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STRUCTURAL BIOLOGY
COMMUNICATIONS
Volume 67
|
Part 12
|
December 2011
|
Pages 1506–1510
https://doi.org/10.1107/S1744309111046616
Open
access
ISSN: 2053-230X
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STRUCTURAL BIOLOGY
COMMUNICATIONS
Volume 67
|
Part 12
|
December 2011
|
Pages 1506–1510
https://doi.org/10.1107/S1744309111046616
Open
access
ISSN: 2053-230X
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data_3T8P # _entry.id 3T8P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3T8P pdb_00003t8p 10.2210/pdb3t8p/pdb NDB NA1266 ? ? RCSB RCSB067177 ? ? WWPDB D_1000067177 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3T8P _pdbx_database_status.recvd_initial_deposition_date 2011-08-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mandal, P.K.' 1 'Venkadesh, S.' 2 'Gautham, N.' 3 # _citation.id primary _citation.title 'Structure of d(CGGGTACCCG)(4) as a four-way Holliday junction' _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 67 _citation.page_first 1506 _citation.page_last 1510 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22139153 _citation.pdbx_database_id_DOI 10.1107/S1744309111046616 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mandal, P.K.' 1 ? primary 'Venkadesh, S.' 2 ? primary 'Gautham, N.' 3 ? # _cell.entry_id 3T8P _cell.length_a 65.289 _cell.length_b 23.597 _cell.length_c 37.124 _cell.angle_alpha 90.00 _cell.angle_beta 111.30 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3T8P _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*GP*GP*TP*AP*CP*CP*CP*G)-3') ; 3045.993 2 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 water nat water 18.015 18 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DG)(DG)(DT)(DA)(DC)(DC)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGGGTACCCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DA n 1 7 DC n 1 8 DC n 1 9 DC n 1 10 DG n # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3T8P _struct_ref.pdbx_db_accession 3T8P _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3T8P A 1 ? 10 ? 3T8P 1 ? 10 ? 1 10 2 1 3T8P B 1 ? 10 ? 3T8P 11 ? 20 ? 11 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.entry_id 3T8P _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_percent_sol 43.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 300 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;1mM DNA, 40mM sodium cacodylate, 85mM Calcium chloride, equilibrated against 30% methyl pentane diol , pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 300K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2008-03-09 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Graphite _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'BRUKER AXS MICROSTAR' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3T8P _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 34.59 _reflns.d_resolution_high 2.35 _reflns.number_obs 2236 _reflns.number_all ? _reflns.percent_possible_obs 96.53 _reflns.pdbx_Rmerge_I_obs 0.115 _reflns.pdbx_Rsym_value 0.0885 _reflns.pdbx_netI_over_sigmaI 3.7 _reflns.B_iso_Wilson_estimate 53.13 _reflns.pdbx_redundancy 2.83 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.35 _reflns_shell.d_res_low 2.43 _reflns_shell.percent_possible_all 96.4 _reflns_shell.Rmerge_I_obs 0.295 _reflns_shell.pdbx_Rsym_value 0.249 _reflns_shell.meanI_over_sigI_obs 1.1 _reflns_shell.pdbx_redundancy 3.29 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2236 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3T8P _refine.ls_number_reflns_obs 2115 _refine.ls_number_reflns_all 2263 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.59 _refine.ls_d_res_high 2.35 _refine.ls_percent_reflns_obs 96.53 _refine.ls_R_factor_obs 0.23759 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23546 _refine.ls_R_factor_R_free 0.27839 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 112 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.942 _refine.correlation_coeff_Fo_to_Fc_free 0.904 _refine.B_iso_mean 31.477 _refine.aniso_B[1][1] 0.31 _refine.aniso_B[2][2] 0.21 _refine.aniso_B[3][3] 0.07 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.04 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1NT8' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.301 _refine.overall_SU_ML 0.169 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.570 _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 423 _refine_hist.d_res_high 2.35 _refine_hist.d_res_low 34.59 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.012 0.021 ? 452 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.980 3.000 ? 694 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.007 0.020 ? 210 ? 'X-RAY DIFFRACTION' r_nbd_refined 0.255 0.200 ? 106 ? 'X-RAY DIFFRACTION' r_nbtor_refined 0.330 0.200 ? 255 ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined 0.235 0.200 ? 13 ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined 0.220 0.200 ? 32 ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined 0.289 0.200 ? 6 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.352 _refine_ls_shell.d_res_low 2.413 _refine_ls_shell.number_reflns_R_work 160 _refine_ls_shell.R_factor_R_work 0.380 _refine_ls_shell.percent_reflns_obs 97.66 _refine_ls_shell.R_factor_R_free 0.248 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 7 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 160 _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3T8P _struct.title 'Crystal structure of d(CGGGTACCCG)4 as a four-way Holliday junction' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3T8P _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA four-way Holliday Junction, Recombination, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id CA _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE CA B 1' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id DG _struct_site_gen.label_asym_id B _struct_site_gen.label_seq_id 3 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id DG _struct_site_gen.auth_asym_id B _struct_site_gen.auth_seq_id 13 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _database_PDB_matrix.entry_id 3T8P _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3T8P _atom_sites.fract_transf_matrix[1][1] 0.015317 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005972 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.042378 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028912 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 10.420 -1.964 1.971 1.00 29.03 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? 10.090 -3.205 1.376 1.00 30.79 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 10.891 -4.357 1.992 1.00 32.63 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 11.733 -3.969 3.113 1.00 32.94 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 10.057 -5.483 2.580 1.00 32.89 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 10.787 -6.667 2.502 1.00 35.93 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 9.966 -5.087 4.030 1.00 30.58 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 11.412 -4.720 4.267 1.00 29.15 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 11.590 -3.879 5.492 1.00 28.35 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? 11.406 -4.418 6.776 1.00 29.80 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? 11.101 -5.624 6.926 1.00 32.62 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? 11.564 -3.591 7.839 1.00 27.91 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? 11.885 -2.314 7.671 1.00 27.83 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? 12.036 -1.551 8.740 1.00 25.85 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? 12.070 -1.747 6.384 1.00 28.93 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? 11.905 -2.568 5.345 1.00 28.62 ? 1 DC A C6 1 ATOM 17 P P . DG A 1 2 ? 10.100 -8.064 2.134 1.00 38.64 ? 2 DG A P 1 ATOM 18 O OP1 . DG A 1 2 ? 10.778 -9.013 3.071 1.00 39.41 ? 2 DG A OP1 1 ATOM 19 O OP2 . DG A 1 2 ? 10.171 -8.247 0.660 1.00 37.15 ? 2 DG A OP2 1 ATOM 20 O "O5'" . DG A 1 2 ? 8.549 -7.958 2.474 1.00 34.17 ? 2 DG A "O5'" 1 ATOM 21 C "C5'" . DG A 1 2 ? 7.978 -8.939 3.323 1.00 35.72 ? 2 DG A "C5'" 1 ATOM 22 C "C4'" . DG A 1 2 ? 6.692 -8.406 3.948 1.00 37.91 ? 2 DG A "C4'" 1 ATOM 23 O "O4'" . DG A 1 2 ? 6.906 -7.155 4.661 1.00 36.59 ? 2 DG A "O4'" 1 ATOM 24 C "C3'" . DG A 1 2 ? 5.545 -8.161 2.967 1.00 38.30 ? 2 DG A "C3'" 1 ATOM 25 O "O3'" . DG A 1 2 ? 4.391 -8.660 3.573 1.00 39.26 ? 2 DG A "O3'" 1 ATOM 26 C "C2'" . DG A 1 2 ? 5.481 -6.646 2.871 1.00 37.18 ? 2 DG A "C2'" 1 ATOM 27 C "C1'" . DG A 1 2 ? 5.904 -6.255 4.296 1.00 36.13 ? 2 DG A "C1'" 1 ATOM 28 N N9 . DG A 1 2 ? 6.538 -4.963 4.384 1.00 33.77 ? 2 DG A N9 1 ATOM 29 C C8 . DG A 1 2 ? 6.736 -4.124 3.333 1.00 35.13 ? 2 DG A C8 1 ATOM 30 N N7 . DG A 1 2 ? 7.323 -3.011 3.656 1.00 36.86 ? 2 DG A N7 1 ATOM 31 C C5 . DG A 1 2 ? 7.516 -3.126 5.010 1.00 34.39 ? 2 DG A C5 1 ATOM 32 C C6 . DG A 1 2 ? 8.130 -2.208 5.864 1.00 33.05 ? 2 DG A C6 1 ATOM 33 O O6 . DG A 1 2 ? 8.591 -1.117 5.534 1.00 31.02 ? 2 DG A O6 1 ATOM 34 N N1 . DG A 1 2 ? 8.139 -2.658 7.196 1.00 34.36 ? 2 DG A N1 1 ATOM 35 C C2 . DG A 1 2 ? 7.621 -3.876 7.618 1.00 34.70 ? 2 DG A C2 1 ATOM 36 N N2 . DG A 1 2 ? 7.733 -4.129 8.949 1.00 31.78 ? 2 DG A N2 1 ATOM 37 N N3 . DG A 1 2 ? 7.036 -4.761 6.785 1.00 34.64 ? 2 DG A N3 1 ATOM 38 C C4 . DG A 1 2 ? 7.028 -4.323 5.494 1.00 34.99 ? 2 DG A C4 1 ATOM 39 P P . DG A 1 3 ? 3.263 -9.337 2.708 1.00 38.80 ? 3 DG A P 1 ATOM 40 O OP1 . DG A 1 3 ? 3.895 -10.450 1.998 1.00 42.13 ? 3 DG A OP1 1 ATOM 41 O OP2 . DG A 1 3 ? 2.565 -8.279 1.970 1.00 40.65 ? 3 DG A OP2 1 ATOM 42 O "O5'" . DG A 1 3 ? 2.274 -9.967 3.768 1.00 40.10 ? 3 DG A "O5'" 1 ATOM 43 C "C5'" . DG A 1 3 ? 2.788 -10.367 5.058 1.00 39.08 ? 3 DG A "C5'" 1 ATOM 44 C "C4'" . DG A 1 3 ? 2.134 -9.542 6.169 1.00 36.96 ? 3 DG A "C4'" 1 ATOM 45 O "O4'" . DG A 1 3 ? 2.764 -8.244 6.300 1.00 33.78 ? 3 DG A "O4'" 1 ATOM 46 C "C3'" . DG A 1 3 ? 0.647 -9.249 5.980 1.00 36.21 ? 3 DG A "C3'" 1 ATOM 47 O "O3'" . DG A 1 3 ? -0.031 -9.304 7.234 1.00 39.00 ? 3 DG A "O3'" 1 ATOM 48 C "C2'" . DG A 1 3 ? 0.688 -7.830 5.451 1.00 33.59 ? 3 DG A "C2'" 1 ATOM 49 C "C1'" . DG A 1 3 ? 1.752 -7.287 6.376 1.00 30.20 ? 3 DG A "C1'" 1 ATOM 50 N N9 . DG A 1 3 ? 2.306 -6.014 5.973 1.00 28.88 ? 3 DG A N9 1 ATOM 51 C C8 . DG A 1 3 ? 2.327 -5.492 4.704 1.00 28.21 ? 3 DG A C8 1 ATOM 52 N N7 . DG A 1 3 ? 2.878 -4.330 4.637 1.00 27.85 ? 3 DG A N7 1 ATOM 53 C C5 . DG A 1 3 ? 3.242 -4.057 5.948 1.00 27.49 ? 3 DG A C5 1 ATOM 54 C C6 . DG A 1 3 ? 3.878 -2.926 6.490 1.00 28.53 ? 3 DG A C6 1 ATOM 55 O O6 . DG A 1 3 ? 4.266 -1.913 5.891 1.00 30.56 ? 3 DG A O6 1 ATOM 56 N N1 . DG A 1 3 ? 4.063 -3.042 7.863 1.00 28.03 ? 3 DG A N1 1 ATOM 57 C C2 . DG A 1 3 ? 3.671 -4.113 8.622 1.00 28.64 ? 3 DG A C2 1 ATOM 58 N N2 . DG A 1 3 ? 3.934 -4.039 9.924 1.00 30.72 ? 3 DG A N2 1 ATOM 59 N N3 . DG A 1 3 ? 3.057 -5.173 8.135 1.00 29.19 ? 3 DG A N3 1 ATOM 60 C C4 . DG A 1 3 ? 2.885 -5.079 6.790 1.00 27.70 ? 3 DG A C4 1 ATOM 61 P P . DG A 1 4 ? -0.586 -10.683 7.799 1.00 40.34 ? 4 DG A P 1 ATOM 62 O OP1 . DG A 1 4 ? 0.526 -11.647 7.725 1.00 42.58 ? 4 DG A OP1 1 ATOM 63 O OP2 . DG A 1 4 ? -1.864 -10.939 7.120 1.00 40.22 ? 4 DG A OP2 1 ATOM 64 O "O5'" . DG A 1 4 ? -0.859 -10.401 9.337 1.00 38.89 ? 4 DG A "O5'" 1 ATOM 65 C "C5'" . DG A 1 4 ? 0.272 -10.324 10.196 1.00 38.77 ? 4 DG A "C5'" 1 ATOM 66 C "C4'" . DG A 1 4 ? 0.072 -9.352 11.351 1.00 36.34 ? 4 DG A "C4'" 1 ATOM 67 O "O4'" . DG A 1 4 ? 0.149 -7.959 10.971 1.00 36.24 ? 4 DG A "O4'" 1 ATOM 68 C "C3'" . DG A 1 4 ? -1.255 -9.368 12.047 1.00 37.65 ? 4 DG A "C3'" 1 ATOM 69 O "O3'" . DG A 1 4 ? -0.885 -8.766 13.265 1.00 40.11 ? 4 DG A "O3'" 1 ATOM 70 C "C2'" . DG A 1 4 ? -2.132 -8.466 11.171 1.00 35.19 ? 4 DG A "C2'" 1 ATOM 71 C "C1'" . DG A 1 4 ? -1.134 -7.363 10.847 1.00 33.63 ? 4 DG A "C1'" 1 ATOM 72 N N9 . DG A 1 4 ? -1.150 -6.716 9.527 1.00 32.75 ? 4 DG A N9 1 ATOM 73 C C8 . DG A 1 4 ? -1.589 -7.208 8.321 1.00 31.02 ? 4 DG A C8 1 ATOM 74 N N7 . DG A 1 4 ? -1.442 -6.385 7.335 1.00 28.15 ? 4 DG A N7 1 ATOM 75 C C5 . DG A 1 4 ? -0.875 -5.261 7.907 1.00 30.59 ? 4 DG A C5 1 ATOM 76 C C6 . DG A 1 4 ? -0.475 -4.017 7.329 1.00 30.30 ? 4 DG A C6 1 ATOM 77 O O6 . DG A 1 4 ? -0.542 -3.640 6.151 1.00 30.83 ? 4 DG A O6 1 ATOM 78 N N1 . DG A 1 4 ? 0.046 -3.150 8.271 1.00 28.26 ? 4 DG A N1 1 ATOM 79 C C2 . DG A 1 4 ? 0.182 -3.430 9.601 1.00 29.30 ? 4 DG A C2 1 ATOM 80 N N2 . DG A 1 4 ? 0.722 -2.463 10.332 1.00 29.06 ? 4 DG A N2 1 ATOM 81 N N3 . DG A 1 4 ? -0.160 -4.570 10.164 1.00 31.16 ? 4 DG A N3 1 ATOM 82 C C4 . DG A 1 4 ? -0.687 -5.444 9.261 1.00 31.52 ? 4 DG A C4 1 ATOM 83 P P . DT A 1 5 ? -1.806 -8.858 14.542 1.00 40.55 ? 5 DT A P 1 ATOM 84 O OP1 . DT A 1 5 ? -0.900 -9.443 15.553 1.00 40.69 ? 5 DT A OP1 1 ATOM 85 O OP2 . DT A 1 5 ? -3.070 -9.521 14.151 1.00 36.52 ? 5 DT A OP2 1 ATOM 86 O "O5'" . DT A 1 5 ? -2.149 -7.328 14.911 1.00 36.15 ? 5 DT A "O5'" 1 ATOM 87 C "C5'" . DT A 1 5 ? -1.121 -6.343 14.872 1.00 33.36 ? 5 DT A "C5'" 1 ATOM 88 C "C4'" . DT A 1 5 ? -1.670 -4.938 14.679 1.00 32.55 ? 5 DT A "C4'" 1 ATOM 89 O "O4'" . DT A 1 5 ? -1.727 -4.589 13.272 1.00 30.33 ? 5 DT A "O4'" 1 ATOM 90 C "C3'" . DT A 1 5 ? -3.071 -4.706 15.254 1.00 33.05 ? 5 DT A "C3'" 1 ATOM 91 O "O3'" . DT A 1 5 ? -3.092 -3.447 15.884 1.00 32.96 ? 5 DT A "O3'" 1 ATOM 92 C "C2'" . DT A 1 5 ? -3.988 -4.675 14.028 1.00 32.47 ? 5 DT A "C2'" 1 ATOM 93 C "C1'" . DT A 1 5 ? -3.007 -4.042 13.048 1.00 31.39 ? 5 DT A "C1'" 1 ATOM 94 N N1 . DT A 1 5 ? -3.354 -4.085 11.614 1.00 31.30 ? 5 DT A N1 1 ATOM 95 C C2 . DT A 1 5 ? -2.806 -3.093 10.846 1.00 29.69 ? 5 DT A C2 1 ATOM 96 O O2 . DT A 1 5 ? -2.065 -2.235 11.297 1.00 28.80 ? 5 DT A O2 1 ATOM 97 N N3 . DT A 1 5 ? -3.159 -3.157 9.532 1.00 28.65 ? 5 DT A N3 1 ATOM 98 C C4 . DT A 1 5 ? -3.963 -4.065 8.901 1.00 27.25 ? 5 DT A C4 1 ATOM 99 O O4 . DT A 1 5 ? -4.169 -3.988 7.691 1.00 26.79 ? 5 DT A O4 1 ATOM 100 C C5 . DT A 1 5 ? -4.511 -5.075 9.765 1.00 28.72 ? 5 DT A C5 1 ATOM 101 C C7 . DT A 1 5 ? -5.426 -6.147 9.223 1.00 29.14 ? 5 DT A C7 1 ATOM 102 C C6 . DT A 1 5 ? -4.187 -5.039 11.067 1.00 29.66 ? 5 DT A C6 1 ATOM 103 P P . DA A 1 6 ? -3.233 -3.268 17.456 1.00 29.36 ? 6 DA A P 1 ATOM 104 O OP1 . DA A 1 6 ? -1.986 -3.792 18.004 1.00 31.53 ? 6 DA A OP1 1 ATOM 105 O OP2 . DA A 1 6 ? -4.557 -3.729 17.861 1.00 26.03 ? 6 DA A OP2 1 ATOM 106 O "O5'" . DA A 1 6 ? -3.240 -1.685 17.598 1.00 28.50 ? 6 DA A "O5'" 1 ATOM 107 C "C5'" . DA A 1 6 ? -2.231 -0.882 17.064 1.00 25.66 ? 6 DA A "C5'" 1 ATOM 108 C "C4'" . DA A 1 6 ? -2.794 0.198 16.157 1.00 24.89 ? 6 DA A "C4'" 1 ATOM 109 O "O4'" . DA A 1 6 ? -3.256 -0.306 14.898 1.00 24.84 ? 6 DA A "O4'" 1 ATOM 110 C "C3'" . DA A 1 6 ? -3.960 1.019 16.666 1.00 24.35 ? 6 DA A "C3'" 1 ATOM 111 O "O3'" . DA A 1 6 ? -3.644 2.372 16.416 1.00 27.10 ? 6 DA A "O3'" 1 ATOM 112 C "C2'" . DA A 1 6 ? -5.139 0.627 15.803 1.00 22.36 ? 6 DA A "C2'" 1 ATOM 113 C "C1'" . DA A 1 6 ? -4.399 0.397 14.516 1.00 21.22 ? 6 DA A "C1'" 1 ATOM 114 N N9 . DA A 1 6 ? -5.094 -0.471 13.582 1.00 21.73 ? 6 DA A N9 1 ATOM 115 C C8 . DA A 1 6 ? -5.684 -1.663 13.853 1.00 22.40 ? 6 DA A C8 1 ATOM 116 N N7 . DA A 1 6 ? -6.217 -2.239 12.810 1.00 23.01 ? 6 DA A N7 1 ATOM 117 C C5 . DA A 1 6 ? -5.962 -1.367 11.791 1.00 22.23 ? 6 DA A C5 1 ATOM 118 C C6 . DA A 1 6 ? -6.279 -1.422 10.430 1.00 24.29 ? 6 DA A C6 1 ATOM 119 N N6 . DA A 1 6 ? -6.951 -2.449 9.880 1.00 22.56 ? 6 DA A N6 1 ATOM 120 N N1 . DA A 1 6 ? -5.866 -0.379 9.678 1.00 23.49 ? 6 DA A N1 1 ATOM 121 C C2 . DA A 1 6 ? -5.198 0.631 10.241 1.00 22.97 ? 6 DA A C2 1 ATOM 122 N N3 . DA A 1 6 ? -4.826 0.786 11.500 1.00 22.51 ? 6 DA A N3 1 ATOM 123 C C4 . DA A 1 6 ? -5.257 -0.265 12.233 1.00 22.25 ? 6 DA A C4 1 ATOM 124 P P . DC A 1 7 ? -2.832 3.272 17.425 1.00 24.84 ? 7 DC A P 1 ATOM 125 O OP1 . DC A 1 7 ? -1.930 4.157 16.682 1.00 28.36 ? 7 DC A OP1 1 ATOM 126 O OP2 . DC A 1 7 ? -2.265 2.417 18.457 1.00 27.71 ? 7 DC A OP2 1 ATOM 127 O "O5'" . DC A 1 7 ? -4.007 4.105 18.074 1.00 25.21 ? 7 DC A "O5'" 1 ATOM 128 C "C5'" . DC A 1 7 ? -4.983 3.371 18.677 1.00 24.32 ? 7 DC A "C5'" 1 ATOM 129 C "C4'" . DC A 1 7 ? -5.975 4.100 19.546 1.00 26.27 ? 7 DC A "C4'" 1 ATOM 130 O "O4'" . DC A 1 7 ? -6.538 3.042 20.353 1.00 26.76 ? 7 DC A "O4'" 1 ATOM 131 C "C3'" . DC A 1 7 ? -5.513 5.120 20.591 1.00 27.58 ? 7 DC A "C3'" 1 ATOM 132 O "O3'" . DC A 1 7 ? -6.645 5.855 21.090 1.00 28.42 ? 7 DC A "O3'" 1 ATOM 133 C "C2'" . DC A 1 7 ? -4.939 4.234 21.667 1.00 24.01 ? 7 DC A "C2'" 1 ATOM 134 C "C1'" . DC A 1 7 ? -5.878 3.035 21.609 1.00 24.49 ? 7 DC A "C1'" 1 ATOM 135 N N1 . DC A 1 7 ? -5.181 1.709 21.811 1.00 22.54 ? 7 DC A N1 1 ATOM 136 C C2 . DC A 1 7 ? -4.964 1.299 23.119 1.00 19.76 ? 7 DC A C2 1 ATOM 137 O O2 . DC A 1 7 ? -5.328 1.995 24.053 1.00 21.64 ? 7 DC A O2 1 ATOM 138 N N3 . DC A 1 7 ? -4.371 0.139 23.319 1.00 21.11 ? 7 DC A N3 1 ATOM 139 C C4 . DC A 1 7 ? -3.996 -0.615 22.304 1.00 22.13 ? 7 DC A C4 1 ATOM 140 N N4 . DC A 1 7 ? -3.397 -1.763 22.619 1.00 23.12 ? 7 DC A N4 1 ATOM 141 C C5 . DC A 1 7 ? -4.218 -0.240 20.949 1.00 20.84 ? 7 DC A C5 1 ATOM 142 C C6 . DC A 1 7 ? -4.814 0.925 20.760 1.00 21.52 ? 7 DC A C6 1 ATOM 143 P P . DC A 1 8 ? -6.627 7.441 21.236 1.00 28.78 ? 8 DC A P 1 ATOM 144 O OP1 . DC A 1 8 ? -7.850 7.846 21.930 1.00 26.98 ? 8 DC A OP1 1 ATOM 145 O OP2 . DC A 1 8 ? -6.262 8.000 19.911 1.00 25.43 ? 8 DC A OP2 1 ATOM 146 O "O5'" . DC A 1 8 ? -5.395 7.615 22.239 1.00 30.18 ? 8 DC A "O5'" 1 ATOM 147 C "C5'" . DC A 1 8 ? -5.617 7.967 23.576 1.00 31.67 ? 8 DC A "C5'" 1 ATOM 148 C "C4'" . DC A 1 8 ? -4.303 8.096 24.292 1.00 30.71 ? 8 DC A "C4'" 1 ATOM 149 O "O4'" . DC A 1 8 ? -3.600 6.853 24.149 1.00 31.73 ? 8 DC A "O4'" 1 ATOM 150 C "C3'" . DC A 1 8 ? -3.391 9.145 23.705 1.00 32.36 ? 8 DC A "C3'" 1 ATOM 151 O "O3'" . DC A 1 8 ? -2.644 9.799 24.732 1.00 32.89 ? 8 DC A "O3'" 1 ATOM 152 C "C2'" . DC A 1 8 ? -2.507 8.321 22.767 1.00 32.04 ? 8 DC A "C2'" 1 ATOM 153 C "C1'" . DC A 1 8 ? -2.337 7.045 23.563 1.00 31.92 ? 8 DC A "C1'" 1 ATOM 154 N N1 . DC A 1 8 ? -1.988 5.783 22.823 1.00 32.23 ? 8 DC A N1 1 ATOM 155 C C2 . DC A 1 8 ? -1.714 4.644 23.577 1.00 30.35 ? 8 DC A C2 1 ATOM 156 O O2 . DC A 1 8 ? -1.751 4.695 24.797 1.00 29.54 ? 8 DC A O2 1 ATOM 157 N N3 . DC A 1 8 ? -1.424 3.499 22.931 1.00 32.33 ? 8 DC A N3 1 ATOM 158 C C4 . DC A 1 8 ? -1.389 3.439 21.593 1.00 30.20 ? 8 DC A C4 1 ATOM 159 N N4 . DC A 1 8 ? -1.065 2.258 21.042 1.00 29.67 ? 8 DC A N4 1 ATOM 160 C C5 . DC A 1 8 ? -1.638 4.588 20.804 1.00 29.19 ? 8 DC A C5 1 ATOM 161 C C6 . DC A 1 8 ? -1.937 5.716 21.450 1.00 31.71 ? 8 DC A C6 1 ATOM 162 P P . DC A 1 9 ? -3.126 11.149 25.416 1.00 31.53 ? 9 DC A P 1 ATOM 163 O OP1 . DC A 1 9 ? -4.571 11.042 25.640 1.00 34.54 ? 9 DC A OP1 1 ATOM 164 O OP2 . DC A 1 9 ? -2.506 12.209 24.607 1.00 31.61 ? 9 DC A OP2 1 ATOM 165 O "O5'" . DC A 1 9 ? -2.462 11.251 26.864 1.00 31.56 ? 9 DC A "O5'" 1 ATOM 166 C "C5'" . DC A 1 9 ? -2.661 10.336 27.902 1.00 29.17 ? 9 DC A "C5'" 1 ATOM 167 C "C4'" . DC A 1 9 ? -1.311 9.904 28.449 1.00 28.24 ? 9 DC A "C4'" 1 ATOM 168 O "O4'" . DC A 1 9 ? -0.820 8.850 27.601 1.00 30.86 ? 9 DC A "O4'" 1 ATOM 169 C "C3'" . DC A 1 9 ? -0.170 10.912 28.465 1.00 29.14 ? 9 DC A "C3'" 1 ATOM 170 O "O3'" . DC A 1 9 ? 0.735 10.543 29.496 1.00 31.40 ? 9 DC A "O3'" 1 ATOM 171 C "C2'" . DC A 1 9 ? 0.540 10.635 27.149 1.00 29.86 ? 9 DC A "C2'" 1 ATOM 172 C "C1'" . DC A 1 9 ? 0.506 9.120 27.186 1.00 29.34 ? 9 DC A "C1'" 1 ATOM 173 N N1 . DC A 1 9 ? 0.759 8.379 25.925 1.00 28.28 ? 9 DC A N1 1 ATOM 174 C C2 . DC A 1 9 ? 1.047 6.999 25.975 1.00 28.20 ? 9 DC A C2 1 ATOM 175 O O2 . DC A 1 9 ? 1.109 6.379 27.032 1.00 29.25 ? 9 DC A O2 1 ATOM 176 N N3 . DC A 1 9 ? 1.267 6.316 24.837 1.00 27.47 ? 9 DC A N3 1 ATOM 177 C C4 . DC A 1 9 ? 1.192 6.931 23.674 1.00 27.94 ? 9 DC A C4 1 ATOM 178 N N4 . DC A 1 9 ? 1.419 6.155 22.612 1.00 27.21 ? 9 DC A N4 1 ATOM 179 C C5 . DC A 1 9 ? 0.888 8.335 23.574 1.00 28.58 ? 9 DC A C5 1 ATOM 180 C C6 . DC A 1 9 ? 0.677 9.014 24.714 1.00 29.15 ? 9 DC A C6 1 ATOM 181 P P . DG A 1 10 ? 0.860 11.274 30.892 1.00 28.63 ? 10 DG A P 1 ATOM 182 O OP1 . DG A 1 10 ? -0.433 11.303 31.548 1.00 28.73 ? 10 DG A OP1 1 ATOM 183 O OP2 . DG A 1 10 ? 1.619 12.454 30.607 1.00 31.76 ? 10 DG A OP2 1 ATOM 184 O "O5'" . DG A 1 10 ? 1.832 10.335 31.737 1.00 32.65 ? 10 DG A "O5'" 1 ATOM 185 C "C5'" . DG A 1 10 ? 1.422 9.130 32.398 1.00 32.02 ? 10 DG A "C5'" 1 ATOM 186 C "C4'" . DG A 1 10 ? 2.508 8.069 32.272 1.00 30.08 ? 10 DG A "C4'" 1 ATOM 187 O "O4'" . DG A 1 10 ? 2.757 7.822 30.871 1.00 29.61 ? 10 DG A "O4'" 1 ATOM 188 C "C3'" . DG A 1 10 ? 3.867 8.450 32.821 1.00 30.04 ? 10 DG A "C3'" 1 ATOM 189 O "O3'" . DG A 1 10 ? 4.577 7.290 33.253 1.00 30.88 ? 10 DG A "O3'" 1 ATOM 190 C "C2'" . DG A 1 10 ? 4.557 9.063 31.606 1.00 30.33 ? 10 DG A "C2'" 1 ATOM 191 C "C1'" . DG A 1 10 ? 4.111 8.076 30.538 1.00 30.94 ? 10 DG A "C1'" 1 ATOM 192 N N9 . DG A 1 10 ? 4.030 8.590 29.172 1.00 32.04 ? 10 DG A N9 1 ATOM 193 C C8 . DG A 1 10 ? 3.637 9.847 28.826 1.00 32.94 ? 10 DG A C8 1 ATOM 194 N N7 . DG A 1 10 ? 3.606 10.080 27.569 1.00 32.32 ? 10 DG A N7 1 ATOM 195 C C5 . DG A 1 10 ? 4.010 8.892 26.997 1.00 32.71 ? 10 DG A C5 1 ATOM 196 C C6 . DG A 1 10 ? 4.161 8.554 25.630 1.00 30.65 ? 10 DG A C6 1 ATOM 197 O O6 . DG A 1 10 ? 3.964 9.237 24.636 1.00 29.81 ? 10 DG A O6 1 ATOM 198 N N1 . DG A 1 10 ? 4.580 7.257 25.463 1.00 31.43 ? 10 DG A N1 1 ATOM 199 C C2 . DG A 1 10 ? 4.822 6.397 26.492 1.00 33.94 ? 10 DG A C2 1 ATOM 200 N N2 . DG A 1 10 ? 5.242 5.192 26.123 1.00 38.42 ? 10 DG A N2 1 ATOM 201 N N3 . DG A 1 10 ? 4.693 6.676 27.779 1.00 35.26 ? 10 DG A N3 1 ATOM 202 C C4 . DG A 1 10 ? 4.277 7.957 27.971 1.00 33.72 ? 10 DG A C4 1 ATOM 203 O "O5'" . DC B 1 1 ? -19.555 0.496 15.116 1.00 30.76 ? 11 DC B "O5'" 1 ATOM 204 C "C5'" . DC B 1 1 ? -20.916 0.349 14.752 1.00 30.75 ? 11 DC B "C5'" 1 ATOM 205 C "C4'" . DC B 1 1 ? -21.163 0.872 13.360 1.00 30.69 ? 11 DC B "C4'" 1 ATOM 206 O "O4'" . DC B 1 1 ? -20.963 2.300 13.333 1.00 29.35 ? 11 DC B "O4'" 1 ATOM 207 C "C3'" . DC B 1 1 ? -20.226 0.269 12.333 1.00 33.07 ? 11 DC B "C3'" 1 ATOM 208 O "O3'" . DC B 1 1 ? -20.982 -0.049 11.186 1.00 33.46 ? 11 DC B "O3'" 1 ATOM 209 C "C2'" . DC B 1 1 ? -19.185 1.388 12.132 1.00 33.24 ? 11 DC B "C2'" 1 ATOM 210 C "C1'" . DC B 1 1 ? -20.002 2.647 12.374 1.00 31.00 ? 11 DC B "C1'" 1 ATOM 211 N N1 . DC B 1 1 ? -19.241 3.840 12.841 1.00 30.76 ? 11 DC B N1 1 ATOM 212 C C2 . DC B 1 1 ? -18.882 4.809 11.908 1.00 30.41 ? 11 DC B C2 1 ATOM 213 O O2 . DC B 1 1 ? -19.187 4.637 10.725 1.00 30.78 ? 11 DC B O2 1 ATOM 214 N N3 . DC B 1 1 ? -18.221 5.907 12.328 1.00 29.60 ? 11 DC B N3 1 ATOM 215 C C4 . DC B 1 1 ? -17.927 6.036 13.622 1.00 32.96 ? 11 DC B C4 1 ATOM 216 N N4 . DC B 1 1 ? -17.252 7.131 13.984 1.00 37.81 ? 11 DC B N4 1 ATOM 217 C C5 . DC B 1 1 ? -18.268 5.076 14.619 1.00 30.78 ? 11 DC B C5 1 ATOM 218 C C6 . DC B 1 1 ? -18.927 4.002 14.166 1.00 33.08 ? 11 DC B C6 1 ATOM 219 P P . DG B 1 2 ? -21.501 -1.529 10.951 1.00 37.63 ? 12 DG B P 1 ATOM 220 O OP1 . DG B 1 2 ? -22.678 -1.531 10.064 1.00 36.15 ? 12 DG B OP1 1 ATOM 221 O OP2 . DG B 1 2 ? -21.590 -2.181 12.277 1.00 40.80 ? 12 DG B OP2 1 ATOM 222 O "O5'" . DG B 1 2 ? -20.318 -2.192 10.125 1.00 37.38 ? 12 DG B "O5'" 1 ATOM 223 C "C5'" . DG B 1 2 ? -19.976 -1.656 8.834 1.00 34.82 ? 12 DG B "C5'" 1 ATOM 224 C "C4'" . DG B 1 2 ? -18.470 -1.632 8.616 1.00 31.06 ? 12 DG B "C4'" 1 ATOM 225 O "O4'" . DG B 1 2 ? -17.911 -0.464 9.261 1.00 31.55 ? 12 DG B "O4'" 1 ATOM 226 C "C3'" . DG B 1 2 ? -17.706 -2.824 9.194 1.00 30.53 ? 12 DG B "C3'" 1 ATOM 227 O "O3'" . DG B 1 2 ? -16.852 -3.375 8.214 1.00 30.68 ? 12 DG B "O3'" 1 ATOM 228 C "C2'" . DG B 1 2 ? -16.875 -2.241 10.326 1.00 28.92 ? 12 DG B "C2'" 1 ATOM 229 C "C1'" . DG B 1 2 ? -16.648 -0.851 9.763 1.00 28.92 ? 12 DG B "C1'" 1 ATOM 230 N N9 . DG B 1 2 ? -16.292 0.128 10.761 1.00 29.28 ? 12 DG B N9 1 ATOM 231 C C8 . DG B 1 2 ? -16.306 -0.043 12.122 1.00 29.63 ? 12 DG B C8 1 ATOM 232 N N7 . DG B 1 2 ? -15.965 1.012 12.796 1.00 30.69 ? 12 DG B N7 1 ATOM 233 C C5 . DG B 1 2 ? -15.692 1.922 11.804 1.00 30.22 ? 12 DG B C5 1 ATOM 234 C C6 . DG B 1 2 ? -15.278 3.243 11.945 1.00 30.57 ? 12 DG B C6 1 ATOM 235 O O6 . DG B 1 2 ? -15.060 3.817 12.999 1.00 29.20 ? 12 DG B O6 1 ATOM 236 N N1 . DG B 1 2 ? -15.121 3.879 10.705 1.00 32.30 ? 12 DG B N1 1 ATOM 237 C C2 . DG B 1 2 ? -15.340 3.288 9.473 1.00 31.28 ? 12 DG B C2 1 ATOM 238 N N2 . DG B 1 2 ? -15.142 4.083 8.385 1.00 28.29 ? 12 DG B N2 1 ATOM 239 N N3 . DG B 1 2 ? -15.726 2.011 9.349 1.00 29.05 ? 12 DG B N3 1 ATOM 240 C C4 . DG B 1 2 ? -15.878 1.408 10.544 1.00 28.56 ? 12 DG B C4 1 ATOM 241 P P . DG B 1 3 ? -17.331 -4.545 7.262 1.00 29.35 ? 13 DG B P 1 ATOM 242 O OP1 . DG B 1 3 ? -18.770 -4.394 6.997 1.00 30.76 ? 13 DG B OP1 1 ATOM 243 O OP2 . DG B 1 3 ? -16.864 -5.768 7.939 1.00 30.32 ? 13 DG B OP2 1 ATOM 244 O "O5'" . DG B 1 3 ? -16.493 -4.284 5.937 1.00 29.14 ? 13 DG B "O5'" 1 ATOM 245 C "C5'" . DG B 1 3 ? -16.652 -3.126 5.165 1.00 28.85 ? 13 DG B "C5'" 1 ATOM 246 C "C4'" . DG B 1 3 ? -15.292 -2.606 4.754 1.00 28.75 ? 13 DG B "C4'" 1 ATOM 247 O "O4'" . DG B 1 3 ? -14.761 -1.794 5.840 1.00 30.56 ? 13 DG B "O4'" 1 ATOM 248 C "C3'" . DG B 1 3 ? -14.245 -3.664 4.461 1.00 29.81 ? 13 DG B "C3'" 1 ATOM 249 O "O3'" . DG B 1 3 ? -13.336 -3.148 3.549 1.00 30.94 ? 13 DG B "O3'" 1 ATOM 250 C "C2'" . DG B 1 3 ? -13.510 -3.771 5.787 1.00 29.68 ? 13 DG B "C2'" 1 ATOM 251 C "C1'" . DG B 1 3 ? -13.495 -2.302 6.205 1.00 29.27 ? 13 DG B "C1'" 1 ATOM 252 N N9 . DG B 1 3 ? -13.324 -2.035 7.625 1.00 28.49 ? 13 DG B N9 1 ATOM 253 C C8 . DG B 1 3 ? -13.467 -2.894 8.684 1.00 26.25 ? 13 DG B C8 1 ATOM 254 N N7 . DG B 1 3 ? -13.228 -2.310 9.820 1.00 27.97 ? 13 DG B N7 1 ATOM 255 C C5 . DG B 1 3 ? -12.886 -1.002 9.504 1.00 27.40 ? 13 DG B C5 1 ATOM 256 C C6 . DG B 1 3 ? -12.532 0.105 10.318 1.00 27.43 ? 13 DG B C6 1 ATOM 257 O O6 . DG B 1 3 ? -12.426 0.182 11.545 1.00 28.97 ? 13 DG B O6 1 ATOM 258 N N1 . DG B 1 3 ? -12.256 1.233 9.566 1.00 28.32 ? 13 DG B N1 1 ATOM 259 C C2 . DG B 1 3 ? -12.344 1.294 8.193 1.00 28.94 ? 13 DG B C2 1 ATOM 260 N N2 . DG B 1 3 ? -12.067 2.473 7.615 1.00 30.51 ? 13 DG B N2 1 ATOM 261 N N3 . DG B 1 3 ? -12.680 0.270 7.430 1.00 28.09 ? 13 DG B N3 1 ATOM 262 C C4 . DG B 1 3 ? -12.949 -0.830 8.148 1.00 27.60 ? 13 DG B C4 1 ATOM 263 P P . DG B 1 4 ? -13.259 -3.545 2.029 1.00 29.96 ? 14 DG B P 1 ATOM 264 O OP1 . DG B 1 4 ? -14.561 -3.337 1.405 1.00 31.97 ? 14 DG B OP1 1 ATOM 265 O OP2 . DG B 1 4 ? -12.586 -4.837 1.960 1.00 32.48 ? 14 DG B OP2 1 ATOM 266 O "O5'" . DG B 1 4 ? -12.296 -2.408 1.499 1.00 30.95 ? 14 DG B "O5'" 1 ATOM 267 C "C5'" . DG B 1 4 ? -12.791 -1.088 1.399 1.00 31.01 ? 14 DG B "C5'" 1 ATOM 268 C "C4'" . DG B 1 4 ? -11.666 -0.071 1.533 1.00 31.83 ? 14 DG B "C4'" 1 ATOM 269 O "O4'" . DG B 1 4 ? -11.211 0.065 2.911 1.00 33.60 ? 14 DG B "O4'" 1 ATOM 270 C "C3'" . DG B 1 4 ? -10.408 -0.379 0.759 1.00 32.64 ? 14 DG B "C3'" 1 ATOM 271 O "O3'" . DG B 1 4 ? -9.895 0.870 0.324 1.00 33.13 ? 14 DG B "O3'" 1 ATOM 272 C "C2'" . DG B 1 4 ? -9.540 -1.124 1.784 1.00 33.54 ? 14 DG B "C2'" 1 ATOM 273 C "C1'" . DG B 1 4 ? -9.874 -0.378 3.062 1.00 32.64 ? 14 DG B "C1'" 1 ATOM 274 N N9 . DG B 1 4 ? -9.855 -1.167 4.284 1.00 32.85 ? 14 DG B N9 1 ATOM 275 C C8 . DG B 1 4 ? -10.084 -2.499 4.405 1.00 33.06 ? 14 DG B C8 1 ATOM 276 N N7 . DG B 1 4 ? -10.020 -2.900 5.634 1.00 34.71 ? 14 DG B N7 1 ATOM 277 C C5 . DG B 1 4 ? -9.737 -1.772 6.389 1.00 32.02 ? 14 DG B C5 1 ATOM 278 C C6 . DG B 1 4 ? -9.561 -1.589 7.789 1.00 32.00 ? 14 DG B C6 1 ATOM 279 O O6 . DG B 1 4 ? -9.596 -2.408 8.699 1.00 32.09 ? 14 DG B O6 1 ATOM 280 N N1 . DG B 1 4 ? -9.297 -0.273 8.134 1.00 32.96 ? 14 DG B N1 1 ATOM 281 C C2 . DG B 1 4 ? -9.216 0.746 7.222 1.00 34.28 ? 14 DG B C2 1 ATOM 282 N N2 . DG B 1 4 ? -8.958 1.955 7.701 1.00 34.09 ? 14 DG B N2 1 ATOM 283 N N3 . DG B 1 4 ? -9.387 0.593 5.919 1.00 34.49 ? 14 DG B N3 1 ATOM 284 C C4 . DG B 1 4 ? -9.640 -0.695 5.563 1.00 32.68 ? 14 DG B C4 1 ATOM 285 P P . DT B 1 5 ? -8.435 1.054 -0.280 1.00 34.39 ? 15 DT B P 1 ATOM 286 O OP1 . DT B 1 5 ? -8.570 2.122 -1.270 1.00 35.24 ? 15 DT B OP1 1 ATOM 287 O OP2 . DT B 1 5 ? -7.837 -0.226 -0.690 1.00 34.84 ? 15 DT B OP2 1 ATOM 288 O "O5'" . DT B 1 5 ? -7.570 1.585 0.946 1.00 33.86 ? 15 DT B "O5'" 1 ATOM 289 C "C5'" . DT B 1 5 ? -7.998 2.718 1.660 1.00 33.86 ? 15 DT B "C5'" 1 ATOM 290 C "C4'" . DT B 1 5 ? -6.866 3.232 2.489 1.00 33.42 ? 15 DT B "C4'" 1 ATOM 291 O "O4'" . DT B 1 5 ? -6.915 2.607 3.788 1.00 33.35 ? 15 DT B "O4'" 1 ATOM 292 C "C3'" . DT B 1 5 ? -5.521 2.908 1.858 1.00 36.14 ? 15 DT B "C3'" 1 ATOM 293 O "O3'" . DT B 1 5 ? -4.820 4.148 1.665 1.00 38.25 ? 15 DT B "O3'" 1 ATOM 294 C "C2'" . DT B 1 5 ? -4.831 1.949 2.838 1.00 34.24 ? 15 DT B "C2'" 1 ATOM 295 C "C1'" . DT B 1 5 ? -5.662 2.054 4.118 1.00 31.51 ? 15 DT B "C1'" 1 ATOM 296 N N1 . DT B 1 5 ? -5.855 0.720 4.694 1.00 30.09 ? 15 DT B N1 1 ATOM 297 C C2 . DT B 1 5 ? -6.077 0.521 6.063 1.00 31.21 ? 15 DT B C2 1 ATOM 298 O O2 . DT B 1 5 ? -6.172 1.405 6.889 1.00 31.36 ? 15 DT B O2 1 ATOM 299 N N3 . DT B 1 5 ? -6.215 -0.790 6.450 1.00 31.60 ? 15 DT B N3 1 ATOM 300 C C4 . DT B 1 5 ? -6.162 -1.897 5.603 1.00 33.06 ? 15 DT B C4 1 ATOM 301 O O4 . DT B 1 5 ? -6.308 -3.029 6.044 1.00 34.85 ? 15 DT B O4 1 ATOM 302 C C5 . DT B 1 5 ? -5.920 -1.616 4.188 1.00 31.86 ? 15 DT B C5 1 ATOM 303 C C7 . DT B 1 5 ? -5.805 -2.697 3.149 1.00 31.85 ? 15 DT B C7 1 ATOM 304 C C6 . DT B 1 5 ? -5.770 -0.340 3.820 1.00 29.46 ? 15 DT B C6 1 ATOM 305 P P . DA B 1 6 ? -3.249 4.206 1.449 1.00 37.19 ? 16 DA B P 1 ATOM 306 O OP1 . DA B 1 6 ? -2.987 5.454 0.701 1.00 40.12 ? 16 DA B OP1 1 ATOM 307 O OP2 . DA B 1 6 ? -2.809 2.886 0.956 1.00 39.47 ? 16 DA B OP2 1 ATOM 308 O "O5'" . DA B 1 6 ? -2.605 4.392 2.892 1.00 34.44 ? 16 DA B "O5'" 1 ATOM 309 C "C5'" . DA B 1 6 ? -2.941 5.500 3.715 1.00 33.37 ? 16 DA B "C5'" 1 ATOM 310 C "C4'" . DA B 1 6 ? -2.220 5.421 5.044 1.00 31.96 ? 16 DA B "C4'" 1 ATOM 311 O "O4'" . DA B 1 6 ? -2.447 4.130 5.678 1.00 32.28 ? 16 DA B "O4'" 1 ATOM 312 C "C3'" . DA B 1 6 ? -0.710 5.554 4.905 1.00 32.51 ? 16 DA B "C3'" 1 ATOM 313 O "O3'" . DA B 1 6 ? -0.204 6.339 5.987 1.00 31.55 ? 16 DA B "O3'" 1 ATOM 314 C "C2'" . DA B 1 6 ? -0.220 4.093 4.873 1.00 32.19 ? 16 DA B "C2'" 1 ATOM 315 C "C1'" . DA B 1 6 ? -1.224 3.404 5.776 1.00 30.78 ? 16 DA B "C1'" 1 ATOM 316 N N9 . DA B 1 6 ? -1.524 2.010 5.469 1.00 29.61 ? 16 DA B N9 1 ATOM 317 C C8 . DA B 1 6 ? -1.419 1.330 4.287 1.00 28.41 ? 16 DA B C8 1 ATOM 318 N N7 . DA B 1 6 ? -1.782 0.070 4.371 1.00 27.01 ? 16 DA B N7 1 ATOM 319 C C5 . DA B 1 6 ? -2.128 -0.084 5.707 1.00 26.86 ? 16 DA B C5 1 ATOM 320 C C6 . DA B 1 6 ? -2.594 -1.157 6.474 1.00 28.35 ? 16 DA B C6 1 ATOM 321 N N6 . DA B 1 6 ? -2.830 -2.371 5.988 1.00 31.58 ? 16 DA B N6 1 ATOM 322 N N1 . DA B 1 6 ? -2.845 -0.968 7.777 1.00 27.11 ? 16 DA B N1 1 ATOM 323 C C2 . DA B 1 6 ? -2.632 0.226 8.299 1.00 27.69 ? 16 DA B C2 1 ATOM 324 N N3 . DA B 1 6 ? -2.200 1.305 7.685 1.00 28.59 ? 16 DA B N3 1 ATOM 325 C C4 . DA B 1 6 ? -1.976 1.091 6.388 1.00 27.24 ? 16 DA B C4 1 ATOM 326 P P . DC B 1 7 ? 1.334 6.741 6.090 1.00 33.37 ? 17 DC B P 1 ATOM 327 O OP1 . DC B 1 7 ? 1.377 8.167 6.457 1.00 35.34 ? 17 DC B OP1 1 ATOM 328 O OP2 . DC B 1 7 ? 2.051 6.193 4.922 1.00 29.56 ? 17 DC B OP2 1 ATOM 329 O "O5'" . DC B 1 7 ? 1.875 5.993 7.376 1.00 32.68 ? 17 DC B "O5'" 1 ATOM 330 C "C5'" . DC B 1 7 ? 1.130 5.908 8.583 1.00 34.20 ? 17 DC B "C5'" 1 ATOM 331 C "C4'" . DC B 1 7 ? 1.687 4.730 9.347 1.00 34.89 ? 17 DC B "C4'" 1 ATOM 332 O "O4'" . DC B 1 7 ? 1.252 3.491 8.747 1.00 34.15 ? 17 DC B "O4'" 1 ATOM 333 C "C3'" . DC B 1 7 ? 3.205 4.675 9.276 1.00 37.01 ? 17 DC B "C3'" 1 ATOM 334 O "O3'" . DC B 1 7 ? 3.704 4.320 10.539 1.00 39.20 ? 17 DC B "O3'" 1 ATOM 335 C "C2'" . DC B 1 7 ? 3.473 3.586 8.246 1.00 35.89 ? 17 DC B "C2'" 1 ATOM 336 C "C1'" . DC B 1 7 ? 2.357 2.632 8.641 1.00 32.77 ? 17 DC B "C1'" 1 ATOM 337 N N1 . DC B 1 7 ? 2.064 1.529 7.688 1.00 30.44 ? 17 DC B N1 1 ATOM 338 C C2 . DC B 1 7 ? 1.524 0.319 8.168 1.00 30.17 ? 17 DC B C2 1 ATOM 339 O O2 . DC B 1 7 ? 1.287 0.147 9.358 1.00 31.34 ? 17 DC B O2 1 ATOM 340 N N3 . DC B 1 7 ? 1.271 -0.687 7.311 1.00 30.23 ? 17 DC B N3 1 ATOM 341 C C4 . DC B 1 7 ? 1.514 -0.523 6.013 1.00 29.32 ? 17 DC B C4 1 ATOM 342 N N4 . DC B 1 7 ? 1.203 -1.558 5.226 1.00 30.74 ? 17 DC B N4 1 ATOM 343 C C5 . DC B 1 7 ? 2.057 0.693 5.490 1.00 28.78 ? 17 DC B C5 1 ATOM 344 C C6 . DC B 1 7 ? 2.319 1.683 6.356 1.00 29.51 ? 17 DC B C6 1 ATOM 345 P P . DC B 1 8 ? 4.502 5.362 11.436 1.00 39.63 ? 18 DC B P 1 ATOM 346 O OP1 . DC B 1 8 ? 3.596 6.482 11.722 1.00 38.23 ? 18 DC B OP1 1 ATOM 347 O OP2 . DC B 1 8 ? 5.818 5.646 10.808 1.00 38.40 ? 18 DC B OP2 1 ATOM 348 O "O5'" . DC B 1 8 ? 4.731 4.483 12.755 1.00 38.59 ? 18 DC B "O5'" 1 ATOM 349 C "C5'" . DC B 1 8 ? 3.751 3.551 13.210 1.00 35.86 ? 18 DC B "C5'" 1 ATOM 350 C "C4'" . DC B 1 8 ? 4.347 2.162 13.380 1.00 33.42 ? 18 DC B "C4'" 1 ATOM 351 O "O4'" . DC B 1 8 ? 4.256 1.426 12.143 1.00 33.61 ? 18 DC B "O4'" 1 ATOM 352 C "C3'" . DC B 1 8 ? 5.804 2.082 13.782 1.00 34.21 ? 18 DC B "C3'" 1 ATOM 353 O "O3'" . DC B 1 8 ? 5.942 1.050 14.728 1.00 38.69 ? 18 DC B "O3'" 1 ATOM 354 C "C2'" . DC B 1 8 ? 6.489 1.631 12.504 1.00 34.25 ? 18 DC B "C2'" 1 ATOM 355 C "C1'" . DC B 1 8 ? 5.436 0.739 11.877 1.00 32.76 ? 18 DC B "C1'" 1 ATOM 356 N N1 . DC B 1 8 ? 5.578 0.617 10.408 1.00 33.87 ? 18 DC B N1 1 ATOM 357 C C2 . DC B 1 8 ? 5.275 -0.572 9.733 1.00 33.53 ? 18 DC B C2 1 ATOM 358 O O2 . DC B 1 8 ? 4.850 -1.552 10.342 1.00 36.26 ? 18 DC B O2 1 ATOM 359 N N3 . DC B 1 8 ? 5.444 -0.625 8.394 1.00 33.29 ? 18 DC B N3 1 ATOM 360 C C4 . DC B 1 8 ? 5.903 0.430 7.721 1.00 34.82 ? 18 DC B C4 1 ATOM 361 N N4 . DC B 1 8 ? 6.045 0.313 6.393 1.00 36.04 ? 18 DC B N4 1 ATOM 362 C C5 . DC B 1 8 ? 6.253 1.650 8.370 1.00 33.77 ? 18 DC B C5 1 ATOM 363 C C6 . DC B 1 8 ? 6.073 1.686 9.696 1.00 35.40 ? 18 DC B C6 1 ATOM 364 P P . DC B 1 9 ? 6.595 1.270 16.166 1.00 40.20 ? 19 DC B P 1 ATOM 365 O OP1 . DC B 1 9 ? 5.612 1.948 17.040 1.00 35.73 ? 19 DC B OP1 1 ATOM 366 O OP2 . DC B 1 9 ? 7.946 1.856 15.908 1.00 40.76 ? 19 DC B OP2 1 ATOM 367 O "O5'" . DC B 1 9 ? 6.834 -0.229 16.690 1.00 39.09 ? 19 DC B "O5'" 1 ATOM 368 C "C5'" . DC B 1 9 ? 6.070 -1.386 16.296 1.00 37.38 ? 19 DC B "C5'" 1 ATOM 369 C "C4'" . DC B 1 9 ? 6.953 -2.432 15.623 1.00 33.66 ? 19 DC B "C4'" 1 ATOM 370 O "O4'" . DC B 1 9 ? 7.031 -2.110 14.208 1.00 33.44 ? 19 DC B "O4'" 1 ATOM 371 C "C3'" . DC B 1 9 ? 8.385 -2.473 16.144 1.00 33.20 ? 19 DC B "C3'" 1 ATOM 372 O "O3'" . DC B 1 9 ? 8.800 -3.734 16.644 1.00 35.27 ? 19 DC B "O3'" 1 ATOM 373 C "C2'" . DC B 1 9 ? 9.198 -2.166 14.880 1.00 34.12 ? 19 DC B "C2'" 1 ATOM 374 C "C1'" . DC B 1 9 ? 8.269 -2.586 13.747 1.00 32.02 ? 19 DC B "C1'" 1 ATOM 375 N N1 . DC B 1 9 ? 8.571 -2.047 12.376 1.00 30.15 ? 19 DC B N1 1 ATOM 376 C C2 . DC B 1 9 ? 8.144 -2.726 11.220 1.00 30.37 ? 19 DC B C2 1 ATOM 377 O O2 . DC B 1 9 ? 7.511 -3.781 11.291 1.00 30.97 ? 19 DC B O2 1 ATOM 378 N N3 . DC B 1 9 ? 8.456 -2.204 9.999 1.00 29.99 ? 19 DC B N3 1 ATOM 379 C C4 . DC B 1 9 ? 9.137 -1.059 9.902 1.00 27.63 ? 19 DC B C4 1 ATOM 380 N N4 . DC B 1 9 ? 9.381 -0.592 8.680 1.00 25.79 ? 19 DC B N4 1 ATOM 381 C C5 . DC B 1 9 ? 9.588 -0.357 11.046 1.00 24.24 ? 19 DC B C5 1 ATOM 382 C C6 . DC B 1 9 ? 9.286 -0.887 12.231 1.00 28.13 ? 19 DC B C6 1 ATOM 383 P P . DG B 1 10 ? 8.244 -4.469 17.955 1.00 36.24 ? 20 DG B P 1 ATOM 384 O OP1 . DG B 1 10 ? 6.848 -4.055 18.098 1.00 35.97 ? 20 DG B OP1 1 ATOM 385 O OP2 . DG B 1 10 ? 9.196 -4.188 19.046 1.00 36.13 ? 20 DG B OP2 1 ATOM 386 O "O5'" . DG B 1 10 ? 8.328 -6.039 17.630 1.00 31.62 ? 20 DG B "O5'" 1 ATOM 387 C "C5'" . DG B 1 10 ? 7.263 -6.696 16.964 1.00 32.39 ? 20 DG B "C5'" 1 ATOM 388 C "C4'" . DG B 1 10 ? 7.772 -7.655 15.884 1.00 33.14 ? 20 DG B "C4'" 1 ATOM 389 O "O4'" . DG B 1 10 ? 8.275 -6.942 14.722 1.00 32.60 ? 20 DG B "O4'" 1 ATOM 390 C "C3'" . DG B 1 10 ? 8.900 -8.583 16.320 1.00 33.89 ? 20 DG B "C3'" 1 ATOM 391 O "O3'" . DG B 1 10 ? 8.684 -9.836 15.769 1.00 34.84 ? 20 DG B "O3'" 1 ATOM 392 C "C2'" . DG B 1 10 ? 10.157 -7.981 15.725 1.00 34.48 ? 20 DG B "C2'" 1 ATOM 393 C "C1'" . DG B 1 10 ? 9.604 -7.319 14.465 1.00 31.96 ? 20 DG B "C1'" 1 ATOM 394 N N9 . DG B 1 10 ? 10.354 -6.132 14.118 1.00 28.36 ? 20 DG B N9 1 ATOM 395 C C8 . DG B 1 10 ? 10.961 -5.259 14.956 1.00 29.37 ? 20 DG B C8 1 ATOM 396 N N7 . DG B 1 10 ? 11.566 -4.282 14.349 1.00 32.02 ? 20 DG B N7 1 ATOM 397 C C5 . DG B 1 10 ? 11.347 -4.530 13.008 1.00 30.02 ? 20 DG B C5 1 ATOM 398 C C6 . DG B 1 10 ? 11.766 -3.820 11.859 1.00 29.33 ? 20 DG B C6 1 ATOM 399 O O6 . DG B 1 10 ? 12.429 -2.775 11.766 1.00 29.90 ? 20 DG B O6 1 ATOM 400 N N1 . DG B 1 10 ? 11.334 -4.457 10.704 1.00 29.67 ? 20 DG B N1 1 ATOM 401 C C2 . DG B 1 10 ? 10.568 -5.601 10.665 1.00 31.06 ? 20 DG B C2 1 ATOM 402 N N2 . DG B 1 10 ? 10.234 -6.052 9.459 1.00 35.65 ? 20 DG B N2 1 ATOM 403 N N3 . DG B 1 10 ? 10.160 -6.275 11.722 1.00 32.31 ? 20 DG B N3 1 ATOM 404 C C4 . DG B 1 10 ? 10.604 -5.682 12.862 1.00 31.19 ? 20 DG B C4 1 HETATM 405 CA CA . CA C 2 . ? -15.219 1.244 4.187 1.00 43.18 ? 1 CA B CA 1 HETATM 406 O O . HOH D 3 . ? -9.767 6.476 23.613 1.00 26.65 ? 11 HOH A O 1 HETATM 407 O O . HOH D 3 . ? 11.734 -8.842 5.661 1.00 24.79 ? 12 HOH A O 1 HETATM 408 O O . HOH D 3 . ? 4.163 4.511 29.408 1.00 27.75 ? 13 HOH A O 1 HETATM 409 O O . HOH D 3 . ? 5.349 11.916 32.526 1.00 34.06 ? 14 HOH A O 1 HETATM 410 O O . HOH D 3 . ? -7.028 4.189 24.891 1.00 22.60 ? 15 HOH A O 1 HETATM 411 O O . HOH D 3 . ? 2.981 -2.988 1.698 1.00 34.54 ? 16 HOH A O 1 HETATM 412 O O . HOH D 3 . ? -2.904 -10.482 3.500 1.00 40.73 ? 17 HOH A O 1 HETATM 413 O O . HOH D 3 . ? 1.471 10.251 20.989 1.00 24.78 ? 18 HOH A O 1 HETATM 414 O O . HOH D 3 . ? 5.746 -7.619 8.894 1.00 36.78 ? 19 HOH A O 1 HETATM 415 O O . HOH D 3 . ? -5.522 -7.056 5.815 1.00 28.23 ? 20 HOH A O 1 HETATM 416 O O . HOH E 3 . ? -18.652 1.498 5.921 1.00 29.91 ? 3 HOH B O 1 HETATM 417 O O . HOH E 3 . ? -20.267 -7.231 10.067 1.00 36.70 ? 4 HOH B O 1 HETATM 418 O O . HOH E 3 . ? 3.416 -2.843 13.244 1.00 33.84 ? 6 HOH B O 1 HETATM 419 O O . HOH E 3 . ? 6.664 -5.544 13.006 1.00 29.01 ? 10 HOH B O 1 HETATM 420 O O . HOH E 3 . ? -21.756 -5.709 7.776 1.00 27.67 ? 21 HOH B O 1 HETATM 421 O O . HOH E 3 . ? -11.489 -4.841 12.761 1.00 37.06 ? 22 HOH B O 1 HETATM 422 O O . HOH E 3 . ? 13.503 -1.697 13.757 1.00 31.13 ? 23 HOH B O 1 HETATM 423 O O . HOH E 3 . ? -14.015 -7.202 5.084 1.00 27.35 ? 24 HOH B O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DG 10 10 10 DG DG A . n B 1 1 DC 1 11 11 DC DC B . n B 1 2 DG 2 12 12 DG DG B . n B 1 3 DG 3 13 13 DG DG B . n B 1 4 DG 4 14 14 DG DG B . n B 1 5 DT 5 15 15 DT DT B . n B 1 6 DA 6 16 16 DA DA B . n B 1 7 DC 7 17 17 DC DC B . n B 1 8 DC 8 18 18 DC DC B . n B 1 9 DC 9 19 19 DC DC B . n B 1 10 DG 10 20 20 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA 1 1 1 CA CA B . D 3 HOH 1 11 11 HOH HOH A . D 3 HOH 2 12 1 HOH HOH A . D 3 HOH 3 13 2 HOH HOH A . D 3 HOH 4 14 14 HOH HOH A . D 3 HOH 5 15 15 HOH HOH A . D 3 HOH 6 16 5 HOH HOH A . D 3 HOH 7 17 17 HOH HOH A . D 3 HOH 8 18 7 HOH HOH A . D 3 HOH 9 19 8 HOH HOH A . D 3 HOH 10 20 9 HOH HOH A . E 3 HOH 1 3 3 HOH HOH B . E 3 HOH 2 4 4 HOH HOH B . E 3 HOH 3 6 6 HOH HOH B . E 3 HOH 4 10 10 HOH HOH B . E 3 HOH 5 21 12 HOH HOH B . E 3 HOH 6 22 13 HOH HOH B . E 3 HOH 7 23 16 HOH HOH B . E 3 HOH 8 24 18 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2940 ? 1 MORE -24 ? 1 'SSA (A^2)' 6840 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 -13.4853386801 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 34.5881051329 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-12-21 2 'Structure model' 1 1 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 AUTOMAR 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 100.34 104.50 -4.16 0.40 N 2 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.88 108.30 2.58 0.30 N 3 1 N3 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 117.64 121.90 -4.26 0.70 N 4 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 103.28 108.00 -4.72 0.70 N 5 1 C4 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 122.88 119.00 3.88 0.60 N 6 1 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 119.18 122.90 -3.72 0.60 N 7 1 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 110.32 108.30 2.02 0.30 N 8 1 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 110.79 108.30 2.49 0.30 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CA CA CA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 3T8P _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 -0.290 0.040 0.295 2.428 -19.724 5.192 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DG 2 1_555 B DC 9 1_555 1.159 -0.222 -0.016 4.334 -9.138 8.955 2 A_DG2:DC19_B A 2 ? B 19 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.913 -0.470 0.651 15.103 -9.236 -0.957 3 A_DG3:DC18_B A 3 ? B 18 ? 19 1 1 A DG 4 1_555 B DC 7 1_555 -0.054 -0.126 0.366 -2.580 -17.584 -2.552 4 A_DG4:DC17_B A 4 ? B 17 ? 19 1 1 A DT 5 1_555 B DA 6 1_555 -0.276 -0.259 -0.445 -0.109 -31.162 -2.463 5 A_DT5:DA16_B A 5 ? B 16 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 -0.999 0.260 -0.101 -14.263 -28.346 11.149 6 A_DA6:DT15_B A 6 ? B 15 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DG 2 1_555 B DC 9 1_555 0.177 2.897 3.486 5.620 4.619 49.789 3.043 0.237 3.721 5.453 -6.635 50.284 1 AA_DC1DG2:DC19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DG 2 1_555 B DC 9 1_555 A DG 3 1_555 B DC 8 1_555 -0.744 1.312 3.201 -7.268 -1.450 21.404 3.872 -0.755 3.181 -3.762 18.854 22.637 2 AA_DG2DG3:DC18DC19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DG 3 1_555 B DC 8 1_555 A DG 4 1_555 B DC 7 1_555 -0.690 2.098 3.996 -0.923 -0.943 48.796 2.626 0.750 3.969 -1.142 1.117 48.812 3 AA_DG3DG4:DC17DC18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DG 4 1_555 B DC 7 1_555 A DT 5 1_555 B DA 6 1_555 -0.078 0.348 3.171 4.689 0.038 31.024 0.636 0.998 3.126 0.071 -8.703 31.368 4 AA_DG4DT5:DA16DC17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 0.213 1.451 3.595 -6.250 7.388 35.951 1.155 -1.282 3.723 11.711 9.907 37.189 5 AA_DT5DA6:DT15DA16_BB A 5 ? B 16 ? A 6 ? B 15 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1NT8 _pdbx_initial_refinement_model.details 'PDB ENTRY 1NT8' #
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