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STRUCTURAL BIOLOGY
COMMUNICATIONS
Volume 66
|
Part 9
|
September 2010
|
Pages 1028–1031
https://doi.org/10.1107/S1744309110031696
Open
access
ISSN: 2053-230X
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STRUCTURAL BIOLOGY
COMMUNICATIONS
Volume 66
|
Part 9
|
September 2010
|
Pages 1028–1031
https://doi.org/10.1107/S1744309110031696
Open
access
ISSN: 2053-230X
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data_3LLN # _entry.id 3LLN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3LLN pdb_00003lln 10.2210/pdb3lln/pdb NDB NA0435 ? ? RCSB RCSB057429 ? ? WWPDB D_1000057429 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2H0N 'CONTAINS THE SAME TYPE OF SYNTHETIC NUCLEOSIDES' unspecified PDB 2P8D 'CONTAINS THE SAME TYPE OF SYNTHETIC NUCLEOSIDES' unspecified PDB 3FL6 'IDENTICAL SEQUENCE' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3LLN _pdbx_database_status.recvd_initial_deposition_date 2010-01-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Robeyns, K.' 1 'Herdewijn, P.' 2 'Van Meervelt, L.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Comparison between the orthorhombic and tetragonal forms of the heptamer sequence d[GCG(xT)GCG]/d(CGCACGC)' 'Acta Crystallogr.,Sect.F' 66 1028 1031 2010 ? DK 1744-3091 ? ? 20823518 10.1107/S1744309110031696 1 'Structure of the fully modified left-handed cyclohexene nucleic acid sequence GTGTACAC.' J.Am.Chem.Soc. 130 1979 1984 2008 JACSAT US 0002-7863 0004 ? 18198873 10.1021/ja077313f 2 'Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(CGCGAATTCGCG).' 'Nucleic Acids Res.' 36 1407 1414 2008 NARHAD UK 0305-1048 0389 ? 18160414 10.1093/nar/gkm1132 3 'Direct observation of two cyclohexenyl (CeNA) ring conformations in duplex DNA' 'Artificial DNA' 1 1 7 2010 ? US 1949-095X ? ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Robeyns, K.' 1 ? primary 'Herdewijn, P.' 2 ? primary 'Van Meervelt, L.' 3 ? 1 'Robeyns, K.' 4 ? 1 'Herdewijn, P.' 5 ? 1 'Van Meervelt, L.' 6 ? 2 'Robeyns, K.' 7 ? 2 'Herdewijn, P.' 8 ? 2 'Van Meervelt, L.' 9 ? 3 'Robeyns, K.' 10 ? 3 'Herdewijn, P.' 11 ? 3 'Van Meervelt, L.' 12 ? # _cell.entry_id 3LLN _cell.length_a 25.482 _cell.length_b 25.482 _cell.length_c 81.147 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LLN _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3') ; 2164.460 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*GP*CP*AP*CP*GP*C)-3') ; 2083.388 1 ? ? ? ? 3 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 1 ? ? ? ? 4 water nat water 18.015 9 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DG)(DC)(DG)(XTR)(DG)(DC)(DG)' GCGTGCG A ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DA)(DC)(DG)(DC)' CGCACGC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 XTR n 1 5 DG n 1 6 DC n 1 7 DG n 2 1 DC n 2 2 DG n 2 3 DC n 2 4 DA n 2 5 DC n 2 6 DG n 2 7 DC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'SYNTHESIZED ON SOLID SUPPORT' 2 1 sample ? ? ? ? ? 'SYNTHESIZED ON SOLID SUPPORT' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3LLN 3LLN 1 ? ? ? 2 PDB 3LLN 3LLN 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3LLN A 1 ? 7 ? 3LLN 1 ? 7 ? 1 7 2 2 3LLN B 1 ? 7 ? 3LLN 11 ? 17 ? 11 17 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 XTR 'DNA linking' n '[(1R,4S,6S)-6-hydroxy-4-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)cyclohex-2-en-1-yl]methyl dihydrogen phosphate' ? 'C12 H17 N2 O7 P' 332.246 # _exptl.entry_id 3LLN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details ;10%(V/V) 2-METHYL-2,4-PENTANEDIOL(MPD), 20MM COBALT HEXAMINE, 40MM POTASSIUM CACODYLATE BUFFERED AT PH=5.5, AND 80/12MM KCL/NACL, VAPOR DIFFUSION, HANGING DROP, temperature 289K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2007-09-06 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9537 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X12' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X12 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9537 # _reflns.entry_id 3LLN _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 18.55 _reflns.d_resolution_high 3 _reflns.number_obs 681 _reflns.number_all 681 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.105 _reflns.pdbx_Rsym_value 0.105 _reflns.pdbx_netI_over_sigmaI 10.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 11.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3 _reflns_shell.d_res_low 3.16 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.174 _reflns_shell.pdbx_Rsym_value 0.174 _reflns_shell.meanI_over_sigI_obs 4.5 _reflns_shell.pdbx_redundancy 12.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 93 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3LLN _refine.ls_number_reflns_obs 678 _refine.ls_number_reflns_all 678 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.15 _refine.ls_d_res_high 3.00 _refine.ls_percent_reflns_obs 98.55 _refine.ls_R_factor_obs .22599 _refine.ls_R_factor_all .22599 _refine.ls_R_factor_R_work .22599 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc .960 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 71.704 _refine.aniso_B[1][1] 6.73 _refine.aniso_B[2][2] 6.73 _refine.aniso_B[3][3] -13.45 _refine.aniso_B[1][2] .00 _refine.aniso_B[1][3] .00 _refine.aniso_B[2][3] .00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii .80 _refine.pdbx_solvent_shrinkage_radii .80 _refine.pdbx_ls_cross_valid_method NONE _refine.details ? _refine.pdbx_starting_model 'PDB entry 3FL6 (one biological unit)' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ISOTROPIC _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details NONE _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML .291 _refine.overall_SU_B 14.930 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 282 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 9 _refine_hist.number_atoms_total 298 _refine_hist.d_res_high 3.00 _refine_hist.d_res_low 18.15 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d .012 .022 ? 323 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.943 2.922 ? 607 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr .122 .200 ? 53 'X-RAY DIFFRACTION' ? r_gen_planes_refined .011 .020 ? 151 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.103 3.000 ? 321 'X-RAY DIFFRACTION' ? r_scangle_it 3.229 4.500 ? 497 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.001 _refine_ls_shell.d_res_low 3.079 _refine_ls_shell.number_reflns_R_work 41 _refine_ls_shell.R_factor_R_work .195 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 678 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3LLN _struct.title 'Comparison between the orthorhombic an tetragonal form of the heptamer sequence d(GCG(xT)GCG)/d(CGCACGC).' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LLN _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DOUBLE HELIX, CENA, SUGAR MODIFICATION, RIGHT-HANDED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 3 "O3'" ? ? ? 1_555 A XTR 4 P ? ? A DG 3 A XTR 4 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale2 covale both ? A XTR 4 "O3'" ? ? ? 1_555 A DG 5 P ? ? A XTR 4 A DG 5 1_555 ? ? ? ? ? ? ? 1.603 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 1 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 1 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 1 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 2 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 2 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 2 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 3 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 3 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 3 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A XTR 4 N3 ? ? ? 1_555 B DA 4 N1 ? ? A XTR 4 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A XTR 4 O4 ? ? ? 1_555 B DA 4 N6 ? ? A XTR 4 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 5 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 5 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 5 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 6 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 6 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 6 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NCO _struct_site.pdbx_auth_seq_id 8 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE NCO A 8' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 DC A 2 ? DC A 2 . ? 7_565 ? 2 AC1 4 XTR A 4 ? XTR A 4 . ? 1_555 ? 3 AC1 4 DG A 5 ? DG A 5 . ? 1_555 ? 4 AC1 4 DA B 4 ? DA B 14 . ? 1_555 ? # _database_PDB_matrix.entry_id 3LLN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3LLN _atom_sites.fract_transf_matrix[1][1] .039244 _atom_sites.fract_transf_matrix[1][2] .000000 _atom_sites.fract_transf_matrix[1][3] .000000 _atom_sites.fract_transf_matrix[2][1] .000000 _atom_sites.fract_transf_matrix[2][2] .039244 _atom_sites.fract_transf_matrix[2][3] .000000 _atom_sites.fract_transf_matrix[3][1] .000000 _atom_sites.fract_transf_matrix[3][2] .000000 _atom_sites.fract_transf_matrix[3][3] .012323 _atom_sites.fract_transf_vector[1] .00000 _atom_sites.fract_transf_vector[2] .00000 _atom_sites.fract_transf_vector[3] .00000 # loop_ _atom_type.symbol C CO N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? -14.067 -7.141 8.347 1.00 58.77 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? -14.758 -6.663 9.544 1.00 61.05 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? -16.129 -6.231 9.082 1.00 61.60 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? -16.164 -4.777 9.126 1.00 59.75 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? -16.321 -6.648 7.619 1.00 63.27 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? -17.661 -7.143 7.302 1.00 67.72 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? -15.822 -5.416 6.842 1.00 61.88 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? -15.756 -4.255 7.859 1.00 59.37 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? -14.426 -3.616 7.981 1.00 55.97 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? -13.209 -4.258 8.096 1.00 53.99 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? -12.184 -3.472 8.210 1.00 50.56 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? -12.745 -2.211 8.177 1.00 51.47 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? -12.115 -0.945 8.261 1.00 50.87 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? -10.909 -0.698 8.382 1.00 50.20 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? -13.027 0.104 8.223 1.00 47.75 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? -14.371 -0.051 8.081 1.00 46.86 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? -15.054 1.091 8.043 1.00 42.22 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? -14.982 -1.234 7.981 1.00 49.39 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? -14.116 -2.273 8.044 1.00 52.28 ? 1 DG A C4 1 ATOM 20 P P . DC A 1 2 ? -18.591 -6.383 6.212 1.00 74.64 ? 2 DC A P 1 ATOM 21 O OP1 . DC A 1 2 ? -19.911 -7.065 6.170 1.00 72.80 ? 2 DC A OP1 1 ATOM 22 O OP2 . DC A 1 2 ? -17.812 -6.265 4.945 1.00 72.89 ? 2 DC A OP2 1 ATOM 23 O "O5'" . DC A 1 2 ? -18.772 -4.910 6.867 1.00 75.69 ? 2 DC A "O5'" 1 ATOM 24 C "C5'" . DC A 1 2 ? -19.377 -3.804 6.193 1.00 78.02 ? 2 DC A "C5'" 1 ATOM 25 C "C4'" . DC A 1 2 ? -18.526 -2.901 5.287 1.00 80.66 ? 2 DC A "C4'" 1 ATOM 26 O "O4'" . DC A 1 2 ? -17.137 -2.799 5.713 1.00 81.02 ? 2 DC A "O4'" 1 ATOM 27 C "C3'" . DC A 1 2 ? -18.450 -3.212 3.798 1.00 82.34 ? 2 DC A "C3'" 1 ATOM 28 O "O3'" . DC A 1 2 ? -19.233 -2.253 3.152 1.00 84.42 ? 2 DC A "O3'" 1 ATOM 29 C "C2'" . DC A 1 2 ? -16.978 -2.991 3.391 1.00 81.66 ? 2 DC A "C2'" 1 ATOM 30 C "C1'" . DC A 1 2 ? -16.395 -2.302 4.614 1.00 81.36 ? 2 DC A "C1'" 1 ATOM 31 N N1 . DC A 1 2 ? -14.919 -2.505 4.805 1.00 82.07 ? 2 DC A N1 1 ATOM 32 C C2 . DC A 1 2 ? -14.059 -1.391 4.927 1.00 83.30 ? 2 DC A C2 1 ATOM 33 O O2 . DC A 1 2 ? -14.530 -0.249 4.946 1.00 82.54 ? 2 DC A O2 1 ATOM 34 N N3 . DC A 1 2 ? -12.714 -1.579 5.055 1.00 83.78 ? 2 DC A N3 1 ATOM 35 C C4 . DC A 1 2 ? -12.207 -2.812 5.016 1.00 83.70 ? 2 DC A C4 1 ATOM 36 N N4 . DC A 1 2 ? -10.886 -2.965 5.140 1.00 83.00 ? 2 DC A N4 1 ATOM 37 C C5 . DC A 1 2 ? -13.055 -3.950 4.856 1.00 84.15 ? 2 DC A C5 1 ATOM 38 C C6 . DC A 1 2 ? -14.377 -3.753 4.734 1.00 83.22 ? 2 DC A C6 1 ATOM 39 P P . DG A 1 3 ? -20.396 -2.723 2.177 1.00 85.13 ? 3 DG A P 1 ATOM 40 O OP1 . DG A 1 3 ? -21.370 -3.498 2.992 1.00 86.01 ? 3 DG A OP1 1 ATOM 41 O OP2 . DG A 1 3 ? -19.764 -3.362 1.003 1.00 85.09 ? 3 DG A OP2 1 ATOM 42 O "O5'" . DG A 1 3 ? -21.016 -1.322 1.706 1.00 84.92 ? 3 DG A "O5'" 1 ATOM 43 C "C5'" . DG A 1 3 ? -20.697 -0.123 2.452 1.00 84.33 ? 3 DG A "C5'" 1 ATOM 44 C "C4'" . DG A 1 3 ? -19.794 0.842 1.689 1.00 83.74 ? 3 DG A "C4'" 1 ATOM 45 O "O4'" . DG A 1 3 ? -18.404 0.498 1.913 1.00 81.49 ? 3 DG A "O4'" 1 ATOM 46 C "C3'" . DG A 1 3 ? -19.960 0.899 0.169 1.00 84.70 ? 3 DG A "C3'" 1 ATOM 47 O "O3'" . DG A 1 3 ? -19.815 2.238 -0.313 1.00 87.22 ? 3 DG A "O3'" 1 ATOM 48 C "C2'" . DG A 1 3 ? -18.796 0.036 -0.295 1.00 82.91 ? 3 DG A "C2'" 1 ATOM 49 C "C1'" . DG A 1 3 ? -17.745 0.569 0.663 1.00 81.47 ? 3 DG A "C1'" 1 ATOM 50 N N9 . DG A 1 3 ? -16.529 -0.237 0.727 1.00 79.99 ? 3 DG A N9 1 ATOM 51 C C8 . DG A 1 3 ? -16.481 -1.605 0.576 1.00 79.05 ? 3 DG A C8 1 ATOM 52 N N7 . DG A 1 3 ? -15.285 -2.090 0.682 1.00 78.31 ? 3 DG A N7 1 ATOM 53 C C5 . DG A 1 3 ? -14.492 -0.971 0.914 1.00 77.90 ? 3 DG A C5 1 ATOM 54 C C6 . DG A 1 3 ? -13.100 -0.911 1.127 1.00 77.79 ? 3 DG A C6 1 ATOM 55 O O6 . DG A 1 3 ? -12.296 -1.849 1.162 1.00 78.54 ? 3 DG A O6 1 ATOM 56 N N1 . DG A 1 3 ? -12.655 0.396 1.349 1.00 75.48 ? 3 DG A N1 1 ATOM 57 C C2 . DG A 1 3 ? -13.471 1.502 1.361 1.00 74.39 ? 3 DG A C2 1 ATOM 58 N N2 . DG A 1 3 ? -12.861 2.679 1.584 1.00 71.94 ? 3 DG A N2 1 ATOM 59 N N3 . DG A 1 3 ? -14.785 1.449 1.160 1.00 74.69 ? 3 DG A N3 1 ATOM 60 C C4 . DG A 1 3 ? -15.230 0.184 0.950 1.00 77.03 ? 3 DG A C4 1 HETATM 61 C "C4'" . XTR A 1 4 ? -17.918 5.563 -1.816 1.00 82.87 ? 4 XTR A "C4'" 1 HETATM 62 C "C7'" . XTR A 1 4 ? -16.407 4.013 -0.528 1.00 83.30 ? 4 XTR A "C7'" 1 HETATM 63 C "C6'" . XTR A 1 4 ? -17.561 4.687 -0.629 1.00 83.24 ? 4 XTR A "C6'" 1 HETATM 64 C "C1'" . XTR A 1 4 ? -15.290 4.020 -1.554 1.00 82.90 ? 4 XTR A "C1'" 1 HETATM 65 O O4 . XTR A 1 4 ? -13.550 -0.986 -2.854 1.00 83.99 ? 4 XTR A O4 1 HETATM 66 C C4 . XTR A 1 4 ? -13.963 0.127 -2.569 1.00 83.82 ? 4 XTR A C4 1 HETATM 67 C C5 . XTR A 1 4 ? -15.376 0.427 -2.497 1.00 84.29 ? 4 XTR A C5 1 HETATM 68 C C5M . XTR A 1 4 ? -16.395 -0.645 -2.786 1.00 83.45 ? 4 XTR A C5M 1 HETATM 69 C C6 . XTR A 1 4 ? -15.735 1.681 -2.170 1.00 83.07 ? 4 XTR A C6 1 HETATM 70 N N3 . XTR A 1 4 ? -13.110 1.181 -2.301 1.00 82.47 ? 4 XTR A N3 1 HETATM 71 C C2 . XTR A 1 4 ? -13.467 2.457 -1.967 1.00 82.03 ? 4 XTR A C2 1 HETATM 72 O O2 . XTR A 1 4 ? -12.640 3.317 -1.736 1.00 81.79 ? 4 XTR A O2 1 HETATM 73 N N1 . XTR A 1 4 ? -14.821 2.680 -1.898 1.00 82.28 ? 4 XTR A N1 1 HETATM 74 C "C2'" . XTR A 1 4 ? -15.710 4.683 -2.853 1.00 83.10 ? 4 XTR A "C2'" 1 HETATM 75 C "C3'" . XTR A 1 4 ? -16.715 5.818 -2.732 1.00 82.89 ? 4 XTR A "C3'" 1 HETATM 76 P P . XTR A 1 4 ? -19.996 2.582 -1.890 1.00 90.40 ? 4 XTR A P 1 HETATM 77 O OP1 . XTR A 1 4 ? -21.363 2.154 -2.325 1.00 88.69 ? 4 XTR A OP1 1 HETATM 78 O OP2 . XTR A 1 4 ? -18.796 2.094 -2.629 1.00 89.84 ? 4 XTR A OP2 1 HETATM 79 O "O5'" . XTR A 1 4 ? -19.948 4.201 -1.897 1.00 86.52 ? 4 XTR A "O5'" 1 HETATM 80 C "C5'" . XTR A 1 4 ? -19.005 4.930 -2.664 1.00 83.47 ? 4 XTR A "C5'" 1 HETATM 81 O "O3'" . XTR A 1 4 ? -15.982 7.002 -2.447 1.00 81.73 ? 4 XTR A "O3'" 1 ATOM 82 P P . DG A 1 5 ? -15.357 7.821 -3.675 1.00 82.79 ? 5 DG A P 1 ATOM 83 O OP1 . DG A 1 5 ? -16.005 9.158 -3.688 1.00 84.71 ? 5 DG A OP1 1 ATOM 84 O OP2 . DG A 1 5 ? -15.414 6.965 -4.892 1.00 80.54 ? 5 DG A OP2 1 ATOM 85 O "O5'" . DG A 1 5 ? -13.815 7.956 -3.251 1.00 78.09 ? 5 DG A "O5'" 1 ATOM 86 C "C5'" . DG A 1 5 ? -12.851 8.490 -4.177 1.00 72.01 ? 5 DG A "C5'" 1 ATOM 87 C "C4'" . DG A 1 5 ? -12.418 7.531 -5.293 1.00 68.99 ? 5 DG A "C4'" 1 ATOM 88 O "O4'" . DG A 1 5 ? -12.707 6.099 -5.050 1.00 67.83 ? 5 DG A "O4'" 1 ATOM 89 C "C3'" . DG A 1 5 ? -13.023 7.860 -6.660 1.00 65.78 ? 5 DG A "C3'" 1 ATOM 90 O "O3'" . DG A 1 5 ? -11.991 7.996 -7.647 1.00 64.47 ? 5 DG A "O3'" 1 ATOM 91 C "C2'" . DG A 1 5 ? -13.878 6.624 -6.923 1.00 63.46 ? 5 DG A "C2'" 1 ATOM 92 C "C1'" . DG A 1 5 ? -12.937 5.575 -6.342 1.00 62.10 ? 5 DG A "C1'" 1 ATOM 93 N N9 . DG A 1 5 ? -13.494 4.216 -6.234 1.00 56.53 ? 5 DG A N9 1 ATOM 94 C C8 . DG A 1 5 ? -14.782 3.882 -6.582 1.00 54.06 ? 5 DG A C8 1 ATOM 95 N N7 . DG A 1 5 ? -15.050 2.611 -6.495 1.00 50.76 ? 5 DG A N7 1 ATOM 96 C C5 . DG A 1 5 ? -13.865 2.034 -6.072 1.00 49.43 ? 5 DG A C5 1 ATOM 97 C C6 . DG A 1 5 ? -13.583 0.663 -5.822 1.00 46.50 ? 5 DG A C6 1 ATOM 98 O O6 . DG A 1 5 ? -14.353 -0.315 -5.919 1.00 38.95 ? 5 DG A O6 1 ATOM 99 N N1 . DG A 1 5 ? -12.253 0.482 -5.445 1.00 44.71 ? 5 DG A N1 1 ATOM 100 C C2 . DG A 1 5 ? -11.337 1.495 -5.344 1.00 46.24 ? 5 DG A C2 1 ATOM 101 N N2 . DG A 1 5 ? -10.109 1.137 -4.963 1.00 46.21 ? 5 DG A N2 1 ATOM 102 N N3 . DG A 1 5 ? -11.586 2.787 -5.587 1.00 48.73 ? 5 DG A N3 1 ATOM 103 C C4 . DG A 1 5 ? -12.879 2.999 -5.939 1.00 52.26 ? 5 DG A C4 1 ATOM 104 P P . DC A 1 6 ? -12.369 8.224 -9.203 1.00 66.71 ? 6 DC A P 1 ATOM 105 O OP1 . DC A 1 6 ? -12.821 9.635 -9.332 1.00 63.48 ? 6 DC A OP1 1 ATOM 106 O OP2 . DC A 1 6 ? -13.260 7.113 -9.656 1.00 65.74 ? 6 DC A OP2 1 ATOM 107 O "O5'" . DC A 1 6 ? -10.986 7.950 -9.975 1.00 64.36 ? 6 DC A "O5'" 1 ATOM 108 C "C5'" . DC A 1 6 ? -9.832 7.609 -9.206 1.00 66.97 ? 6 DC A "C5'" 1 ATOM 109 C "C4'" . DC A 1 6 ? -9.291 6.209 -9.453 1.00 67.87 ? 6 DC A "C4'" 1 ATOM 110 O "O4'" . DC A 1 6 ? -10.073 5.160 -8.815 1.00 67.26 ? 6 DC A "O4'" 1 ATOM 111 C "C3'" . DC A 1 6 ? -9.130 5.807 -10.912 1.00 69.42 ? 6 DC A "C3'" 1 ATOM 112 O "O3'" . DC A 1 6 ? -7.806 5.420 -11.002 1.00 71.43 ? 6 DC A "O3'" 1 ATOM 113 C "C2'" . DC A 1 6 ? -10.017 4.581 -11.056 1.00 67.22 ? 6 DC A "C2'" 1 ATOM 114 C "C1'" . DC A 1 6 ? -10.050 4.024 -9.642 1.00 63.90 ? 6 DC A "C1'" 1 ATOM 115 N N1 . DC A 1 6 ? -11.273 3.204 -9.441 1.00 61.59 ? 6 DC A N1 1 ATOM 116 C C2 . DC A 1 6 ? -11.092 1.835 -9.215 1.00 60.71 ? 6 DC A C2 1 ATOM 117 O O2 . DC A 1 6 ? -9.931 1.393 -9.166 1.00 63.12 ? 6 DC A O2 1 ATOM 118 N N3 . DC A 1 6 ? -12.179 1.042 -9.063 1.00 58.44 ? 6 DC A N3 1 ATOM 119 C C4 . DC A 1 6 ? -13.402 1.578 -9.143 1.00 59.88 ? 6 DC A C4 1 ATOM 120 N N4 . DC A 1 6 ? -14.434 0.741 -8.990 1.00 58.30 ? 6 DC A N4 1 ATOM 121 C C5 . DC A 1 6 ? -13.623 2.983 -9.376 1.00 59.97 ? 6 DC A C5 1 ATOM 122 C C6 . DC A 1 6 ? -12.533 3.754 -9.524 1.00 60.66 ? 6 DC A C6 1 ATOM 123 P P . DG A 1 7 ? -6.952 5.629 -12.323 1.00 75.17 ? 7 DG A P 1 ATOM 124 O OP1 . DG A 1 7 ? -5.611 5.037 -12.005 1.00 75.08 ? 7 DG A OP1 1 ATOM 125 O OP2 . DG A 1 7 ? -7.079 7.031 -12.803 1.00 70.83 ? 7 DG A OP2 1 ATOM 126 O "O5'" . DG A 1 7 ? -7.746 4.745 -13.394 1.00 75.29 ? 7 DG A "O5'" 1 ATOM 127 C "C5'" . DG A 1 7 ? -7.493 3.347 -13.380 1.00 77.17 ? 7 DG A "C5'" 1 ATOM 128 C "C4'" . DG A 1 7 ? -8.266 2.766 -14.523 1.00 78.44 ? 7 DG A "C4'" 1 ATOM 129 O "O4'" . DG A 1 7 ? -9.652 3.051 -14.243 1.00 79.59 ? 7 DG A "O4'" 1 ATOM 130 C "C3'" . DG A 1 7 ? -7.944 3.484 -15.816 1.00 80.12 ? 7 DG A "C3'" 1 ATOM 131 O "O3'" . DG A 1 7 ? -6.900 2.790 -16.480 1.00 80.77 ? 7 DG A "O3'" 1 ATOM 132 C "C2'" . DG A 1 7 ? -9.282 3.456 -16.547 1.00 81.28 ? 7 DG A "C2'" 1 ATOM 133 C "C1'" . DG A 1 7 ? -10.269 3.617 -15.382 1.00 83.03 ? 7 DG A "C1'" 1 ATOM 134 N N9 . DG A 1 7 ? -10.670 4.999 -15.087 1.00 85.94 ? 7 DG A N9 1 ATOM 135 C C8 . DG A 1 7 ? -10.136 6.112 -15.689 1.00 88.31 ? 7 DG A C8 1 ATOM 136 N N7 . DG A 1 7 ? -10.670 7.238 -15.300 1.00 89.17 ? 7 DG A N7 1 ATOM 137 C C5 . DG A 1 7 ? -11.611 6.859 -14.356 1.00 88.37 ? 7 DG A C5 1 ATOM 138 C C6 . DG A 1 7 ? -12.479 7.673 -13.585 1.00 89.15 ? 7 DG A C6 1 ATOM 139 O O6 . DG A 1 7 ? -12.572 8.909 -13.590 1.00 90.35 ? 7 DG A O6 1 ATOM 140 N N1 . DG A 1 7 ? -13.298 6.923 -12.743 1.00 88.40 ? 7 DG A N1 1 ATOM 141 C C2 . DG A 1 7 ? -13.265 5.554 -12.665 1.00 87.19 ? 7 DG A C2 1 ATOM 142 N N2 . DG A 1 7 ? -14.134 5.027 -11.794 1.00 87.30 ? 7 DG A N2 1 ATOM 143 N N3 . DG A 1 7 ? -12.452 4.780 -13.384 1.00 86.14 ? 7 DG A N3 1 ATOM 144 C C4 . DG A 1 7 ? -11.637 5.485 -14.210 1.00 86.76 ? 7 DG A C4 1 ATOM 145 O "O5'" . DC B 2 1 ? -12.095 -6.622 -13.453 1.00 86.75 ? 11 DC B "O5'" 1 ATOM 146 C "C5'" . DC B 2 1 ? -11.702 -6.300 -12.118 1.00 89.83 ? 11 DC B "C5'" 1 ATOM 147 C "C4'" . DC B 2 1 ? -12.131 -7.397 -11.152 1.00 90.47 ? 11 DC B "C4'" 1 ATOM 148 O "O4'" . DC B 2 1 ? -13.170 -6.921 -10.262 1.00 88.88 ? 11 DC B "O4'" 1 ATOM 149 C "C3'" . DC B 2 1 ? -12.692 -8.668 -11.810 1.00 91.40 ? 11 DC B "C3'" 1 ATOM 150 O "O3'" . DC B 2 1 ? -12.398 -9.887 -11.091 1.00 92.83 ? 11 DC B "O3'" 1 ATOM 151 C "C2'" . DC B 2 1 ? -14.200 -8.414 -11.855 1.00 89.47 ? 11 DC B "C2'" 1 ATOM 152 C "C1'" . DC B 2 1 ? -14.423 -7.445 -10.691 1.00 88.76 ? 11 DC B "C1'" 1 ATOM 153 N N1 . DC B 2 1 ? -15.321 -6.317 -11.061 1.00 85.73 ? 11 DC B N1 1 ATOM 154 C C2 . DC B 2 1 ? -15.705 -5.393 -10.079 1.00 84.12 ? 11 DC B C2 1 ATOM 155 O O2 . DC B 2 1 ? -15.309 -5.521 -8.910 1.00 81.54 ? 11 DC B O2 1 ATOM 156 N N3 . DC B 2 1 ? -16.522 -4.382 -10.447 1.00 84.17 ? 11 DC B N3 1 ATOM 157 C C4 . DC B 2 1 ? -16.949 -4.297 -11.710 1.00 84.40 ? 11 DC B C4 1 ATOM 158 N N4 . DC B 2 1 ? -17.765 -3.286 -12.020 1.00 84.47 ? 11 DC B N4 1 ATOM 159 C C5 . DC B 2 1 ? -16.556 -5.224 -12.714 1.00 83.63 ? 11 DC B C5 1 ATOM 160 C C6 . DC B 2 1 ? -15.754 -6.217 -12.347 1.00 83.56 ? 11 DC B C6 1 ATOM 161 P P . DG B 2 2 ? -11.246 -9.938 -9.977 1.00 93.52 ? 12 DG B P 1 ATOM 162 O OP1 . DG B 2 2 ? -10.935 -11.366 -9.749 1.00 94.41 ? 12 DG B OP1 1 ATOM 163 O OP2 . DG B 2 2 ? -11.690 -9.167 -8.786 1.00 92.35 ? 12 DG B OP2 1 ATOM 164 O "O5'" . DG B 2 2 ? -10.046 -9.167 -10.728 1.00 91.00 ? 12 DG B "O5'" 1 ATOM 165 C "C5'" . DG B 2 2 ? -8.711 -9.135 -10.252 1.00 88.78 ? 12 DG B "C5'" 1 ATOM 166 C "C4'" . DG B 2 2 ? -8.461 -8.048 -9.217 1.00 86.22 ? 12 DG B "C4'" 1 ATOM 167 O "O4'" . DG B 2 2 ? -9.404 -6.940 -9.289 1.00 83.50 ? 12 DG B "O4'" 1 ATOM 168 C "C3'" . DG B 2 2 ? -8.485 -8.547 -7.775 1.00 84.87 ? 12 DG B "C3'" 1 ATOM 169 O "O3'" . DG B 2 2 ? -7.228 -8.206 -7.171 1.00 84.33 ? 12 DG B "O3'" 1 ATOM 170 C "C2'" . DG B 2 2 ? -9.661 -7.793 -7.163 1.00 83.27 ? 12 DG B "C2'" 1 ATOM 171 C "C1'" . DG B 2 2 ? -9.561 -6.492 -7.952 1.00 83.79 ? 12 DG B "C1'" 1 ATOM 172 N N9 . DG B 2 2 ? -10.735 -5.623 -7.888 1.00 83.00 ? 12 DG B N9 1 ATOM 173 C C8 . DG B 2 2 ? -12.036 -6.025 -7.733 1.00 83.45 ? 12 DG B C8 1 ATOM 174 N N7 . DG B 2 2 ? -12.893 -5.046 -7.738 1.00 83.36 ? 12 DG B N7 1 ATOM 175 C C5 . DG B 2 2 ? -12.114 -3.910 -7.918 1.00 82.18 ? 12 DG B C5 1 ATOM 176 C C6 . DG B 2 2 ? -12.502 -2.549 -8.014 1.00 80.92 ? 12 DG B C6 1 ATOM 177 O O6 . DG B 2 2 ? -13.642 -2.072 -7.944 1.00 79.64 ? 12 DG B O6 1 ATOM 178 N N1 . DG B 2 2 ? -11.405 -1.713 -8.195 1.00 81.03 ? 12 DG B N1 1 ATOM 179 C C2 . DG B 2 2 ? -10.096 -2.143 -8.277 1.00 81.84 ? 12 DG B C2 1 ATOM 180 N N2 . DG B 2 2 ? -9.155 -1.199 -8.457 1.00 81.60 ? 12 DG B N2 1 ATOM 181 N N3 . DG B 2 2 ? -9.726 -3.417 -8.185 1.00 82.25 ? 12 DG B N3 1 ATOM 182 C C4 . DG B 2 2 ? -10.782 -4.250 -8.010 1.00 82.36 ? 12 DG B C4 1 ATOM 183 P P . DC B 2 3 ? -6.939 -8.550 -5.624 1.00 83.83 ? 13 DC B P 1 ATOM 184 O OP1 . DC B 2 3 ? -5.641 -9.274 -5.531 1.00 81.67 ? 13 DC B OP1 1 ATOM 185 O OP2 . DC B 2 3 ? -8.163 -9.144 -5.032 1.00 84.17 ? 13 DC B OP2 1 ATOM 186 O "O5'" . DC B 2 3 ? -6.792 -7.096 -4.988 1.00 85.06 ? 13 DC B "O5'" 1 ATOM 187 C "C5'" . DC B 2 3 ? -5.590 -6.343 -5.237 1.00 85.93 ? 13 DC B "C5'" 1 ATOM 188 C "C4'" . DC B 2 3 ? -5.733 -4.925 -4.726 1.00 83.78 ? 13 DC B "C4'" 1 ATOM 189 O "O4'" . DC B 2 3 ? -7.031 -4.408 -5.131 1.00 82.07 ? 13 DC B "O4'" 1 ATOM 190 C "C3'" . DC B 2 3 ? -5.695 -4.834 -3.200 1.00 84.48 ? 13 DC B "C3'" 1 ATOM 191 O "O3'" . DC B 2 3 ? -4.845 -3.753 -2.807 1.00 86.48 ? 13 DC B "O3'" 1 ATOM 192 C "C2'" . DC B 2 3 ? -7.165 -4.628 -2.823 1.00 81.90 ? 13 DC B "C2'" 1 ATOM 193 C "C1'" . DC B 2 3 ? -7.577 -3.756 -4.003 1.00 78.99 ? 13 DC B "C1'" 1 ATOM 194 N N1 . DC B 2 3 ? -9.016 -3.497 -4.225 1.00 73.47 ? 13 DC B N1 1 ATOM 195 C C2 . DC B 2 3 ? -9.372 -2.292 -4.840 1.00 70.80 ? 13 DC B C2 1 ATOM 196 O O2 . DC B 2 3 ? -8.481 -1.504 -5.160 1.00 68.39 ? 13 DC B O2 1 ATOM 197 N N3 . DC B 2 3 ? -10.681 -2.018 -5.068 1.00 70.27 ? 13 DC B N3 1 ATOM 198 C C4 . DC B 2 3 ? -11.613 -2.906 -4.700 1.00 71.10 ? 13 DC B C4 1 ATOM 199 N N4 . DC B 2 3 ? -12.889 -2.608 -4.954 1.00 68.48 ? 13 DC B N4 1 ATOM 200 C C5 . DC B 2 3 ? -11.272 -4.151 -4.075 1.00 72.52 ? 13 DC B C5 1 ATOM 201 C C6 . DC B 2 3 ? -9.968 -4.404 -3.862 1.00 73.60 ? 13 DC B C6 1 ATOM 202 P P . DA B 2 4 ? -3.267 -3.861 -3.085 1.00 88.64 ? 14 DA B P 1 ATOM 203 O OP1 . DA B 2 4 ? -3.052 -3.909 -4.556 1.00 86.20 ? 14 DA B OP1 1 ATOM 204 O OP2 . DA B 2 4 ? -2.742 -4.955 -2.235 1.00 88.73 ? 14 DA B OP2 1 ATOM 205 O "O5'" . DA B 2 4 ? -2.700 -2.494 -2.465 1.00 86.10 ? 14 DA B "O5'" 1 ATOM 206 C "C5'" . DA B 2 4 ? -2.880 -1.242 -3.126 1.00 83.14 ? 14 DA B "C5'" 1 ATOM 207 C "C4'" . DA B 2 4 ? -3.434 -0.231 -2.144 1.00 80.11 ? 14 DA B "C4'" 1 ATOM 208 O "O4'" . DA B 2 4 ? -4.888 -0.316 -2.221 1.00 81.04 ? 14 DA B "O4'" 1 ATOM 209 C "C3'" . DA B 2 4 ? -3.041 -0.381 -0.658 1.00 79.77 ? 14 DA B "C3'" 1 ATOM 210 O "O3'" . DA B 2 4 ? -3.227 0.916 -0.114 1.00 77.56 ? 14 DA B "O3'" 1 ATOM 211 C "C2'" . DA B 2 4 ? -4.224 -1.196 -0.172 1.00 80.46 ? 14 DA B "C2'" 1 ATOM 212 C "C1'" . DA B 2 4 ? -5.346 -0.477 -0.893 1.00 80.95 ? 14 DA B "C1'" 1 ATOM 213 N N9 . DA B 2 4 ? -6.723 -0.975 -0.868 1.00 79.94 ? 14 DA B N9 1 ATOM 214 C C8 . DA B 2 4 ? -7.200 -2.211 -0.505 1.00 79.99 ? 14 DA B C8 1 ATOM 215 N N7 . DA B 2 4 ? -8.508 -2.324 -0.610 1.00 78.21 ? 14 DA B N7 1 ATOM 216 C C5 . DA B 2 4 ? -8.905 -1.076 -1.069 1.00 77.53 ? 14 DA B C5 1 ATOM 217 C C6 . DA B 2 4 ? -10.161 -0.539 -1.396 1.00 76.60 ? 14 DA B C6 1 ATOM 218 N N6 . DA B 2 4 ? -11.284 -1.252 -1.300 1.00 75.80 ? 14 DA B N6 1 ATOM 219 N N1 . DA B 2 4 ? -10.221 0.741 -1.837 1.00 75.54 ? 14 DA B N1 1 ATOM 220 C C2 . DA B 2 4 ? -9.085 1.438 -1.940 1.00 76.38 ? 14 DA B C2 1 ATOM 221 N N3 . DA B 2 4 ? -7.843 1.031 -1.666 1.00 77.31 ? 14 DA B N3 1 ATOM 222 C C4 . DA B 2 4 ? -7.822 -0.237 -1.229 1.00 77.91 ? 14 DA B C4 1 ATOM 223 P P . DC B 2 5 ? -2.385 1.499 1.132 1.00 76.41 ? 15 DC B P 1 ATOM 224 O OP1 . DC B 2 5 ? -0.942 1.306 0.842 1.00 77.06 ? 15 DC B OP1 1 ATOM 225 O OP2 . DC B 2 5 ? -2.949 1.016 2.418 1.00 73.07 ? 15 DC B OP2 1 ATOM 226 O "O5'" . DC B 2 5 ? -2.830 3.031 1.046 1.00 74.22 ? 15 DC B "O5'" 1 ATOM 227 C "C5'" . DC B 2 5 ? -3.987 3.283 0.208 1.00 70.70 ? 15 DC B "C5'" 1 ATOM 228 C "C4'" . DC B 2 5 ? -5.214 3.848 0.924 1.00 68.16 ? 15 DC B "C4'" 1 ATOM 229 O "O4'" . DC B 2 5 ? -6.356 2.946 0.860 1.00 66.31 ? 15 DC B "O4'" 1 ATOM 230 C "C3'" . DC B 2 5 ? -5.038 4.238 2.389 1.00 66.60 ? 15 DC B "C3'" 1 ATOM 231 O "O3'" . DC B 2 5 ? -4.834 5.684 2.418 1.00 65.86 ? 15 DC B "O3'" 1 ATOM 232 C "C2'" . DC B 2 5 ? -6.311 3.703 3.085 1.00 64.88 ? 15 DC B "C2'" 1 ATOM 233 C "C1'" . DC B 2 5 ? -7.216 3.161 1.972 1.00 65.50 ? 15 DC B "C1'" 1 ATOM 234 N N1 . DC B 2 5 ? -7.927 1.833 2.156 1.00 65.71 ? 15 DC B N1 1 ATOM 235 C C2 . DC B 2 5 ? -9.331 1.669 2.009 1.00 65.61 ? 15 DC B C2 1 ATOM 236 O O2 . DC B 2 5 ? -10.075 2.646 1.818 1.00 65.32 ? 15 DC B O2 1 ATOM 237 N N3 . DC B 2 5 ? -9.862 0.410 2.110 1.00 63.55 ? 15 DC B N3 1 ATOM 238 C C4 . DC B 2 5 ? -9.071 -0.647 2.337 1.00 61.99 ? 15 DC B C4 1 ATOM 239 N N4 . DC B 2 5 ? -9.620 -1.847 2.468 1.00 59.59 ? 15 DC B N4 1 ATOM 240 C C5 . DC B 2 5 ? -7.664 -0.516 2.468 1.00 63.53 ? 15 DC B C5 1 ATOM 241 C C6 . DC B 2 5 ? -7.149 0.716 2.343 1.00 66.29 ? 15 DC B C6 1 ATOM 242 P P . DG B 2 6 ? -4.567 6.463 3.808 1.00 69.20 ? 16 DG B P 1 ATOM 243 O OP1 . DG B 2 6 ? -3.768 7.688 3.538 1.00 67.67 ? 16 DG B OP1 1 ATOM 244 O OP2 . DG B 2 6 ? -4.089 5.484 4.820 1.00 70.29 ? 16 DG B OP2 1 ATOM 245 O "O5'" . DG B 2 6 ? -6.028 6.904 4.278 1.00 67.76 ? 16 DG B "O5'" 1 ATOM 246 C "C5'" . DG B 2 6 ? -7.069 7.272 3.368 1.00 63.50 ? 16 DG B "C5'" 1 ATOM 247 C "C4'" . DG B 2 6 ? -8.327 7.249 4.215 1.00 60.84 ? 16 DG B "C4'" 1 ATOM 248 O "O4'" . DG B 2 6 ? -8.820 5.890 4.232 1.00 56.38 ? 16 DG B "O4'" 1 ATOM 249 C "C3'" . DG B 2 6 ? -8.115 7.642 5.690 1.00 59.67 ? 16 DG B "C3'" 1 ATOM 250 O "O3'" . DG B 2 6 ? -9.165 8.576 6.148 1.00 61.04 ? 16 DG B "O3'" 1 ATOM 251 C "C2'" . DG B 2 6 ? -8.097 6.282 6.414 1.00 55.87 ? 16 DG B "C2'" 1 ATOM 252 C "C1'" . DG B 2 6 ? -9.108 5.518 5.573 1.00 55.18 ? 16 DG B "C1'" 1 ATOM 253 N N9 . DG B 2 6 ? -8.988 4.068 5.546 1.00 54.57 ? 16 DG B N9 1 ATOM 254 C C8 . DG B 2 6 ? -7.827 3.331 5.608 1.00 54.95 ? 16 DG B C8 1 ATOM 255 N N7 . DG B 2 6 ? -8.008 2.051 5.485 1.00 50.97 ? 16 DG B N7 1 ATOM 256 C C5 . DG B 2 6 ? -9.358 1.926 5.323 1.00 48.57 ? 16 DG B C5 1 ATOM 257 C C6 . DG B 2 6 ? -10.098 0.750 5.188 1.00 49.07 ? 16 DG B C6 1 ATOM 258 O O6 . DG B 2 6 ? -9.674 -0.426 5.147 1.00 48.61 ? 16 DG B O6 1 ATOM 259 N N1 . DG B 2 6 ? -11.467 1.022 5.060 1.00 46.72 ? 16 DG B N1 1 ATOM 260 C C2 . DG B 2 6 ? -12.003 2.298 5.080 1.00 45.59 ? 16 DG B C2 1 ATOM 261 N N2 . DG B 2 6 ? -13.324 2.401 4.961 1.00 47.17 ? 16 DG B N2 1 ATOM 262 N N3 . DG B 2 6 ? -11.307 3.400 5.229 1.00 44.19 ? 16 DG B N3 1 ATOM 263 C C4 . DG B 2 6 ? -9.993 3.144 5.344 1.00 50.16 ? 16 DG B C4 1 ATOM 264 P P . DC B 2 7 ? -9.294 8.959 7.721 1.00 63.39 ? 17 DC B P 1 ATOM 265 O OP1 . DC B 2 7 ? -9.265 10.443 7.831 1.00 63.03 ? 17 DC B OP1 1 ATOM 266 O OP2 . DC B 2 7 ? -8.263 8.199 8.497 1.00 61.68 ? 17 DC B OP2 1 ATOM 267 O "O5'" . DC B 2 7 ? -10.735 8.365 8.128 1.00 61.25 ? 17 DC B "O5'" 1 ATOM 268 C "C5'" . DC B 2 7 ? -11.953 8.900 7.601 1.00 62.78 ? 17 DC B "C5'" 1 ATOM 269 C "C4'" . DC B 2 7 ? -13.077 8.027 8.125 1.00 64.35 ? 17 DC B "C4'" 1 ATOM 270 O "O4'" . DC B 2 7 ? -12.676 6.667 7.845 1.00 63.14 ? 17 DC B "O4'" 1 ATOM 271 C "C3'" . DC B 2 7 ? -13.322 8.078 9.642 1.00 66.55 ? 17 DC B "C3'" 1 ATOM 272 O "O3'" . DC B 2 7 ? -14.743 8.258 9.974 1.00 67.40 ? 17 DC B "O3'" 1 ATOM 273 C "C2'" . DC B 2 7 ? -12.733 6.758 10.167 1.00 64.62 ? 17 DC B "C2'" 1 ATOM 274 C "C1'" . DC B 2 7 ? -12.921 5.843 8.957 1.00 63.39 ? 17 DC B "C1'" 1 ATOM 275 N N1 . DC B 2 7 ? -11.960 4.709 8.835 1.00 62.31 ? 17 DC B N1 1 ATOM 276 C C2 . DC B 2 7 ? -12.386 3.485 8.332 1.00 59.95 ? 17 DC B C2 1 ATOM 277 O O2 . DC B 2 7 ? -13.554 3.346 8.003 1.00 59.58 ? 17 DC B O2 1 ATOM 278 N N3 . DC B 2 7 ? -11.504 2.480 8.221 1.00 59.22 ? 17 DC B N3 1 ATOM 279 C C4 . DC B 2 7 ? -10.240 2.657 8.582 1.00 61.77 ? 17 DC B C4 1 ATOM 280 N N4 . DC B 2 7 ? -9.404 1.627 8.444 1.00 63.19 ? 17 DC B N4 1 ATOM 281 C C5 . DC B 2 7 ? -9.757 3.899 9.081 1.00 62.32 ? 17 DC B C5 1 ATOM 282 C C6 . DC B 2 7 ? -10.650 4.887 9.179 1.00 64.04 ? 17 DC B C6 1 HETATM 283 CO CO . NCO C 3 . ? -9.654 6.723 -1.499 0.50 48.20 ? 8 NCO A CO 1 HETATM 284 N N1 . NCO C 3 . ? -11.259 7.121 -0.409 0.50 44.66 ? 8 NCO A N1 1 HETATM 285 N N2 . NCO C 3 . ? -8.754 6.119 0.173 0.50 44.33 ? 8 NCO A N2 1 HETATM 286 N N3 . NCO C 3 . ? -8.042 6.326 -2.586 0.50 43.22 ? 8 NCO A N3 1 HETATM 287 N N4 . NCO C 3 . ? -10.536 7.283 -3.182 0.50 43.30 ? 8 NCO A N4 1 HETATM 288 N N5 . NCO C 3 . ? -9.000 8.563 -1.160 0.50 43.56 ? 8 NCO A N5 1 HETATM 289 N N6 . NCO C 3 . ? -10.338 4.886 -1.836 0.50 44.35 ? 8 NCO A N6 1 HETATM 290 O O . HOH D 4 . ? -7.185 4.635 -8.690 1.00 56.94 ? 9 HOH A O 1 HETATM 291 O O . HOH D 4 . ? -13.660 9.944 -1.303 1.00 38.46 ? 10 HOH A O 1 HETATM 292 O O . HOH D 4 . ? -9.483 8.058 -13.002 1.00 30.81 ? 11 HOH A O 1 HETATM 293 O O . HOH E 4 . ? -3.060 1.227 5.123 1.00 39.96 ? 1 HOH B O 1 HETATM 294 O O . HOH E 4 . ? -13.170 -11.933 -13.148 1.00 54.19 ? 2 HOH B O 1 HETATM 295 O O . HOH E 4 . ? -5.169 -5.171 0.000 0.50 55.72 ? 4 HOH B O 1 HETATM 296 O O . HOH E 4 . ? -8.627 -5.422 -0.611 1.00 44.04 ? 6 HOH B O 1 HETATM 297 O O . HOH E 4 . ? -1.650 6.816 5.052 1.00 73.10 ? 7 HOH B O 1 HETATM 298 O O . HOH E 4 . ? -13.219 -10.217 -6.094 1.00 47.70 ? 8 HOH B O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 XTR 4 4 4 XTR XTR A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DG 7 7 7 DG DG A . n B 2 1 DC 1 11 11 DC DC B . n B 2 2 DG 2 12 12 DG DG B . n B 2 3 DC 3 13 13 DC DC B . n B 2 4 DA 4 14 14 DA DA B . n B 2 5 DC 5 15 15 DC DC B . n B 2 6 DG 6 16 16 DG DG B . n B 2 7 DC 7 17 17 DC DC B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NCO 1 8 1 NCO NCO A . D 4 HOH 1 9 9 HOH HOH A . D 4 HOH 2 10 3 HOH HOH A . D 4 HOH 3 11 5 HOH HOH A . E 4 HOH 1 1 1 HOH HOH B . E 4 HOH 2 2 2 HOH HOH B . E 4 HOH 3 4 4 HOH HOH B . E 4 HOH 4 6 6 HOH HOH B . E 4 HOH 5 7 7 HOH HOH B . E 4 HOH 6 8 8 HOH HOH B . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id XTR _pdbx_struct_mod_residue.label_seq_id 4 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id XTR _pdbx_struct_mod_residue.auth_seq_id 4 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DT _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 640 ? 1 MORE -3 ? 1 'SSA (A^2)' 3020 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 4 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-08-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' diffrn_source 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0072 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 DC _pdbx_validate_rmsd_bond.auth_seq_id_1 6 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 DC _pdbx_validate_rmsd_bond.auth_seq_id_2 6 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.382 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.037 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.64 108.30 3.34 0.30 N 2 1 "C1'" A DG 5 ? ? "O4'" A DG 5 ? ? "C4'" A DG 5 ? ? 103.90 110.10 -6.20 1.00 N 3 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.67 108.30 2.37 0.30 N 4 1 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 111.06 108.30 2.76 0.30 N 5 1 "O5'" B DG 16 ? ? "C5'" B DG 16 ? ? "C4'" B DG 16 ? ? 104.15 109.40 -5.25 0.80 N 6 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 103.10 108.00 -4.90 0.70 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 HOH O O N N 108 HOH H1 H N N 109 HOH H2 H N N 110 NCO CO CO N N 111 NCO N1 N N N 112 NCO N2 N N N 113 NCO N3 N N N 114 NCO N4 N N N 115 NCO N5 N N N 116 NCO N6 N N N 117 NCO HN11 H N N 118 NCO HN12 H N N 119 NCO HN13 H N N 120 NCO HN21 H N N 121 NCO HN22 H N N 122 NCO HN23 H N N 123 NCO HN31 H N N 124 NCO HN32 H N N 125 NCO HN33 H N N 126 NCO HN41 H N N 127 NCO HN42 H N N 128 NCO HN43 H N N 129 NCO HN51 H N N 130 NCO HN52 H N N 131 NCO HN53 H N N 132 NCO HN61 H N N 133 NCO HN62 H N N 134 NCO HN63 H N N 135 XTR OP3 O N N 136 XTR "C4'" C N R 137 XTR "C7'" C N N 138 XTR "C6'" C N N 139 XTR "C1'" C N S 140 XTR O4 O N N 141 XTR C4 C N N 142 XTR C5 C N N 143 XTR C5M C N N 144 XTR C6 C N N 145 XTR N3 N N N 146 XTR C2 C N N 147 XTR O2 O N N 148 XTR N1 N N N 149 XTR "C2'" C N N 150 XTR "C3'" C N S 151 XTR P P N N 152 XTR OP1 O N N 153 XTR OP2 O N N 154 XTR "O5'" O N N 155 XTR "C5'" C N N 156 XTR "O3'" O N N 157 XTR HOP3 H N N 158 XTR "H4'" H N N 159 XTR "H7'" H N N 160 XTR "H6'" H N N 161 XTR "H1'" H N N 162 XTR H5M H N N 163 XTR H5MA H N N 164 XTR H5MB H N N 165 XTR H6 H N N 166 XTR HN3 H N N 167 XTR "H2'" H N N 168 XTR "H2'A" H N N 169 XTR "H3'" H N N 170 XTR "H5'" H N N 171 XTR "H5'A" H N N 172 XTR "HO3'" H N N 173 XTR HOP2 H N N 174 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 HOH O H1 sing N N 113 HOH O H2 sing N N 114 NCO CO N1 sing N N 115 NCO CO N2 sing N N 116 NCO CO N3 sing N N 117 NCO CO N4 sing N N 118 NCO CO N5 sing N N 119 NCO CO N6 sing N N 120 NCO N1 HN11 sing N N 121 NCO N1 HN12 sing N N 122 NCO N1 HN13 sing N N 123 NCO N2 HN21 sing N N 124 NCO N2 HN22 sing N N 125 NCO N2 HN23 sing N N 126 NCO N3 HN31 sing N N 127 NCO N3 HN32 sing N N 128 NCO N3 HN33 sing N N 129 NCO N4 HN41 sing N N 130 NCO N4 HN42 sing N N 131 NCO N4 HN43 sing N N 132 NCO N5 HN51 sing N N 133 NCO N5 HN52 sing N N 134 NCO N5 HN53 sing N N 135 NCO N6 HN61 sing N N 136 NCO N6 HN62 sing N N 137 NCO N6 HN63 sing N N 138 XTR OP3 HOP3 sing N N 139 XTR "C4'" "C6'" sing N N 140 XTR "C4'" "H4'" sing N N 141 XTR "C7'" "C6'" doub N N 142 XTR "C7'" "H7'" sing N N 143 XTR "C6'" "H6'" sing N N 144 XTR "C1'" "C7'" sing N N 145 XTR "C1'" N1 sing N N 146 XTR "C1'" "H1'" sing N N 147 XTR C4 O4 doub N N 148 XTR C5 C4 sing N N 149 XTR C5 C5M sing N N 150 XTR C5M H5M sing N N 151 XTR C5M H5MA sing N N 152 XTR C5M H5MB sing N N 153 XTR C6 C5 doub N N 154 XTR C6 H6 sing N N 155 XTR N3 C4 sing N N 156 XTR N3 HN3 sing N N 157 XTR C2 N3 sing N N 158 XTR O2 C2 doub N N 159 XTR N1 C6 sing N N 160 XTR N1 C2 sing N N 161 XTR "C2'" "C1'" sing N N 162 XTR "C2'" "C3'" sing N N 163 XTR "C2'" "H2'" sing N N 164 XTR "C2'" "H2'A" sing N N 165 XTR "C3'" "C4'" sing N N 166 XTR "C3'" "H3'" sing N N 167 XTR P OP3 sing N N 168 XTR P OP1 doub N N 169 XTR OP2 P sing N N 170 XTR "O5'" P sing N N 171 XTR "C5'" "C4'" sing N N 172 XTR "C5'" "O5'" sing N N 173 XTR "C5'" "H5'" sing N N 174 XTR "C5'" "H5'A" sing N N 175 XTR "O3'" "C3'" sing N N 176 XTR "O3'" "HO3'" sing N N 177 XTR OP2 HOP2 sing N N 178 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3LLN 'double helix' 3LLN 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 7 1_555 -0.617 -0.381 -0.833 -17.066 -3.615 -1.442 1 A_DG1:DC17_B A 1 ? B 17 ? 19 1 1 A DC 2 1_555 B DG 6 1_555 0.681 -0.335 -0.291 -0.632 -0.609 -3.223 2 A_DC2:DG16_B A 2 ? B 16 ? 19 1 1 A DG 3 1_555 B DC 5 1_555 -0.405 -0.248 0.621 5.743 -12.625 -3.571 3 A_DG3:DC15_B A 3 ? B 15 ? 19 1 1 A XTR 4 1_555 B DA 4 1_555 0.197 -0.218 0.720 -20.529 -26.820 -18.722 4 A_XTR4:DA14_B A 4 ? B 14 ? 20 1 1 A DG 5 1_555 B DC 3 1_555 0.613 -0.061 -0.621 -11.921 -17.781 -1.617 5 A_DG5:DC13_B A 5 ? B 13 ? 19 1 1 A DC 6 1_555 B DG 2 1_555 0.465 -0.097 0.524 4.282 -4.582 1.866 6 A_DC6:DG12_B A 6 ? B 12 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 7 1_555 A DC 2 1_555 B DG 6 1_555 0.715 0.482 2.745 -6.372 -0.443 33.881 0.870 -2.018 2.566 -0.752 10.814 34.460 1 AA_DG1DC2:DG16DC17_BB A 1 ? B 17 ? A 2 ? B 16 ? 1 A DC 2 1_555 B DG 6 1_555 A DG 3 1_555 B DC 5 1_555 -0.277 1.187 3.330 -0.959 4.331 27.346 1.381 0.336 3.480 9.086 2.012 27.697 2 AA_DC2DG3:DC15DG16_BB A 2 ? B 16 ? A 3 ? B 15 ? 1 A DG 3 1_555 B DC 5 1_555 A XTR 4 1_555 B DA 4 1_555 -0.791 -0.545 3.962 -3.667 2.009 42.688 -0.989 0.638 3.985 2.752 5.023 42.882 3 AA_DG3XTR4:DA14DC15_BB A 3 ? B 15 ? A 4 ? B 14 ? 1 A XTR 4 1_555 B DA 4 1_555 A DG 5 1_555 B DC 3 1_555 1.275 1.076 3.419 14.984 5.674 36.986 0.826 0.099 3.761 8.473 -22.376 40.196 4 AA_XTR4DG5:DC13DA14_BB A 4 ? B 14 ? A 5 ? B 13 ? 1 A DG 5 1_555 B DC 3 1_555 A DC 6 1_555 B DG 2 1_555 0.311 -0.201 2.819 -11.663 10.125 24.620 -2.265 -2.768 2.208 21.278 24.511 29.000 5 AA_DG5DC6:DG12DC13_BB A 5 ? B 13 ? A 6 ? B 12 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'COBALT HEXAMMINE(III)' NCO 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3FL6 _pdbx_initial_refinement_model.details 'PDB entry 3FL6 (one biological unit)' #
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