grown in the presence of cobalt(III)hexammine Chloride.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3E9W _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Z DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3E9W 3E9W 1 1 CACACG ? 2 PDB 3E9W 3E9W 2 7 CGTGTG ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3E9W A 1 ? 6 ? 3E9W 1 ? 6 ? 1 6 2 2 3E9W B 1 ? 6 ? 3E9W 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 660 ? 1 MORE -7 ? 1 'SSA (A^2)' 2350 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 2 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 2 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C1'" A DC 1 ? ? N1 A DC 1 ? ? 1.350 1.468 -0.118 0.014 N 2 1 C4 A DC 1 ? ? C5 A DC 1 ? ? 1.363 1.425 -0.062 0.008 N 3 1 "C5'" A DA 2 ? ? "C4'" A DA 2 ? ? 1.554 1.512 0.042 0.007 N 4 1 "O4'" A DA 2 ? ? "C4'" A DA 2 ? ? 1.385 1.446 -0.061 0.010 N 5 1 "O3'" A DA 2 ? ? "C3'" A DA 2 ? ? 1.323 1.419 -0.096 0.006 N 6 1 C5 A DA 2 ? ? C6 A DA 2 ? ? 1.337 1.406 -0.069 0.009 N 7 1 C5 A DA 2 ? ? N7 A DA 2 ? ? 1.329 1.388 -0.059 0.006 N 8 1 "O3'" A DC 3 ? ? "C3'" A DC 3 ? ? 1.316 1.419 -0.103 0.006 N 9 1 "C1'" A DC 3 ? ? N1 A DC 3 ? ? 1.383 1.468 -0.085 0.014 N 10 1 N1 A DC 3 ? ? C6 A DC 3 ? ? 1.293 1.367 -0.074 0.006 N 11 1 C2 A DC 3 ? ? N3 A DC 3 ? ? 1.283 1.353 -0.070 0.008 N 12 1 N3 A DC 3 ? ? C4 A DC 3 ? ? 1.279 1.335 -0.056 0.007 N 13 1 P A DA 4 ? ? "O5'" A DA 4 ? ? 1.528 1.593 -0.065 0.010 N 14 1 "O3'" A DA 4 ? ? "C3'" A DA 4 ? ? 1.548 1.435 0.113 0.013 N 15 1 N3 A DA 4 ? ? C4 A DA 4 ? ? 1.390 1.344 0.046 0.006 N 16 1 N9 A DA 4 ? ? C4 A DA 4 ? ? 1.410 1.374 0.036 0.006 N 17 1 "O3'" A DA 4 ? ? P A DC 5 ? ? 1.710 1.607 0.103 0.012 Y 18 1 N1 A DC 5 ? ? C2 A DC 5 ? ? 1.326 1.397 -0.071 0.010 N 19 1 "C5'" B DC 7 ? ? "C4'" B DC 7 ? ? 1.572 1.512 0.060 0.007 N 20 1 "C1'" B DC 7 ? ? N1 B DC 7 ? ? 1.356 1.468 -0.112 0.014 N 21 1 "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? 1.437 1.521 -0.084 0.010 N 22 1 "O3'" B DG 8 ? ? "C3'" B DG 8 ? ? 1.357 1.419 -0.062 0.006 N 23 1 C2 B DT 9 ? ? O2 B DT 9 ? ? 1.168 1.220 -0.052 0.008 N 24 1 C5 B DT 9 ? ? C7 B DT 9 ? ? 1.535 1.496 0.039 0.006 N 25 1 C5 B DG 10 ? ? C6 B DG 10 ? ? 1.518 1.419 0.099 0.010 N 26 1 C5 B DG 10 ? ? N7 B DG 10 ? ? 1.447 1.388 0.059 0.006 N 27 1 N9 B DG 10 ? ? C4 B DG 10 ? ? 1.424 1.375 0.049 0.008 N 28 1 C6 B DG 10 ? ? O6 B DG 10 ? ? 1.320 1.237 0.083 0.009 N 29 1 P B DT 11 ? ? "O5'" B DT 11 ? ? 1.657 1.593 0.064 0.010 N 30 1 "O3'" B DT 11 ? ? "C3'" B DT 11 ? ? 1.365 1.419 -0.054 0.006 N 31 1 "C1'" B DT 11 ? ? N1 B DT 11 ? ? 1.369 1.468 -0.099 0.014 N 32 1 N1 B DT 11 ? ? C2 B DT 11 ? ? 1.288 1.376 -0.088 0.008 N 33 1 P B DG 12 ? ? "O5'" B DG 12 ? ? 1.679 1.593 0.086 0.010 N 34 1 "O5'" B DG 12 ? ? "C5'" B DG 12 ? ? 1.540 1.440 0.100 0.016 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DC 1 ? ? "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 103.40 109.40 -6.00 0.80 N 2 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 99.67 104.50 -4.83 0.40 N 3 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 95.38 102.40 -7.02 0.80 N 4 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 101.99 108.00 -6.01 0.70 N 5 1 C6 A DC 1 ? ? N1 A DC 1 ? ? C2 A DC 1 ? ? 123.53 120.30 3.23 0.40 N 6 1 N1 A DC 1 ? ? C2 A DC 1 ? ? N3 A DC 1 ? ? 111.08 119.20 -8.12 0.70 N 7 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 125.66 119.90 5.76 0.50 N 8 1 C4 A DC 1 ? ? C5 A DC 1 ? ? C6 A DC 1 ? ? 112.58 117.40 -4.82 0.50 N 9 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 126.27 118.90 7.37 0.60 N 10 1 OP1 A DA 2 ? ? P A DA 2 ? ? OP2 A DA 2 ? ? 109.53 119.60 -10.07 1.50 N 11 1 "O5'" A DA 2 ? ? P A DA 2 ? ? OP2 A DA 2 ? ? 124.00 110.70 13.30 1.20 N 12 1 P A DA 2 ? ? "O5'" A DA 2 ? ? "C5'" A DA 2 ? ? 131.03 120.90 10.13 1.60 N 13 1 "O4'" A DA 2 ? ? "C4'" A DA 2 ? ? "C3'" A DA 2 ? ? 92.22 104.50 -12.28 0.40 N 14 1 "C5'" A DA 2 ? ? "C4'" A DA 2 ? ? "C3'" A DA 2 ? ? 124.34 115.70 8.64 1.20 N 15 1 "C4'" A DA 2 ? ? "C3'" A DA 2 ? ? "C2'" A DA 2 ? ? 110.02 103.10 6.92 0.90 N 16 1 C4 A DA 2 ? ? C5 A DA 2 ? ? C6 A DA 2 ? ? 120.15 117.00 3.15 0.50 N 17 1 C6 A DA 2 ? ? C5 A DA 2 ? ? N7 A DA 2 ? ? 126.69 132.30 -5.61 0.70 N 18 1 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 124.41 118.60 5.81 0.60 N 19 1 "O3'" A DA 2 ? ? P A DC 3 ? ? OP1 A DC 3 ? ? 118.98 110.50 8.48 1.10 Y 20 1 "O5'" A DC 3 ? ? P A DC 3 ? ? OP1 A DC 3 ? ? 119.83 110.70 9.13 1.20 N 21 1 "C1'" A DC 3 ? ? "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? 100.93 110.10 -9.17 1.00 N 22 1 "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 95.64 102.40 -6.76 0.80 N 23 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 91.43 108.00 -16.57 0.70 N 24 1 N1 A DC 3 ? ? C2 A DC 3 ? ? N3 A DC 3 ? ? 125.12 119.20 5.92 0.70 N 25 1 C2 A DC 3 ? ? N3 A DC 3 ? ? C4 A DC 3 ? ? 116.23 119.90 -3.67 0.50 N 26 1 C4 A DC 3 ? ? C5 A DC 3 ? ? C6 A DC 3 ? ? 124.01 117.40 6.61 0.50 N 27 1 C5 A DC 3 ? ? C6 A DC 3 ? ? N1 A DC 3 ? ? 113.26 121.00 -7.74 0.50 N 28 1 C5 A DC 3 ? ? C4 A DC 3 ? ? N4 A DC 3 ? ? 124.46 120.20 4.26 0.70 N 29 1 "O3'" A DC 3 ? ? P A DA 4 ? ? OP1 A DA 4 ? ? 121.29 110.50 10.79 1.10 Y 30 1 P A DA 4 ? ? "O5'" A DA 4 ? ? "C5'" A DA 4 ? ? 105.73 120.90 -15.17 1.60 N 31 1 "O4'" A DA 4 ? ? "C4'" A DA 4 ? ? "C3'" A DA 4 ? ? 99.10 104.50 -5.40 0.40 N 32 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 96.38 108.00 -11.62 0.70 N 33 1 N1 A DA 4 ? ? C2 A DA 4 ? ? N3 A DA 4 ? ? 122.09 129.30 -7.21 0.50 N 34 1 C2 A DA 4 ? ? N3 A DA 4 ? ? C4 A DA 4 ? ? 117.43 110.60 6.83 0.50 N 35 1 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.50 117.00 -3.50 0.50 N 36 1 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 123.40 117.70 5.70 0.50 N 37 1 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 114.03 118.60 -4.57 0.60 N 38 1 OP1 A DC 5 ? ? P A DC 5 ? ? OP2 A DC 5 ? ? 109.10 119.60 -10.50 1.50 N 39 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 97.00 109.40 -12.40 0.80 N 40 1 "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? "O4'" A DC 5 ? ? 123.19 109.80 13.39 1.10 N 41 1 "C1'" A DC 5 ? ? "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? 103.77 110.10 -6.33 1.00 N 42 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 110.74 106.80 3.94 0.50 N 43 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 101.08 108.00 -6.92 0.70 N 44 1 C2 A DC 5 ? ? N3 A DC 5 ? ? C4 A DC 5 ? ? 124.39 119.90 4.49 0.50 N 45 1 C4 A DC 5 ? ? C5 A DC 5 ? ? C6 A DC 5 ? ? 113.56 117.40 -3.84 0.50 N 46 1 N3 A DC 5 ? ? C4 A DC 5 ? ? N4 A DC 5 ? ? 112.53 118.00 -5.47 0.70 N 47 1 C5 A DC 5 ? ? C4 A DC 5 ? ? N4 A DC 5 ? ? 126.57 120.20 6.37 0.70 N 48 1 C2 A DC 5 ? ? N1 A DC 5 ? ? "C1'" A DC 5 ? ? 111.59 118.80 -7.21 1.10 N 49 1 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DG 6 ? ? 138.89 119.70 19.19 1.20 Y 50 1 "O3'" A DC 5 ? ? P A DG 6 ? ? "O5'" A DG 6 ? ? 88.62 104.00 -15.38 1.90 Y 51 1 "O3'" A DC 5 ? ? P A DG 6 ? ? OP1 A DG 6 ? ? 120.47 110.50 9.97 1.10 Y 52 1 "O5'" A DG 6 ? ? P A DG 6 ? ? OP1 A DG 6 ? ? 121.15 110.70 10.45 1.20 N 53 1 P A DG 6 ? ? "O5'" A DG 6 ? ? "C5'" A DG 6 ? ? 88.24 120.90 -32.66 1.60 N 54 1 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 99.75 104.50 -4.75 0.40 N 55 1 "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? "O4'" A DG 6 ? ? 90.09 109.30 -19.21 1.90 N 56 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 98.46 108.00 -9.54 0.70 N 57 1 C6 A DG 6 ? ? N1 A DG 6 ? ? C2 A DG 6 ? ? 128.76 125.10 3.66 0.60 N 58 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 107.60 111.50 -3.90 0.50 N 59 1 C6 A DG 6 ? ? C5 A DG 6 ? ? N7 A DG 6 ? ? 126.34 130.40 -4.06 0.60 N 60 1 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 124.33 119.90 4.43 0.60 N 61 1 "O4'" B DC 7 ? ? "C4'" B DC 7 ? ? "C3'" B DC 7 ? ? 98.63 104.50 -5.87 0.40 N 62 1 "C3'" B DC 7 ? ? "C2'" B DC 7 ? ? "C1'" B DC 7 ? ? 95.88 102.40 -6.52 0.80 N 63 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 95.69 108.00 -12.31 0.70 N 64 1 C6 B DC 7 ? ? N1 B DC 7 ? ? C2 B DC 7 ? ? 124.15 120.30 3.85 0.40 N 65 1 N1 B DC 7 ? ? C2 B DC 7 ? ? N3 B DC 7 ? ? 112.22 119.20 -6.98 0.70 N 66 1 C2 B DC 7 ? ? N3 B DC 7 ? ? C4 B DC 7 ? ? 124.97 119.90 5.07 0.50 N 67 1 C4 B DC 7 ? ? C5 B DC 7 ? ? C6 B DC 7 ? ? 114.29 117.40 -3.11 0.50 N 68 1 N1 B DC 7 ? ? C2 B DC 7 ? ? O2 B DC 7 ? ? 125.18 118.90 6.28 0.60 N 69 1 "C3'" B DC 7 ? ? "O3'" B DC 7 ? ? P B DG 8 ? ? 134.91 119.70 15.21 1.20 Y 70 1 "O5'" B DG 8 ? ? "C5'" B DG 8 ? ? "C4'" B DG 8 ? ? 95.04 109.40 -14.36 0.80 N 71 1 "O4'" B DG 8 ? ? "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? 99.64 104.50 -4.86 0.40 N 72 1 "C1'" B DG 8 ? ? "O4'" B DG 8 ? ? "C4'" B DG 8 ? ? 96.76 110.10 -13.34 1.00 N 73 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 98.17 108.00 -9.83 0.70 N 74 1 N1 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 115.29 119.90 -4.61 0.60 N 75 1 C5 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 134.90 128.60 6.30 0.60 N 76 1 OP1 B DT 9 ? ? P B DT 9 ? ? OP2 B DT 9 ? ? 129.76 119.60 10.16 1.50 N 77 1 "O5'" B DT 9 ? ? P B DT 9 ? ? OP2 B DT 9 ? ? 93.90 105.70 -11.80 0.90 N 78 1 "O5'" B DT 9 ? ? "C5'" B DT 9 ? ? "C4'" B DT 9 ? ? 104.48 109.40 -4.92 0.80 N 79 1 P B DT 9 ? ? "O5'" B DT 9 ? ? "C5'" B DT 9 ? ? 108.54 120.90 -12.36 1.60 N 80 1 "O4'" B DT 9 ? ? "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? 110.33 106.00 4.33 0.60 N 81 1 "C5'" B DT 9 ? ? "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? 103.07 114.10 -11.03 1.80 N 82 1 "C5'" B DT 9 ? ? "C4'" B DT 9 ? ? "O4'" B DT 9 ? ? 116.61 109.80 6.81 1.10 N 83 1 "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? "C2'" B DT 9 ? ? 89.14 102.20 -13.06 0.70 N 84 1 N1 B DT 9 ? ? C2 B DT 9 ? ? N3 B DT 9 ? ? 119.86 114.60 5.26 0.60 N 85 1 N3 B DT 9 ? ? C2 B DT 9 ? ? O2 B DT 9 ? ? 118.55 122.30 -3.75 0.60 N 86 1 N3 B DT 9 ? ? C4 B DT 9 ? ? O4 B DT 9 ? ? 116.17 119.90 -3.73 0.60 N 87 1 C4 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 122.72 119.00 3.72 0.60 N 88 1 "C3'" B DT 9 ? ? "O3'" B DT 9 ? ? P B DG 10 ? ? 134.41 119.70 14.71 1.20 Y 89 1 "O5'" B DG 10 ? ? "C5'" B DG 10 ? ? "C4'" B DG 10 ? ? 96.24 109.40 -13.16 0.80 N 90 1 C2 B DG 10 ? ? N3 B DG 10 ? ? C4 B DG 10 ? ? 115.19 111.90 3.29 0.50 N 91 1 N3 B DG 10 ? ? C4 B DG 10 ? ? C5 B DG 10 ? ? 124.50 128.60 -4.10 0.50 N 92 1 C4 B DG 10 ? ? C5 B DG 10 ? ? N7 B DG 10 ? ? 103.85 110.80 -6.95 0.40 N 93 1 C5 B DG 10 ? ? N7 B DG 10 ? ? C8 B DG 10 ? ? 107.79 104.30 3.49 0.50 N 94 1 C8 B DG 10 ? ? N9 B DG 10 ? ? C4 B DG 10 ? ? 101.97 106.40 -4.43 0.40 N 95 1 N9 B DG 10 ? ? C4 B DG 10 ? ? C5 B DG 10 ? ? 112.09 105.40 6.69 0.40 N 96 1 C6 B DG 10 ? ? C5 B DG 10 ? ? N7 B DG 10 ? ? 137.32 130.40 6.92 0.60 N 97 1 N3 B DG 10 ? ? C2 B DG 10 ? ? N2 B DG 10 ? ? 112.33 119.90 -7.57 0.70 N 98 1 N1 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 112.99 119.90 -6.91 0.60 N 99 1 C5 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 136.17 128.60 7.57 0.60 N 100 1 "O3'" B DG 10 ? ? P B DT 11 ? ? "O5'" B DT 11 ? ? 118.92 104.00 14.92 1.90 Y 101 1 "O3'" B DG 10 ? ? P B DT 11 ? ? OP2 B DT 11 ? ? 89.28 105.20 -15.92 2.20 Y 102 1 OP1 B DT 11 ? ? P B DT 11 ? ? OP2 B DT 11 ? ? 129.69 119.60 10.09 1.50 N 103 1 P B DT 11 ? ? "O5'" B DT 11 ? ? "C5'" B DT 11 ? ? 131.50 120.90 10.60 1.60 N 104 1 "C3'" B DT 11 ? ? "C2'" B DT 11 ? ? "C1'" B DT 11 ? ? 97.43 102.40 -4.97 0.80 N 105 1 "O4'" B DT 11 ? ? "C1'" B DT 11 ? ? "C2'" B DT 11 ? ? 112.95 106.80 6.15 0.50 N 106 1 "O4'" B DT 11 ? ? "C1'" B DT 11 ? ? N1 B DT 11 ? ? 102.13 108.00 -5.87 0.70 N 107 1 C6 B DT 11 ? ? N1 B DT 11 ? ? C2 B DT 11 ? ? 126.56 121.30 5.26 0.50 N 108 1 C5 B DT 11 ? ? C6 B DT 11 ? ? N1 B DT 11 ? ? 119.91 123.70 -3.79 0.60 N 109 1 N1 B DT 11 ? ? C2 B DT 11 ? ? O2 B DT 11 ? ? 115.23 123.10 -7.87 0.80 N 110 1 N3 B DT 11 ? ? C2 B DT 11 ? ? O2 B DT 11 ? ? 128.87 122.30 6.57 0.60 N 111 1 N3 B DT 11 ? ? C4 B DT 11 ? ? O4 B DT 11 ? ? 110.65 119.90 -9.25 0.60 N 112 1 C5 B DT 11 ? ? C4 B DT 11 ? ? O4 B DT 11 ? ? 133.44 124.90 8.54 0.70 N 113 1 C4 B DT 11 ? ? C5 B DT 11 ? ? C7 B DT 11 ? ? 128.13 119.00 9.13 0.60 N 114 1 C6 B DT 11 ? ? C5 B DT 11 ? ? C7 B DT 11 ? ? 115.09 122.90 -7.81 0.60 N 115 1 C2 B DT 11 ? ? N1 B DT 11 ? ? "C1'" B DT 11 ? ? 105.73 118.20 -12.47 1.60 N 116 1 "O5'" B DG 12 ? ? P B DG 12 ? ? OP2 B DG 12 ? ? 121.16 110.70 10.46 1.20 N 117 1 P B DG 12 ? ? "O5'" B DG 12 ? ? "C5'" B DG 12 ? ? 130.70 120.90 9.80 1.60 N 118 1 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? "C3'" B DG 12 ? ? 98.19 104.50 -6.31 0.40 N 119 1 "C1'" B DG 12 ? ? "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? 117.48 110.30 7.18 0.70 N 120 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 117.50 108.30 9.20 0.30 N 121 1 N1 B DG 12 ? ? C2 B DG 12 ? ? N3 B DG 12 ? ? 120.26 123.90 -3.64 0.60 N 122 1 C2 B DG 12 ? ? N3 B DG 12 ? ? C4 B DG 12 ? ? 117.37 111.90 5.47 0.50 N 123 1 N7 B DG 12 ? ? C8 B DG 12 ? ? N9 B DG 12 ? ? 116.97 113.10 3.87 0.50 N 124 1 C8 B DG 12 ? ? N9 B DG 12 ? ? C4 B DG 12 ? ? 100.41 106.40 -5.99 0.40 N 125 1 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 110.05 105.40 4.65 0.40 N 126 1 N1 B DG 12 ? ? C2 B DG 12 ? ? N2 B DG 12 ? ? 123.47 116.20 7.27 0.90 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 3E9W _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 6 1_555 -0.631 0.132 0.252 1.144 8.186 -8.851 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DA 2 1_555 B DT 5 1_555 0.287 -0.648 0.345 0.612 5.396 7.925 2 A_DA2:DT11_B A 2 ? B 11 ? 20 1 1 A DC 3 1_555 B DG 4 1_555 -0.374 -0.296 0.534 -2.540 8.812 3.162 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DA 4 1_555 B DT 3 1_555 0.736 0.030 0.978 21.770 -0.100 7.664 4 A_DA4:DT9_B A 4 ? B 9 ? 20 1 1 A DC 5 1_555 B DG 2 1_555 0.032 -0.201 0.253 3.371 -2.232 5.128 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A DG 6 1_555 B DC 1 1_555 0.414 0.187 0.204 8.351 9.007 0.695 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 6 1_555 A DA 2 1_555 B DT 5 1_555 0.388 5.123 3.806 -2.639 5.671 -9.865 -31.154 -0.875 0.823 -29.408 -13.683 -11.677 1 AA_DC1DA2:DT11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DA 2 1_555 B DT 5 1_555 A DC 3 1_555 B DG 4 1_555 0.181 -1.373 3.993 -0.861 4.341 -46.506 1.283 0.140 4.101 -5.484 -1.087 -46.704 2 AA_DA2DC3:DG10DT11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 4 1_555 A DA 4 1_555 B DT 3 1_555 -0.106 5.156 3.051 -3.695 2.393 -16.383 -18.751 -2.321 2.202 -8.206 -12.673 -16.960 3 AA_DC3DA4:DT9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DA 4 1_555 B DT 3 1_555 A DC 5 1_555 B DG 2 1_555 -0.232 -1.708 4.116 5.649 3.778 -40.751 1.900 0.453 4.245 -5.380 8.044 -41.290 4 AA_DA4DC5:DG8DT9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 -0.154 5.177 3.714 3.847 4.789 -11.357 -27.508 2.908 1.400 -22.198 17.831 -12.907 5 AA_DC5DG6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'coordinates of d(CGCGCG)' # _atom_sites.entry_id 3E9W _atom_sites.fract_transf_matrix[1][1] 0.056010 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.032163 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023020 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.064613 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 0.386 10.931 6.795 1.00 35.52 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? -0.090 9.684 6.636 1.00 29.29 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 0.796 9.103 5.510 1.00 38.73 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 0.050 8.350 4.497 1.00 43.07 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 1.635 10.010 4.592 1.00 51.12 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 2.676 9.166 3.922 1.00 44.30 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 0.543 10.491 3.616 1.00 42.01 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 0.023 9.097 3.285 1.00 30.49 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? -1.302 9.191 3.043 1.00 26.86 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? -1.776 9.166 1.754 1.00 20.90 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? -1.087 9.126 0.715 1.00 25.44 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? -3.102 9.241 1.731 1.00 25.64 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? -3.886 9.342 2.789 1.00 12.52 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? -5.175 9.406 2.496 1.00 26.68 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? -3.422 9.314 4.070 1.00 27.46 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? -2.101 9.253 4.131 1.00 27.95 ? 1 DC A C6 1 ATOM 17 P P . DA A 1 2 ? 4.262 9.416 3.926 1.00 39.16 ? 2 DA A P 1 ATOM 18 O OP1 . DA A 1 2 ? 4.624 9.937 5.261 1.00 44.78 ? 2 DA A OP1 1 ATOM 19 O OP2 . DA A 1 2 ? 4.382 10.495 2.926 1.00 38.64 ? 2 DA A OP2 1 ATOM 20 O "O5'" . DA A 1 2 ? 4.760 7.862 3.672 1.00 49.47 ? 2 DA A "O5'" 1 ATOM 21 C "C5'" . DA A 1 2 ? 5.581 6.936 4.527 1.00 34.53 ? 2 DA A "C5'" 1 ATOM 22 C "C4'" . DA A 1 2 ? 5.044 6.036 5.675 1.00 22.37 ? 2 DA A "C4'" 1 ATOM 23 O "O4'" . DA A 1 2 ? 3.771 6.430 6.053 1.00 22.45 ? 2 DA A "O4'" 1 ATOM 24 C "C3'" . DA A 1 2 ? 4.621 4.632 5.504 1.00 26.30 ? 2 DA A "C3'" 1 ATOM 25 O "O3'" . DA A 1 2 ? 5.729 3.966 5.787 1.00 51.61 ? 2 DA A "O3'" 1 ATOM 26 C "C2'" . DA A 1 2 ? 3.673 4.227 6.640 1.00 31.43 ? 2 DA A "C2'" 1 ATOM 27 C "C1'" . DA A 1 2 ? 3.192 5.603 7.008 1.00 23.33 ? 2 DA A "C1'" 1 ATOM 28 N N9 . DA A 1 2 ? 1.776 5.610 6.770 1.00 29.68 ? 2 DA A N9 1 ATOM 29 C C8 . DA A 1 2 ? 0.868 5.607 7.768 1.00 43.00 ? 2 DA A C8 1 ATOM 30 N N7 . DA A 1 2 ? -0.353 5.568 7.344 1.00 46.98 ? 2 DA A N7 1 ATOM 31 C C5 . DA A 1 2 ? -0.241 5.514 6.021 1.00 32.67 ? 2 DA A C5 1 ATOM 32 C C6 . DA A 1 2 ? -1.241 5.532 5.133 1.00 39.63 ? 2 DA A C6 1 ATOM 33 N N6 . DA A 1 2 ? -2.484 5.570 5.550 1.00 29.12 ? 2 DA A N6 1 ATOM 34 N N1 . DA A 1 2 ? -0.880 5.472 3.860 1.00 35.91 ? 2 DA A N1 1 ATOM 35 C C2 . DA A 1 2 ? 0.438 5.480 3.539 1.00 30.58 ? 2 DA A C2 1 ATOM 36 N N3 . DA A 1 2 ? 1.472 5.579 4.347 1.00 43.63 ? 2 DA A N3 1 ATOM 37 C C4 . DA A 1 2 ? 1.050 5.568 5.597 1.00 29.56 ? 2 DA A C4 1 ATOM 38 P P . DC A 1 3 ? 5.861 2.390 5.405 1.00 56.65 ? 3 DC A P 1 ATOM 39 O OP1 . DC A 1 3 ? 5.229 1.334 6.346 1.00 41.62 ? 3 DC A OP1 1 ATOM 40 O OP2 . DC A 1 3 ? 7.330 2.289 5.215 1.00 64.02 ? 3 DC A OP2 1 ATOM 41 O "O5'" . DC A 1 3 ? 5.365 2.494 3.846 1.00 49.64 ? 3 DC A "O5'" 1 ATOM 42 C "C5'" . DC A 1 3 ? 5.882 1.493 2.936 1.00 35.03 ? 3 DC A "C5'" 1 ATOM 43 C "C4'" . DC A 1 3 ? 4.868 1.387 1.834 1.00 31.00 ? 3 DC A "C4'" 1 ATOM 44 O "O4'" . DC A 1 3 ? 3.638 1.088 2.536 1.00 27.98 ? 3 DC A "O4'" 1 ATOM 45 C "C3'" . DC A 1 3 ? 4.710 2.684 1.089 1.00 26.35 ? 3 DC A "C3'" 1 ATOM 46 O "O3'" . DC A 1 3 ? 4.360 2.353 -0.136 1.00 31.66 ? 3 DC A "O3'" 1 ATOM 47 C "C2'" . DC A 1 3 ? 3.492 3.252 1.783 1.00 22.54 ? 3 DC A "C2'" 1 ATOM 48 C "C1'" . DC A 1 3 ? 2.772 1.940 1.915 1.00 11.98 ? 3 DC A "C1'" 1 ATOM 49 N N1 . DC A 1 3 ? 1.814 1.733 2.891 1.00 18.75 ? 3 DC A N1 1 ATOM 50 C C2 . DC A 1 3 ? 0.501 1.651 2.569 1.00 19.92 ? 3 DC A C2 1 ATOM 51 O O2 . DC A 1 3 ? 0.212 1.778 1.402 1.00 31.78 ? 3 DC A O2 1 ATOM 52 N N3 . DC A 1 3 ? -0.458 1.510 3.410 1.00 26.74 ? 3 DC A N3 1 ATOM 53 C C4 . DC A 1 3 ? -0.124 1.449 4.643 1.00 21.00 ? 3 DC A C4 1 ATOM 54 N N4 . DC A 1 3 ? -1.143 1.362 5.520 1.00 31.53 ? 3 DC A N4 1 ATOM 55 C C5 . DC A 1 3 ? 1.209 1.517 4.998 1.00 29.67 ? 3 DC A C5 1 ATOM 56 C C6 . DC A 1 3 ? 2.216 1.645 4.117 1.00 36.86 ? 3 DC A C6 1 ATOM 57 P P . DA A 1 4 ? 5.419 2.200 -1.241 1.00 42.42 ? 4 DA A P 1 ATOM 58 O OP1 . DA A 1 4 ? 6.763 2.734 -1.079 1.00 37.37 ? 4 DA A OP1 1 ATOM 59 O OP2 . DA A 1 4 ? 4.521 2.671 -2.256 1.00 29.22 ? 4 DA A OP2 1 ATOM 60 O "O5'" . DA A 1 4 ? 5.648 0.711 -1.498 1.00 36.67 ? 4 DA A "O5'" 1 ATOM 61 C "C5'" . DA A 1 4 ? 6.695 0.643 -2.360 1.00 35.93 ? 4 DA A "C5'" 1 ATOM 62 C "C4'" . DA A 1 4 ? 7.335 -0.692 -2.091 1.00 27.82 ? 4 DA A "C4'" 1 ATOM 63 O "O4'" . DA A 1 4 ? 7.293 -0.681 -0.693 1.00 29.53 ? 4 DA A "O4'" 1 ATOM 64 C "C3'" . DA A 1 4 ? 6.591 -1.995 -2.344 1.00 40.51 ? 4 DA A "C3'" 1 ATOM 65 O "O3'" . DA A 1 4 ? 6.529 -2.449 -3.823 1.00 46.18 ? 4 DA A "O3'" 1 ATOM 66 C "C2'" . DA A 1 4 ? 7.275 -2.912 -1.295 1.00 37.09 ? 4 DA A "C2'" 1 ATOM 67 C "C1'" . DA A 1 4 ? 7.747 -1.917 -0.231 1.00 24.84 ? 4 DA A "C1'" 1 ATOM 68 N N9 . DA A 1 4 ? 7.069 -1.870 1.047 1.00 23.12 ? 4 DA A N9 1 ATOM 69 C C8 . DA A 1 4 ? 7.615 -1.902 2.287 1.00 21.90 ? 4 DA A C8 1 ATOM 70 N N7 . DA A 1 4 ? 6.695 -1.854 3.221 1.00 24.46 ? 4 DA A N7 1 ATOM 71 C C5 . DA A 1 4 ? 5.485 -1.762 2.552 1.00 26.07 ? 4 DA A C5 1 ATOM 72 C C6 . DA A 1 4 ? 4.117 -1.637 2.933 1.00 49.36 ? 4 DA A C6 1 ATOM 73 N N6 . DA A 1 4 ? 3.732 -1.572 4.202 1.00 32.10 ? 4 DA A N6 1 ATOM 74 N N1 . DA A 1 4 ? 3.096 -1.535 2.038 1.00 38.14 ? 4 DA A N1 1 ATOM 75 C C2 . DA A 1 4 ? 3.384 -1.559 0.730 1.00 24.21 ? 4 DA A C2 1 ATOM 76 N N3 . DA A 1 4 ? 4.663 -1.634 0.273 1.00 43.32 ? 4 DA A N3 1 ATOM 77 C C4 . DA A 1 4 ? 5.676 -1.733 1.219 1.00 30.65 ? 4 DA A C4 1 ATOM 78 P P . DC A 1 5 ? 5.101 -2.686 -4.733 1.00 55.52 ? 5 DC A P 1 ATOM 79 O OP1 . DC A 1 5 ? 5.261 -2.110 -6.099 1.00 65.20 ? 5 DC A OP1 1 ATOM 80 O OP2 . DC A 1 5 ? 3.837 -2.174 -4.133 1.00 66.47 ? 5 DC A OP2 1 ATOM 81 O "O5'" . DC A 1 5 ? 5.219 -4.319 -4.702 1.00 62.92 ? 5 DC A "O5'" 1 ATOM 82 C "C5'" . DC A 1 5 ? 5.701 -5.254 -3.595 1.00 47.31 ? 5 DC A "C5'" 1 ATOM 83 C "C4'" . DC A 1 5 ? 4.329 -5.914 -3.294 1.00 41.51 ? 5 DC A "C4'" 1 ATOM 84 O "O4'" . DC A 1 5 ? 3.951 -6.421 -1.959 1.00 31.50 ? 5 DC A "O4'" 1 ATOM 85 C "C3'" . DC A 1 5 ? 3.264 -4.878 -3.709 1.00 38.35 ? 5 DC A "C3'" 1 ATOM 86 O "O3'" . DC A 1 5 ? 2.091 -5.395 -4.493 1.00 48.14 ? 5 DC A "O3'" 1 ATOM 87 C "C2'" . DC A 1 5 ? 3.044 -4.233 -2.333 1.00 36.57 ? 5 DC A "C2'" 1 ATOM 88 C "C1'" . DC A 1 5 ? 3.043 -5.428 -1.461 1.00 30.13 ? 5 DC A "C1'" 1 ATOM 89 N N1 . DC A 1 5 ? 3.464 -5.321 -0.134 1.00 24.00 ? 5 DC A N1 1 ATOM 90 C C2 . DC A 1 5 ? 2.439 -5.351 0.707 1.00 14.66 ? 5 DC A C2 1 ATOM 91 O O2 . DC A 1 5 ? 1.309 -5.251 0.239 1.00 22.59 ? 5 DC A O2 1 ATOM 92 N N3 . DC A 1 5 ? 2.740 -5.408 2.009 1.00 20.86 ? 5 DC A N3 1 ATOM 93 C C4 . DC A 1 5 ? 4.003 -5.380 2.506 1.00 18.70 ? 5 DC A C4 1 ATOM 94 N N4 . DC A 1 5 ? 4.031 -5.459 3.875 1.00 24.99 ? 5 DC A N4 1 ATOM 95 C C5 . DC A 1 5 ? 5.127 -5.416 1.630 1.00 26.81 ? 5 DC A C5 1 ATOM 96 C C6 . DC A 1 5 ? 4.784 -5.405 0.289 1.00 22.64 ? 5 DC A C6 1 ATOM 97 P P . DG A 1 6 ? 1.125 -4.919 -5.730 1.00 45.60 ? 6 DG A P 1 ATOM 98 O OP1 . DG A 1 6 ? 0.468 -3.573 -5.706 1.00 49.29 ? 6 DG A OP1 1 ATOM 99 O OP2 . DG A 1 6 ? 0.138 -6.033 -5.794 1.00 36.85 ? 6 DG A OP2 1 ATOM 100 O "O5'" . DG A 1 6 ? 2.300 -5.229 -6.717 1.00 36.36 ? 6 DG A "O5'" 1 ATOM 101 C "C5'" . DG A 1 6 ? 2.141 -6.709 -6.367 1.00 35.66 ? 6 DG A "C5'" 1 ATOM 102 C "C4'" . DG A 1 6 ? 2.696 -7.849 -7.184 1.00 32.80 ? 6 DG A "C4'" 1 ATOM 103 O "O4'" . DG A 1 6 ? 3.863 -7.840 -6.408 1.00 28.83 ? 6 DG A "O4'" 1 ATOM 104 C "C3'" . DG A 1 6 ? 2.220 -9.261 -6.915 1.00 29.60 ? 6 DG A "C3'" 1 ATOM 105 O "O3'" . DG A 1 6 ? 1.188 -9.666 -7.857 1.00 46.35 ? 6 DG A "O3'" 1 ATOM 106 C "C2'" . DG A 1 6 ? 3.514 -10.089 -7.012 1.00 24.97 ? 6 DG A "C2'" 1 ATOM 107 C "C1'" . DG A 1 6 ? 4.543 -9.030 -6.583 1.00 30.65 ? 6 DG A "C1'" 1 ATOM 108 N N9 . DG A 1 6 ? 5.097 -9.158 -5.247 1.00 39.44 ? 6 DG A N9 1 ATOM 109 C C8 . DG A 1 6 ? 6.401 -9.495 -4.954 1.00 48.41 ? 6 DG A C8 1 ATOM 110 N N7 . DG A 1 6 ? 6.656 -9.559 -3.649 1.00 34.21 ? 6 DG A N7 1 ATOM 111 C C5 . DG A 1 6 ? 5.453 -9.299 -3.061 1.00 47.92 ? 6 DG A C5 1 ATOM 112 C C6 . DG A 1 6 ? 5.190 -9.273 -1.687 1.00 52.27 ? 6 DG A C6 1 ATOM 113 O O6 . DG A 1 6 ? 5.992 -9.513 -0.731 1.00 44.83 ? 6 DG A O6 1 ATOM 114 N N1 . DG A 1 6 ? 3.832 -8.929 -1.519 1.00 50.34 ? 6 DG A N1 1 ATOM 115 C C2 . DG A 1 6 ? 2.876 -8.736 -2.472 1.00 41.60 ? 6 DG A C2 1 ATOM 116 N N2 . DG A 1 6 ? 1.697 -8.426 -1.976 1.00 44.33 ? 6 DG A N2 1 ATOM 117 N N3 . DG A 1 6 ? 3.129 -8.769 -3.758 1.00 58.41 ? 6 DG A N3 1 ATOM 118 C C4 . DG A 1 6 ? 4.452 -9.048 -4.002 1.00 54.61 ? 6 DG A C4 1 ATOM 119 O "O5'" . DC B 2 1 ? -0.174 -9.758 8.158 1.00 39.21 ? 7 DC B "O5'" 1 ATOM 120 C "C5'" . DC B 2 1 ? -0.047 -10.256 6.796 1.00 58.02 ? 7 DC B "C5'" 1 ATOM 121 C "C4'" . DC B 2 1 ? -0.795 -9.336 5.764 1.00 44.06 ? 7 DC B "C4'" 1 ATOM 122 O "O4'" . DC B 2 1 ? 0.076 -8.614 4.804 1.00 45.16 ? 7 DC B "O4'" 1 ATOM 123 C "C3'" . DC B 2 1 ? -1.746 -10.016 4.749 1.00 53.51 ? 7 DC B "C3'" 1 ATOM 124 O "O3'" . DC B 2 1 ? -2.639 -8.941 4.268 1.00 59.59 ? 7 DC B "O3'" 1 ATOM 125 C "C2'" . DC B 2 1 ? -0.725 -10.438 3.693 1.00 40.81 ? 7 DC B "C2'" 1 ATOM 126 C "C1'" . DC B 2 1 ? -0.115 -9.069 3.512 1.00 20.94 ? 7 DC B "C1'" 1 ATOM 127 N N1 . DC B 2 1 ? 1.199 -9.075 3.176 1.00 24.27 ? 7 DC B N1 1 ATOM 128 C C2 . DC B 2 1 ? 1.595 -8.991 1.841 1.00 21.50 ? 7 DC B C2 1 ATOM 129 O O2 . DC B 2 1 ? 0.808 -8.921 0.848 1.00 21.83 ? 7 DC B O2 1 ATOM 130 N N3 . DC B 2 1 ? 2.937 -8.992 1.706 1.00 31.55 ? 7 DC B N3 1 ATOM 131 C C4 . DC B 2 1 ? 3.831 -9.094 2.741 1.00 17.47 ? 7 DC B C4 1 ATOM 132 N N4 . DC B 2 1 ? 5.128 -9.091 2.380 1.00 20.81 ? 7 DC B N4 1 ATOM 133 C C5 . DC B 2 1 ? 3.406 -9.176 4.071 1.00 22.95 ? 7 DC B C5 1 ATOM 134 C C6 . DC B 2 1 ? 2.064 -9.170 4.227 1.00 22.86 ? 7 DC B C6 1 ATOM 135 P P . DG B 2 2 ? -4.200 -8.878 3.704 1.00 49.67 ? 8 DG B P 1 ATOM 136 O OP1 . DG B 2 2 ? -4.738 -10.294 3.689 1.00 54.52 ? 8 DG B OP1 1 ATOM 137 O OP2 . DG B 2 2 ? -4.323 -7.920 2.487 1.00 66.51 ? 8 DG B OP2 1 ATOM 138 O "O5'" . DG B 2 2 ? -4.776 -7.985 4.914 1.00 52.68 ? 8 DG B "O5'" 1 ATOM 139 C "C5'" . DG B 2 2 ? -5.676 -6.956 4.692 1.00 48.51 ? 8 DG B "C5'" 1 ATOM 140 C "C4'" . DG B 2 2 ? -5.182 -6.116 5.782 1.00 22.71 ? 8 DG B "C4'" 1 ATOM 141 O "O4'" . DG B 2 2 ? -3.830 -6.397 5.982 1.00 26.15 ? 8 DG B "O4'" 1 ATOM 142 C "C3'" . DG B 2 2 ? -5.075 -4.786 5.248 1.00 32.60 ? 8 DG B "C3'" 1 ATOM 143 O "O3'" . DG B 2 2 ? -6.378 -4.450 5.421 1.00 46.02 ? 8 DG B "O3'" 1 ATOM 144 C "C2'" . DG B 2 2 ? -4.227 -4.161 6.313 1.00 26.93 ? 8 DG B "C2'" 1 ATOM 145 C "C1'" . DG B 2 2 ? -3.597 -5.416 6.911 1.00 25.33 ? 8 DG B "C1'" 1 ATOM 146 N N9 . DG B 2 2 ? -2.136 -5.384 6.818 1.00 29.44 ? 8 DG B N9 1 ATOM 147 C C8 . DG B 2 2 ? -1.373 -5.506 7.906 1.00 25.82 ? 8 DG B C8 1 ATOM 148 N N7 . DG B 2 2 ? -0.091 -5.406 7.629 1.00 23.77 ? 8 DG B N7 1 ATOM 149 C C5 . DG B 2 2 ? -0.013 -5.327 6.251 1.00 22.28 ? 8 DG B C5 1 ATOM 150 C C6 . DG B 2 2 ? 1.079 -5.287 5.364 1.00 33.88 ? 8 DG B C6 1 ATOM 151 O O6 . DG B 2 2 ? 2.328 -5.290 5.495 1.00 32.88 ? 8 DG B O6 1 ATOM 152 N N1 . DG B 2 2 ? 0.622 -5.156 4.067 1.00 23.74 ? 8 DG B N1 1 ATOM 153 C C2 . DG B 2 2 ? -0.670 -5.092 3.658 1.00 25.99 ? 8 DG B C2 1 ATOM 154 N N2 . DG B 2 2 ? -0.884 -4.988 2.351 1.00 30.48 ? 8 DG B N2 1 ATOM 155 N N3 . DG B 2 2 ? -1.661 -5.133 4.476 1.00 37.12 ? 8 DG B N3 1 ATOM 156 C C4 . DG B 2 2 ? -1.270 -5.270 5.747 1.00 28.26 ? 8 DG B C4 1 ATOM 157 P P . DT B 2 3 ? -6.961 -3.250 4.526 1.00 56.17 ? 9 DT B P 1 ATOM 158 O OP1 . DT B 2 3 ? -6.961 -2.002 5.387 1.00 47.48 ? 9 DT B OP1 1 ATOM 159 O OP2 . DT B 2 3 ? -8.031 -3.809 3.669 1.00 53.18 ? 9 DT B OP2 1 ATOM 160 O "O5'" . DT B 2 3 ? -5.977 -3.001 3.320 1.00 46.22 ? 9 DT B "O5'" 1 ATOM 161 C "C5'" . DT B 2 3 ? -5.713 -1.654 3.242 1.00 37.76 ? 9 DT B "C5'" 1 ATOM 162 C "C4'" . DT B 2 3 ? -4.931 -1.496 1.959 1.00 34.99 ? 9 DT B "C4'" 1 ATOM 163 O "O4'" . DT B 2 3 ? -3.513 -1.024 2.090 1.00 40.16 ? 9 DT B "O4'" 1 ATOM 164 C "C3'" . DT B 2 3 ? -4.968 -2.838 1.382 1.00 26.61 ? 9 DT B "C3'" 1 ATOM 165 O "O3'" . DT B 2 3 ? -4.664 -2.478 -0.006 1.00 37.54 ? 9 DT B "O3'" 1 ATOM 166 C "C2'" . DT B 2 3 ? -3.803 -3.262 2.353 1.00 34.12 ? 9 DT B "C2'" 1 ATOM 167 C "C1'" . DT B 2 3 ? -2.738 -2.153 2.233 1.00 25.96 ? 9 DT B "C1'" 1 ATOM 168 N N1 . DT B 2 3 ? -1.798 -1.902 3.303 1.00 26.67 ? 9 DT B N1 1 ATOM 169 C C2 . DT B 2 3 ? -0.560 -1.514 2.894 1.00 34.63 ? 9 DT B C2 1 ATOM 170 O O2 . DT B 2 3 ? -0.300 -1.392 1.762 1.00 36.65 ? 9 DT B O2 1 ATOM 171 N N3 . DT B 2 3 ? 0.389 -1.265 3.796 1.00 32.44 ? 9 DT B N3 1 ATOM 172 C C4 . DT B 2 3 ? 0.239 -1.463 5.128 1.00 36.03 ? 9 DT B C4 1 ATOM 173 O O4 . DT B 2 3 ? 1.228 -1.261 5.818 1.00 37.55 ? 9 DT B O4 1 ATOM 174 C C5 . DT B 2 3 ? -1.075 -1.871 5.595 1.00 41.63 ? 9 DT B C5 1 ATOM 175 C C7 . DT B 2 3 ? -1.408 -2.051 7.083 1.00 32.37 ? 9 DT B C7 1 ATOM 176 C C6 . DT B 2 3 ? -2.026 -2.089 4.633 1.00 33.23 ? 9 DT B C6 1 ATOM 177 P P . DG B 2 4 ? -5.479 -2.538 -1.384 1.00 41.99 ? 10 DG B P 1 ATOM 178 O OP1 . DG B 2 4 ? -6.419 -3.704 -1.401 1.00 48.57 ? 10 DG B OP1 1 ATOM 179 O OP2 . DG B 2 4 ? -4.375 -2.352 -2.300 1.00 32.43 ? 10 DG B OP2 1 ATOM 180 O "O5'" . DG B 2 4 ? -6.348 -1.244 -1.589 1.00 32.07 ? 10 DG B "O5'" 1 ATOM 181 C "C5'" . DG B 2 4 ? -6.130 -0.223 -2.532 1.00 28.29 ? 10 DG B "C5'" 1 ATOM 182 C "C4'" . DG B 2 4 ? -7.134 0.776 -1.932 1.00 23.79 ? 10 DG B "C4'" 1 ATOM 183 O "O4'" . DG B 2 4 ? -7.182 0.565 -0.557 1.00 21.76 ? 10 DG B "O4'" 1 ATOM 184 C "C3'" . DG B 2 4 ? -6.782 2.205 -2.033 1.00 30.43 ? 10 DG B "C3'" 1 ATOM 185 O "O3'" . DG B 2 4 ? -7.206 2.549 -3.403 1.00 27.78 ? 10 DG B "O3'" 1 ATOM 186 C "C2'" . DG B 2 4 ? -7.534 2.809 -0.878 1.00 17.22 ? 10 DG B "C2'" 1 ATOM 187 C "C1'" . DG B 2 4 ? -7.703 1.645 0.100 1.00 12.90 ? 10 DG B "C1'" 1 ATOM 188 N N9 . DG B 2 4 ? -7.009 1.697 1.362 1.00 20.40 ? 10 DG B N9 1 ATOM 189 C C8 . DG B 2 4 ? -7.538 1.802 2.658 1.00 23.64 ? 10 DG B C8 1 ATOM 190 N N7 . DG B 2 4 ? -6.616 1.895 3.621 1.00 24.66 ? 10 DG B N7 1 ATOM 191 C C5 . DG B 2 4 ? -5.314 1.842 2.993 1.00 27.85 ? 10 DG B C5 1 ATOM 192 C C6 . DG B 2 4 ? -3.861 1.875 3.432 1.00 38.86 ? 10 DG B C6 1 ATOM 193 O O6 . DG B 2 4 ? -3.215 1.952 4.580 1.00 31.07 ? 10 DG B O6 1 ATOM 194 N N1 . DG B 2 4 ? -3.005 1.838 2.324 1.00 26.13 ? 10 DG B N1 1 ATOM 195 C C2 . DG B 2 4 ? -3.439 1.732 1.041 1.00 21.56 ? 10 DG B C2 1 ATOM 196 N N2 . DG B 2 4 ? -2.572 1.651 0.035 1.00 27.48 ? 10 DG B N2 1 ATOM 197 N N3 . DG B 2 4 ? -4.678 1.695 0.632 1.00 23.93 ? 10 DG B N3 1 ATOM 198 C C4 . DG B 2 4 ? -5.608 1.759 1.609 1.00 18.79 ? 10 DG B C4 1 ATOM 199 P P . DT B 2 5 ? -7.375 4.062 -3.968 1.00 51.09 ? 11 DT B P 1 ATOM 200 O OP1 . DT B 2 5 ? -8.455 4.735 -3.126 1.00 66.06 ? 11 DT B OP1 1 ATOM 201 O OP2 . DT B 2 5 ? -7.451 3.508 -5.374 1.00 52.49 ? 11 DT B OP2 1 ATOM 202 O "O5'" . DT B 2 5 ? -6.047 5.052 -4.017 1.00 47.17 ? 11 DT B "O5'" 1 ATOM 203 C "C5'" . DT B 2 5 ? -5.590 6.151 -3.100 1.00 34.67 ? 11 DT B "C5'" 1 ATOM 204 C "C4'" . DT B 2 5 ? -4.057 6.136 -2.969 1.00 32.33 ? 11 DT B "C4'" 1 ATOM 205 O "O4'" . DT B 2 5 ? -3.612 6.643 -1.693 1.00 30.76 ? 11 DT B "O4'" 1 ATOM 206 C "C3'" . DT B 2 5 ? -3.305 4.809 -3.124 1.00 32.58 ? 11 DT B "C3'" 1 ATOM 207 O "O3'" . DT B 2 5 ? -2.004 4.938 -3.516 1.00 45.31 ? 11 DT B "O3'" 1 ATOM 208 C "C2'" . DT B 2 5 ? -3.162 4.257 -1.735 1.00 22.63 ? 11 DT B "C2'" 1 ATOM 209 C "C1'" . DT B 2 5 ? -2.948 5.533 -1.045 1.00 23.07 ? 11 DT B "C1'" 1 ATOM 210 N N1 . DT B 2 5 ? -3.520 5.542 0.199 1.00 21.91 ? 11 DT B N1 1 ATOM 211 C C2 . DT B 2 5 ? -2.541 5.608 1.033 1.00 23.39 ? 11 DT B C2 1 ATOM 212 O O2 . DT B 2 5 ? -1.455 5.572 0.545 1.00 26.92 ? 11 DT B O2 1 ATOM 213 N N3 . DT B 2 5 ? -2.881 5.705 2.333 1.00 25.04 ? 11 DT B N3 1 ATOM 214 C C4 . DT B 2 5 ? -4.190 5.811 2.810 1.00 19.92 ? 11 DT B C4 1 ATOM 215 O O4 . DT B 2 5 ? -4.198 5.917 4.042 1.00 32.04 ? 11 DT B O4 1 ATOM 216 C C5 . DT B 2 5 ? -5.255 5.778 1.786 1.00 30.47 ? 11 DT B C5 1 ATOM 217 C C7 . DT B 2 5 ? -6.760 5.828 1.995 1.00 35.35 ? 11 DT B C7 1 ATOM 218 C C6 . DT B 2 5 ? -4.858 5.645 0.497 1.00 27.39 ? 11 DT B C6 1 ATOM 219 P P . DG B 2 6 ? -1.440 4.408 -4.939 1.00 51.96 ? 12 DG B P 1 ATOM 220 O OP1 . DG B 2 6 ? -2.312 3.244 -5.295 1.00 60.34 ? 12 DG B OP1 1 ATOM 221 O OP2 . DG B 2 6 ? 0.006 4.096 -4.505 1.00 52.62 ? 12 DG B OP2 1 ATOM 222 O "O5'" . DG B 2 6 ? -1.765 5.568 -6.109 1.00 35.20 ? 12 DG B "O5'" 1 ATOM 223 C "C5'" . DG B 2 6 ? -0.905 6.732 -6.635 1.00 29.92 ? 12 DG B "C5'" 1 ATOM 224 C "C4'" . DG B 2 6 ? -1.826 7.741 -7.350 1.00 20.79 ? 12 DG B "C4'" 1 ATOM 225 O "O4'" . DG B 2 6 ? -3.023 7.660 -6.538 1.00 26.75 ? 12 DG B "O4'" 1 ATOM 226 C "C3'" . DG B 2 6 ? -1.597 9.245 -7.250 1.00 23.48 ? 12 DG B "C3'" 1 ATOM 227 O "O3'" . DG B 2 6 ? -0.891 9.825 -8.406 1.00 39.91 ? 12 DG B "O3'" 1 ATOM 228 C "C2'" . DG B 2 6 ? -2.985 9.894 -7.133 1.00 17.16 ? 12 DG B "C2'" 1 ATOM 229 C "C1'" . DG B 2 6 ? -3.904 8.789 -6.545 1.00 25.01 ? 12 DG B "C1'" 1 ATOM 230 N N9 . DG B 2 6 ? -4.729 9.042 -5.296 1.00 36.48 ? 12 DG B N9 1 ATOM 231 C C8 . DG B 2 6 ? -6.065 9.319 -5.141 1.00 38.60 ? 12 DG B C8 1 ATOM 232 N N7 . DG B 2 6 ? -6.504 9.492 -3.900 1.00 37.50 ? 12 DG B N7 1 ATOM 233 C C5 . DG B 2 6 ? -5.364 9.367 -3.131 1.00 35.01 ? 12 DG B C5 1 ATOM 234 C C6 . DG B 2 6 ? -5.090 9.498 -1.733 1.00 35.99 ? 12 DG B C6 1 ATOM 235 O O6 . DG B 2 6 ? -5.853 9.772 -0.781 1.00 34.22 ? 12 DG B O6 1 ATOM 236 N N1 . DG B 2 6 ? -3.740 9.310 -1.423 1.00 35.59 ? 12 DG B N1 1 ATOM 237 C C2 . DG B 2 6 ? -2.756 9.004 -2.294 1.00 32.75 ? 12 DG B C2 1 ATOM 238 N N2 . DG B 2 6 ? -1.503 8.758 -1.927 1.00 24.47 ? 12 DG B N2 1 ATOM 239 N N3 . DG B 2 6 ? -3.010 8.916 -3.561 1.00 52.34 ? 12 DG B N3 1 ATOM 240 C C4 . DG B 2 6 ? -4.299 9.103 -3.955 1.00 44.49 ? 12 DG B C4 1 HETATM 241 O O . HOH C 3 . ? 4.064 13.576 4.258 1.00 31.56 ? 7 HOH A O 1 HETATM 242 O O . HOH C 3 . ? 7.436 4.654 2.368 1.00 41.39 ? 8 HOH A O 1 HETATM 243 O O . HOH C 3 . ? 5.923 11.784 0.539 1.00 42.70 ? 10 HOH A O 1 HETATM 244 O O . HOH C 3 . ? 1.523 1.707 7.402 1.00 40.27 ? 13 HOH A O 1 HETATM 245 O O . HOH C 3 . ? 4.653 6.027 -1.399 1.00 47.98 ? 15 HOH A O 1 HETATM 246 O O . HOH C 3 . ? 9.317 15.114 1.246 1.00 54.42 ? 16 HOH A O 1 HETATM 247 O O . HOH C 3 . ? 2.189 7.299 -1.380 1.00 36.21 ? 17 HOH A O 1 HETATM 248 O O . HOH C 3 . ? 2.555 11.492 7.283 1.00 40.07 ? 18 HOH A O 1 HETATM 249 O O . HOH D 3 . ? -9.381 -1.352 7.048 1.00 32.06 ? 13 HOH B O 1 HETATM 250 O O . HOH D 3 . ? -8.799 9.991 -0.717 1.00 44.03 ? 14 HOH B O 1 HETATM 251 O O . HOH D 3 . ? -10.069 8.525 -2.552 1.00 43.21 ? 15 HOH B O 1 HETATM 252 O O . HOH D 3 . ? -3.862 1.681 -5.352 1.00 45.33 ? 16 HOH B O 1 HETATM 253 O O . HOH D 3 . ? -3.209 -1.666 -5.737 1.00 24.69 ? 17 HOH B O 1 HETATM 254 O O . HOH D 3 . ? -4.926 3.452 7.318 1.00 28.77 ? 18 HOH B O 1 HETATM 255 O O . HOH D 3 . ? 2.513 5.049 -4.273 1.00 34.63 ? 19 HOH B O 1 HETATM 256 O O . HOH D 3 . ? -2.437 -1.286 -2.371 1.00 32.17 ? 20 HOH B O 1 HETATM 257 O O . HOH D 3 . ? -1.890 -7.692 -0.626 1.00 34.92 ? 21 HOH B O 1 HETATM 258 O O . HOH D 3 . ? -3.906 -3.288 -8.150 1.00 42.22 ? 22 HOH B O 1 HETATM 259 O O . HOH D 3 . ? 0.399 2.582 -6.536 1.00 47.25 ? 23 HOH B O 1 HETATM 260 O O . HOH D 3 . ? 0.729 4.307 -0.578 1.00 35.78 ? 24 HOH B O 1 #
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