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STRUCTURAL BIOLOGY
COMMUNICATIONS
Volume 63
|
Part 12
|
December 2007
|
Pages 1008–1013
https://doi.org/10.1107/S1744309107047781
Open
access
ISSN: 2053-230X
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STRUCTURAL BIOLOGY
COMMUNICATIONS
Volume 63
|
Part 12
|
December 2007
|
Pages 1008–1013
https://doi.org/10.1107/S1744309107047781
Open
access
ISSN: 2053-230X
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data_2HTO # _entry.id 2HTO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HTO pdb_00002hto 10.2210/pdb2hto/pdb NDB ZD0017 ? ? RCSB RCSB038748 ? ? WWPDB D_1000038748 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-08 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-03-13 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site 5 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2HTO _pdbx_database_status.recvd_initial_deposition_date 2006-07-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2HTT _pdbx_database_related.details 'The same NA in other space group' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bharanidharan, D.' 1 'Thiyagarajan, S.' 2 'Gautham, N.' 3 # _citation.id primary _citation.title 'Hexammineruthenium(III) ion interactions with Z-DNA' _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 63 _citation.page_first 1008 _citation.page_last 1013 _citation.year 2007 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18084080 _citation.pdbx_database_id_DOI 10.1107/S1744309107047781 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bharanidharan, D.' 1 ? primary 'Thiyagarajan, S.' 2 ? primary 'Gautham, N.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DA)-3') ; 1794.206 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*DTP*DGP*DCP*DGP*DCP*DG)-3') ; 1825.216 1 ? ? ? ? 3 non-polymer syn 'RUTHENIUM (III) HEXAAMINE ION' 203.253 1 ? ? ? ? 4 water nat water 18.015 48 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DG)(DC)(DA)' CGCGCA A ? 2 polydeoxyribonucleotide no no '(DT)(DG)(DC)(DG)(DC)(DG)' TGCGCG B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'RUTHENIUM (III) HEXAAMINE ION' NRU 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DA n 2 1 DT n 2 2 DG n 2 3 DC n 2 4 DG n 2 5 DC n 2 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NRU non-polymer . 'RUTHENIUM (III) HEXAAMINE ION' HEXAAMINORUTHENIUM 'H18 N6 Ru 3' 203.253 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DA 6 6 6 DA A A . n B 2 1 DT 1 7 7 DT T B . n B 2 2 DG 2 8 8 DG G B . n B 2 3 DC 3 9 9 DC C B . n B 2 4 DG 4 10 10 DG G B . n B 2 5 DC 5 11 11 DC C B . n B 2 6 DG 6 12 12 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NRU 1 13 13 NRU NRU A . D 4 HOH 1 15 15 HOH HOH A . D 4 HOH 2 18 18 HOH HOH A . D 4 HOH 3 19 19 HOH HOH A . D 4 HOH 4 21 21 HOH HOH A . D 4 HOH 5 24 24 HOH HOH A . D 4 HOH 6 25 25 HOH HOH A . D 4 HOH 7 26 26 HOH HOH A . D 4 HOH 8 28 28 HOH HOH A . D 4 HOH 9 29 29 HOH HOH A . D 4 HOH 10 33 33 HOH HOH A . D 4 HOH 11 36 36 HOH HOH A . D 4 HOH 12 37 37 HOH HOH A . D 4 HOH 13 38 38 HOH HOH A . D 4 HOH 14 43 43 HOH HOH A . D 4 HOH 15 48 48 HOH HOH A . D 4 HOH 16 54 54 HOH HOH A . D 4 HOH 17 59 59 HOH HOH A . D 4 HOH 18 61 61 HOH HOH A . E 4 HOH 1 14 14 HOH HOH B . E 4 HOH 2 16 16 HOH HOH B . E 4 HOH 3 17 17 HOH HOH B . E 4 HOH 4 20 20 HOH HOH B . E 4 HOH 5 22 22 HOH HOH B . E 4 HOH 6 23 23 HOH HOH B . E 4 HOH 7 27 27 HOH HOH B . E 4 HOH 8 30 30 HOH HOH B . E 4 HOH 9 31 31 HOH HOH B . E 4 HOH 10 32 32 HOH HOH B . E 4 HOH 11 34 34 HOH HOH B . E 4 HOH 12 35 35 HOH HOH B . E 4 HOH 13 39 39 HOH HOH B . E 4 HOH 14 40 40 HOH HOH B . E 4 HOH 15 41 41 HOH HOH B . E 4 HOH 16 42 42 HOH HOH B . E 4 HOH 17 44 44 HOH HOH B . E 4 HOH 18 45 45 HOH HOH B . E 4 HOH 19 46 46 HOH HOH B . E 4 HOH 20 47 47 HOH HOH B . E 4 HOH 21 49 49 HOH HOH B . E 4 HOH 22 50 50 HOH HOH B . E 4 HOH 23 51 51 HOH HOH B . E 4 HOH 24 52 52 HOH HOH B . E 4 HOH 25 53 53 HOH HOH B . E 4 HOH 26 55 55 HOH HOH B . E 4 HOH 27 56 56 HOH HOH B . E 4 HOH 28 57 57 HOH HOH B . E 4 HOH 29 58 58 HOH HOH B . E 4 HOH 30 60 60 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 AUTOMAR 'data reduction' . ? 2 AMoRE phasing . ? 3 # _cell.entry_id 2HTO _cell.length_a 17.953 _cell.length_b 30.821 _cell.length_c 44.596 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HTO _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2HTO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.704421 _exptl_crystal.density_percent_sol 51.73 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.9 _exptl_crystal_grow.pdbx_details 'MPD, sodium cacodylate, ruthenium hexammine chloride, spermine, pH 6.9, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'sodium cacodylate' ? ? ? 1 3 1 'ruthenium hexammine chloride' ? ? ? 1 4 1 spermine ? ? ? 1 5 1 H2O ? ? ? 1 6 2 MPD ? ? ? 1 7 2 'sodium cacodylate' ? ? ? 1 8 2 'ruthenium hexammine chloride' ? ? ? 1 9 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2004-06-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator NIL _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU300' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 2HTO _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 1.54 _reflns.number_obs 3590 _reflns.number_all 3590 _reflns.percent_possible_obs 90.8 _reflns.pdbx_Rmerge_I_obs 0.0526 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 4.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.04 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.54 _reflns_shell.d_res_low 1.60 _reflns_shell.percent_possible_all 94.2 _reflns_shell.Rmerge_I_obs 0.3578 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.pdbx_redundancy 4.84 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2HTO _refine.ls_number_reflns_obs 3276 _refine.ls_number_reflns_all 3530 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.35 _refine.ls_d_res_high 1.54 _refine.ls_percent_reflns_obs 90.08 _refine.ls_R_factor_obs 0.19134 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18923 _refine.ls_R_factor_R_free 0.2174 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.2 _refine.ls_number_reflns_R_free 254 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.958 _refine.B_iso_mean 16.782 _refine.aniso_B[1][1] 0.12 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] -0.11 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'NDB ENTRY ZD0013' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.120 _refine.pdbx_overall_ESU_R_Free 0.109 _refine.overall_SU_ML 0.072 _refine.overall_SU_B 2.085 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 252 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 48 _refine_hist.number_atoms_total 307 _refine_hist.d_res_high 1.54 _refine_hist.d_res_low 25.35 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.028 0.021 ? 290 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3.251 3.000 ? 457 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.148 0.200 ? 50 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.021 0.020 ? 125 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.211 0.200 ? 96 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.306 0.200 ? 157 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.216 0.200 ? 15 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.106 0.200 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.316 0.200 ? 12 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.308 3.000 ? 419 'X-RAY DIFFRACTION' ? r_scangle_it 2.942 4.500 ? 450 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.546 _refine_ls_shell.d_res_low 1.586 _refine_ls_shell.number_reflns_R_work 193 _refine_ls_shell.R_factor_R_work 0.292 _refine_ls_shell.percent_reflns_obs 76.00 _refine_ls_shell.R_factor_R_free 0.392 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 16 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2HTO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2HTO _struct.title 'Ruthenium hexammine ion interactions with Z-DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HTO _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Z-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 1 PDB 2HTO 2HTO ? ? ? 2 2 PDB 2HTO 2HTO ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2HTO A 1 ? 6 ? 2HTO 1 ? 6 ? 1 6 2 2 2HTO B 1 ? 6 ? 2HTO 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 830 ? 1 MORE -5 ? 1 'SSA (A^2)' 2410 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.details _struct_biol.pdbx_parent_biol_id 1 ? ? 2 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NRU _struct_site.pdbx_auth_seq_id 13 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 13 _struct_site.details 'BINDING SITE FOR RESIDUE NRU A 13' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 DC A 1 ? DC A 1 . ? 2_554 ? 2 AC1 13 DC A 3 ? DC A 3 . ? 4_455 ? 3 AC1 13 DG A 4 ? DG A 4 . ? 4_455 ? 4 AC1 13 DC A 5 ? DC A 5 . ? 1_555 ? 5 AC1 13 DA A 6 ? DA A 6 . ? 1_555 ? 6 AC1 13 HOH D . ? HOH A 21 . ? 1_555 ? 7 AC1 13 HOH D . ? HOH A 25 . ? 4_455 ? 8 AC1 13 HOH D . ? HOH A 59 . ? 2_554 ? 9 AC1 13 DT B 1 ? DT B 7 . ? 1_555 ? 10 AC1 13 DG B 2 ? DG B 8 . ? 4_455 ? 11 AC1 13 DG B 6 ? DG B 12 . ? 2_554 ? 12 AC1 13 HOH E . ? HOH B 34 . ? 2_554 ? 13 AC1 13 HOH E . ? HOH B 58 . ? 4_455 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 1.567 1.512 0.055 0.007 N 2 1 N9 A DG 2 ? ? C4 A DG 2 ? ? 1.441 1.375 0.066 0.008 N 3 1 C6 A DG 4 ? ? N1 A DG 4 ? ? 1.436 1.391 0.045 0.007 N 4 1 "O3'" A DA 6 ? ? "C3'" A DA 6 ? ? 1.530 1.435 0.095 0.013 N 5 1 N3 A DA 6 ? ? C4 A DA 6 ? ? 1.398 1.344 0.054 0.006 N 6 1 N9 A DA 6 ? ? C4 A DA 6 ? ? 1.451 1.374 0.077 0.006 N 7 1 "C2'" B DG 8 ? ? "C1'" B DG 8 ? ? 1.457 1.518 -0.061 0.010 N 8 1 C5 B DG 10 ? ? N7 B DG 10 ? ? 1.444 1.388 0.056 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A DC 1 ? ? N1 A DC 1 ? ? C2 A DC 1 ? ? 117.30 120.30 -3.00 0.40 N 2 1 N1 A DC 1 ? ? C2 A DC 1 ? ? N3 A DC 1 ? ? 114.28 119.20 -4.92 0.70 N 3 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 125.00 119.90 5.10 0.50 N 4 1 C4 A DC 1 ? ? C5 A DC 1 ? ? C6 A DC 1 ? ? 111.19 117.40 -6.21 0.50 N 5 1 C5 A DC 1 ? ? C6 A DC 1 ? ? N1 A DC 1 ? ? 128.70 121.00 7.70 0.50 N 6 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 129.97 121.90 8.07 0.70 N 7 1 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 103.90 106.40 -2.50 0.40 N 8 1 C5 A DG 4 ? ? C6 A DG 4 ? ? N1 A DG 4 ? ? 107.72 111.50 -3.78 0.50 N 9 1 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 124.20 119.90 4.30 0.60 N 10 1 "O5'" A DC 5 ? ? P A DC 5 ? B OP1 A DC 5 ? B 97.37 105.70 -8.33 0.90 N 11 1 "O5'" A DC 5 ? ? P A DC 5 ? B OP2 A DC 5 ? B 119.24 110.70 8.54 1.20 N 12 1 C5 A DC 5 ? ? C6 A DC 5 ? ? N1 A DC 5 ? ? 124.44 121.00 3.44 0.50 N 13 1 C6 A DA 6 ? ? N1 A DA 6 ? ? C2 A DA 6 ? ? 123.04 118.60 4.44 0.60 N 14 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 120.73 129.30 -8.57 0.50 N 15 1 C2 A DA 6 ? ? N3 A DA 6 ? ? C4 A DA 6 ? ? 117.53 110.60 6.93 0.50 N 16 1 C5 A DA 6 ? ? N7 A DA 6 ? ? C8 A DA 6 ? ? 108.51 103.90 4.61 0.50 N 17 1 N7 A DA 6 ? ? C8 A DA 6 ? ? N9 A DA 6 ? ? 110.26 113.80 -3.54 0.50 N 18 1 C5 B DT 7 ? ? C6 B DT 7 ? ? N1 B DT 7 ? ? 119.86 123.70 -3.84 0.60 N 19 1 N1 B DT 7 ? ? C2 B DT 7 ? ? O2 B DT 7 ? ? 117.43 123.10 -5.67 0.80 N 20 1 "O4'" B DG 8 ? ? "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? 100.27 104.50 -4.23 0.40 N 21 1 "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? "C2'" B DG 8 ? ? 108.84 103.10 5.74 0.90 N 22 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 103.68 108.00 -4.32 0.70 N 23 1 C5 B DG 8 ? ? N7 B DG 8 ? ? C8 B DG 8 ? ? 101.18 104.30 -3.12 0.50 N 24 1 N7 B DG 8 ? ? C8 B DG 8 ? ? N9 B DG 8 ? ? 118.82 113.10 5.72 0.50 N 25 1 C8 B DG 8 ? ? N9 B DG 8 ? ? C4 B DG 8 ? ? 103.72 106.40 -2.68 0.40 N 26 1 C5 B DC 9 ? ? C4 B DC 9 ? ? N4 B DC 9 ? ? 115.96 120.20 -4.24 0.70 N 27 1 C6 B DC 11 ? ? N1 B DC 11 ? ? C2 B DC 11 ? ? 115.33 120.30 -4.97 0.40 N 28 1 C2 B DC 11 ? ? N3 B DC 11 ? ? C4 B DC 11 ? ? 124.82 119.90 4.92 0.50 N 29 1 N3 B DC 11 ? ? C4 B DC 11 ? ? C5 B DC 11 ? ? 118.42 121.90 -3.48 0.40 N 30 1 C5 B DC 11 ? ? C6 B DC 11 ? ? N1 B DC 11 ? ? 126.15 121.00 5.15 0.50 N 31 1 N3 B DC 11 ? ? C4 B DC 11 ? ? N4 B DC 11 ? ? 123.25 118.00 5.25 0.70 N 32 1 C2 B DG 12 ? ? N3 B DG 12 ? ? C4 B DG 12 ? ? 115.11 111.90 3.21 0.50 N 33 1 C5 B DG 12 ? ? C6 B DG 12 ? ? N1 B DG 12 ? ? 116.30 111.50 4.80 0.50 N 34 1 C4 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 107.04 110.80 -3.76 0.40 N 35 1 C5 B DG 12 ? ? N7 B DG 12 ? ? C8 B DG 12 ? ? 108.91 104.30 4.61 0.50 N 36 1 C6 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 136.87 130.40 6.47 0.60 N 37 1 N1 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 113.89 119.90 -6.01 0.60 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 NRU N1 N N N 147 NRU RU RU N N 148 NRU N4 N N N 149 NRU N5 N N N 150 NRU N2 N N N 151 NRU N3 N N N 152 NRU N6 N N N 153 NRU HN11 H N N 154 NRU HN1 H N N 155 NRU HN12 H N N 156 NRU HN4 H N N 157 NRU HN41 H N N 158 NRU HN42 H N N 159 NRU HN5 H N N 160 NRU HN51 H N N 161 NRU HN52 H N N 162 NRU HN2 H N N 163 NRU HN21 H N N 164 NRU HN22 H N N 165 NRU HN3 H N N 166 NRU HN31 H N N 167 NRU HN32 H N N 168 NRU HN6 H N N 169 NRU HN61 H N N 170 NRU HN62 H N N 171 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 NRU N1 RU sing N N 152 NRU N1 HN11 sing N N 153 NRU N1 HN1 sing N N 154 NRU N1 HN12 sing N N 155 NRU RU N4 sing N N 156 NRU RU N5 sing N N 157 NRU RU N2 sing N N 158 NRU RU N3 sing N N 159 NRU RU N6 sing N N 160 NRU N4 HN4 sing N N 161 NRU N4 HN41 sing N N 162 NRU N4 HN42 sing N N 163 NRU N5 HN5 sing N N 164 NRU N5 HN51 sing N N 165 NRU N5 HN52 sing N N 166 NRU N2 HN2 sing N N 167 NRU N2 HN21 sing N N 168 NRU N2 HN22 sing N N 169 NRU N3 HN3 sing N N 170 NRU N3 HN31 sing N N 171 NRU N3 HN32 sing N N 172 NRU N6 HN6 sing N N 173 NRU N6 HN61 sing N N 174 NRU N6 HN62 sing N N 175 # _ndb_struct_conf_na.entry_id 2HTO _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 6 1_555 -1.774 -0.239 0.093 1.948 4.080 -3.343 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B DC 5 1_555 0.234 -0.095 0.262 -2.646 -2.327 -0.130 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DC 3 1_555 B DG 4 1_555 -0.212 -0.079 0.185 4.218 1.308 1.458 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 0.274 -0.184 0.077 0.652 -1.113 2.748 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1 1 A DC 5 1_555 B DG 2 1_555 -0.156 -0.117 0.253 1.419 0.694 0.656 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A DA 6 1_555 B DT 1 1_555 2.014 -0.394 0.178 -4.277 6.985 5.896 6 A_DA6:DT7_B A 6 ? B 7 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 6 1_555 A DG 2 1_555 B DC 5 1_555 -0.204 5.204 3.644 -2.919 0.484 -4.229 -61.235 -23.062 2.384 -5.722 -34.522 -5.161 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 5 1_555 A DC 3 1_555 B DG 4 1_555 0.156 -1.070 3.287 0.050 -2.735 -51.291 1.421 0.183 3.230 3.157 0.057 -51.359 2 AA_DG2DC3:DG10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 0.066 5.290 3.634 0.723 -4.528 -7.661 -17.480 3.056 5.794 30.549 4.876 -8.927 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B DG 2 1_555 0.043 -1.051 3.484 -1.810 -2.935 -50.383 1.452 -0.085 3.421 3.443 -2.123 -50.493 4 AA_DG4DC5:DG8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 2 1_555 A DA 6 1_555 B DT 1 1_555 0.325 5.198 3.700 2.851 2.182 -2.288 -82.575 20.838 -0.893 -34.949 45.660 -4.257 5 AA_DC5DA6:DT7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _pdbx_initial_refinement_model.accession_code 1XA2 _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'NDB ENTRY ZD0013' # _atom_sites.entry_id 2HTO _atom_sites.fract_transf_matrix[1][1] 0.055701 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032445 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022424 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P RU # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 10.719 3.167 15.426 1.00 19.46 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? 10.124 3.776 14.297 1.00 15.32 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 8.590 3.488 14.158 1.00 16.72 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 8.391 2.146 13.602 1.00 14.75 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 7.659 3.599 15.394 1.00 12.38 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 6.376 4.195 15.036 1.00 14.40 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 7.544 2.111 15.818 1.00 13.74 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 7.471 1.439 14.424 1.00 16.55 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 7.948 0.055 14.476 1.00 16.21 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? 6.998 -1.014 14.661 1.00 18.96 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? 5.823 -0.667 14.788 1.00 17.21 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? 7.572 -2.286 14.739 1.00 17.77 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? 8.862 -2.539 14.657 1.00 22.02 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? 9.197 -3.841 14.755 1.00 21.18 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? 9.843 -1.536 14.404 1.00 20.38 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? 9.274 -0.295 14.333 1.00 15.51 ? 1 DC A C6 1 ATOM 17 P P . DG A 1 2 ? 6.009 5.742 15.141 1.00 17.71 ? 2 DG A P 1 ATOM 18 O OP1 . DG A 1 2 ? 6.636 6.443 16.241 1.00 20.17 ? 2 DG A OP1 1 ATOM 19 O OP2 . DG A 1 2 ? 4.555 5.776 14.829 1.00 19.83 ? 2 DG A OP2 1 ATOM 20 O "O5'" . DG A 1 2 ? 6.743 6.357 13.893 1.00 15.18 ? 2 DG A "O5'" 1 ATOM 21 C "C5'" . DG A 1 2 ? 6.370 6.095 12.561 1.00 12.98 ? 2 DG A "C5'" 1 ATOM 22 C "C4'" . DG A 1 2 ? 7.283 6.731 11.567 1.00 12.44 ? 2 DG A "C4'" 1 ATOM 23 O "O4'" . DG A 1 2 ? 8.650 6.247 11.723 1.00 10.62 ? 2 DG A "O4'" 1 ATOM 24 C "C3'" . DG A 1 2 ? 6.854 6.292 10.194 1.00 12.92 ? 2 DG A "C3'" 1 ATOM 25 O "O3'" . DG A 1 2 ? 6.107 7.389 9.663 1.00 18.49 ? 2 DG A "O3'" 1 ATOM 26 C "C2'" . DG A 1 2 ? 8.167 6.278 9.479 1.00 12.46 ? 2 DG A "C2'" 1 ATOM 27 C "C1'" . DG A 1 2 ? 9.290 6.070 10.486 1.00 9.95 ? 2 DG A "C1'" 1 ATOM 28 N N9 . DG A 1 2 ? 9.772 4.705 10.511 1.00 12.37 ? 2 DG A N9 1 ATOM 29 C C8 . DG A 1 2 ? 11.061 4.343 10.506 1.00 12.33 ? 2 DG A C8 1 ATOM 30 N N7 . DG A 1 2 ? 11.282 3.050 10.566 1.00 13.46 ? 2 DG A N7 1 ATOM 31 C C5 . DG A 1 2 ? 10.046 2.475 10.656 1.00 14.31 ? 2 DG A C5 1 ATOM 32 C C6 . DG A 1 2 ? 9.654 1.102 10.714 1.00 12.82 ? 2 DG A C6 1 ATOM 33 O O6 . DG A 1 2 ? 10.347 0.103 10.782 1.00 13.32 ? 2 DG A O6 1 ATOM 34 N N1 . DG A 1 2 ? 8.250 0.958 10.761 1.00 11.86 ? 2 DG A N1 1 ATOM 35 C C2 . DG A 1 2 ? 7.332 2.002 10.711 1.00 12.23 ? 2 DG A C2 1 ATOM 36 N N2 . DG A 1 2 ? 6.011 1.667 10.829 1.00 12.37 ? 2 DG A N2 1 ATOM 37 N N3 . DG A 1 2 ? 7.718 3.285 10.649 1.00 11.31 ? 2 DG A N3 1 ATOM 38 C C4 . DG A 1 2 ? 9.061 3.453 10.579 1.00 12.49 ? 2 DG A C4 1 ATOM 39 P P A DC A 1 3 ? 4.523 7.370 9.349 0.46 15.19 ? 3 DC A P 1 ATOM 40 P P B DC A 1 3 ? 5.585 7.496 8.074 0.54 15.07 ? 3 DC A P 1 ATOM 41 O OP1 A DC A 1 3 ? 4.224 8.737 8.852 0.52 19.22 ? 3 DC A OP1 1 ATOM 42 O OP1 B DC A 1 3 ? 6.712 7.245 7.155 0.48 18.52 ? 3 DC A OP1 1 ATOM 43 O OP2 A DC A 1 3 ? 3.785 6.819 10.512 0.58 14.74 ? 3 DC A OP2 1 ATOM 44 O OP2 B DC A 1 3 ? 4.882 8.816 7.776 0.42 15.25 ? 3 DC A OP2 1 ATOM 45 O "O5'" . DC A 1 3 ? 4.506 6.373 8.106 1.00 12.63 ? 3 DC A "O5'" 1 ATOM 46 C "C5'" . DC A 1 3 ? 3.449 6.343 7.182 1.00 13.71 ? 3 DC A "C5'" 1 ATOM 47 C "C4'" . DC A 1 3 ? 3.013 4.930 6.861 1.00 11.40 ? 3 DC A "C4'" 1 ATOM 48 O "O4'" . DC A 1 3 ? 4.069 4.071 6.322 1.00 10.36 ? 3 DC A "O4'" 1 ATOM 49 C "C3'" . DC A 1 3 ? 2.481 4.187 8.066 1.00 11.43 ? 3 DC A "C3'" 1 ATOM 50 O "O3'" . DC A 1 3 ? 1.380 3.402 7.595 1.00 16.18 ? 3 DC A "O3'" 1 ATOM 51 C "C2'" . DC A 1 3 ? 3.693 3.334 8.508 1.00 10.32 ? 3 DC A "C2'" 1 ATOM 52 C "C1'" . DC A 1 3 ? 4.207 2.910 7.153 1.00 9.35 ? 3 DC A "C1'" 1 ATOM 53 N N1 . DC A 1 3 ? 5.682 2.584 7.221 1.00 8.66 ? 3 DC A N1 1 ATOM 54 C C2 . DC A 1 3 ? 5.994 1.197 7.382 1.00 9.16 ? 3 DC A C2 1 ATOM 55 O O2 . DC A 1 3 ? 5.040 0.402 7.507 1.00 12.29 ? 3 DC A O2 1 ATOM 56 N N3 . DC A 1 3 ? 7.269 0.834 7.388 1.00 9.34 ? 3 DC A N3 1 ATOM 57 C C4 . DC A 1 3 ? 8.252 1.752 7.325 1.00 10.53 ? 3 DC A C4 1 ATOM 58 N N4 . DC A 1 3 ? 9.509 1.356 7.393 1.00 11.21 ? 3 DC A N4 1 ATOM 59 C C5 . DC A 1 3 ? 7.949 3.123 7.155 1.00 10.69 ? 3 DC A C5 1 ATOM 60 C C6 . DC A 1 3 ? 6.709 3.518 7.104 1.00 7.82 ? 3 DC A C6 1 ATOM 61 P P . DG A 1 4 ? -0.104 3.986 7.707 1.00 16.21 ? 4 DG A P 1 ATOM 62 O OP1 . DG A 1 4 ? -0.321 4.712 8.969 1.00 16.37 ? 4 DG A OP1 1 ATOM 63 O OP2 . DG A 1 4 ? -0.833 2.722 7.443 1.00 20.81 ? 4 DG A OP2 1 ATOM 64 O "O5'" . DG A 1 4 ? -0.283 4.953 6.420 1.00 13.79 ? 4 DG A "O5'" 1 ATOM 65 C "C5'" . DG A 1 4 ? -0.148 4.415 5.136 1.00 16.40 ? 4 DG A "C5'" 1 ATOM 66 C "C4'" . DG A 1 4 ? -0.220 5.554 4.177 1.00 9.93 ? 4 DG A "C4'" 1 ATOM 67 O "O4'" . DG A 1 4 ? 0.874 6.460 4.358 1.00 11.59 ? 4 DG A "O4'" 1 ATOM 68 C "C3'" . DG A 1 4 ? -0.123 5.107 2.776 1.00 11.51 ? 4 DG A "C3'" 1 ATOM 69 O "O3'" . DG A 1 4 ? -1.490 4.966 2.270 1.00 16.99 ? 4 DG A "O3'" 1 ATOM 70 C "C2'" . DG A 1 4 ? 0.660 6.166 2.102 1.00 12.19 ? 4 DG A "C2'" 1 ATOM 71 C "C1'" . DG A 1 4 ? 1.469 6.869 3.167 1.00 11.13 ? 4 DG A "C1'" 1 ATOM 72 N N9 . DG A 1 4 ? 2.895 6.621 3.245 1.00 10.92 ? 4 DG A N9 1 ATOM 73 C C8 . DG A 1 4 ? 3.867 7.564 3.278 1.00 11.17 ? 4 DG A C8 1 ATOM 74 N N7 . DG A 1 4 ? 5.096 7.101 3.423 1.00 13.92 ? 4 DG A N7 1 ATOM 75 C C5 . DG A 1 4 ? 4.903 5.721 3.457 1.00 12.23 ? 4 DG A C5 1 ATOM 76 C C6 . DG A 1 4 ? 5.880 4.686 3.601 1.00 10.49 ? 4 DG A C6 1 ATOM 77 O O6 . DG A 1 4 ? 7.108 4.803 3.675 1.00 11.35 ? 4 DG A O6 1 ATOM 78 N N1 . DG A 1 4 ? 5.188 3.428 3.595 1.00 11.71 ? 4 DG A N1 1 ATOM 79 C C2 . DG A 1 4 ? 3.843 3.212 3.506 1.00 9.96 ? 4 DG A C2 1 ATOM 80 N N2 . DG A 1 4 ? 3.449 1.936 3.577 1.00 10.93 ? 4 DG A N2 1 ATOM 81 N N3 . DG A 1 4 ? 2.966 4.213 3.386 1.00 9.43 ? 4 DG A N3 1 ATOM 82 C C4 . DG A 1 4 ? 3.574 5.396 3.346 1.00 10.41 ? 4 DG A C4 1 ATOM 83 P P A DC A 1 5 ? -1.732 4.845 0.629 0.39 15.28 ? 5 DC A P 1 ATOM 84 P P B DC A 1 5 ? -2.107 3.524 1.884 0.61 15.16 ? 5 DC A P 1 ATOM 85 O OP1 A DC A 1 5 ? -0.823 5.653 -0.172 0.40 13.39 ? 5 DC A OP1 1 ATOM 86 O OP1 B DC A 1 5 ? -3.402 3.838 1.234 0.60 13.69 ? 5 DC A OP1 1 ATOM 87 O OP2 A DC A 1 5 ? -3.185 5.096 0.350 0.40 11.31 ? 5 DC A OP2 1 ATOM 88 O OP2 B DC A 1 5 ? -1.990 2.533 2.976 0.60 11.99 ? 5 DC A OP2 1 ATOM 89 O "O5'" . DC A 1 5 ? -1.225 3.313 0.507 1.00 12.88 ? 5 DC A "O5'" 1 ATOM 90 C "C5'" . DC A 1 5 ? -1.679 2.416 -0.541 1.00 14.05 ? 5 DC A "C5'" 1 ATOM 91 C "C4'" . DC A 1 5 ? -0.746 1.230 -0.642 1.00 13.38 ? 5 DC A "C4'" 1 ATOM 92 O "O4'" . DC A 1 5 ? 0.540 1.723 -1.168 1.00 13.90 ? 5 DC A "O4'" 1 ATOM 93 C "C3'" . DC A 1 5 ? -0.445 0.498 0.663 1.00 12.11 ? 5 DC A "C3'" 1 ATOM 94 O "O3'" . DC A 1 5 ? -0.379 -0.829 0.249 1.00 15.56 ? 5 DC A "O3'" 1 ATOM 95 C "C2'" . DC A 1 5 ? 0.939 1.026 1.074 1.00 11.21 ? 5 DC A "C2'" 1 ATOM 96 C "C1'" . DC A 1 5 ? 1.597 1.191 -0.306 1.00 10.47 ? 5 DC A "C1'" 1 ATOM 97 N N1 . DC A 1 5 ? 2.673 2.263 -0.196 1.00 9.75 ? 5 DC A N1 1 ATOM 98 C C2 . DC A 1 5 ? 3.990 1.812 -0.083 1.00 8.78 ? 5 DC A C2 1 ATOM 99 O O2 . DC A 1 5 ? 4.226 0.619 -0.030 1.00 11.41 ? 5 DC A O2 1 ATOM 100 N N3 . DC A 1 5 ? 4.981 2.751 -0.022 1.00 10.09 ? 5 DC A N3 1 ATOM 101 C C4 . DC A 1 5 ? 4.728 4.069 0.003 1.00 11.94 ? 5 DC A C4 1 ATOM 102 N N4 . DC A 1 5 ? 5.740 4.922 0.066 1.00 9.13 ? 5 DC A N4 1 ATOM 103 C C5 . DC A 1 5 ? 3.401 4.559 -0.142 1.00 12.50 ? 5 DC A C5 1 ATOM 104 C C6 . DC A 1 5 ? 2.441 3.618 -0.238 1.00 8.00 ? 5 DC A C6 1 ATOM 105 P P . DA A 1 6 ? -1.612 -1.877 0.368 1.00 17.67 ? 6 DA A P 1 ATOM 106 O OP1 . DA A 1 6 ? -2.085 -1.651 1.709 1.00 15.89 ? 6 DA A OP1 1 ATOM 107 O OP2 . DA A 1 6 ? -1.116 -3.188 -0.095 1.00 21.13 ? 6 DA A OP2 1 ATOM 108 O "O5'" . DA A 1 6 ? -2.662 -1.423 -0.700 1.00 15.36 ? 6 DA A "O5'" 1 ATOM 109 C "C5'" . DA A 1 6 ? -2.440 -1.726 -2.053 1.00 12.52 ? 6 DA A "C5'" 1 ATOM 110 C "C4'" . DA A 1 6 ? -3.573 -1.107 -2.824 1.00 12.46 ? 6 DA A "C4'" 1 ATOM 111 O "O4'" . DA A 1 6 ? -3.363 0.336 -2.841 1.00 11.13 ? 6 DA A "O4'" 1 ATOM 112 C "C3'" . DA A 1 6 ? -3.727 -1.490 -4.326 1.00 16.61 ? 6 DA A "C3'" 1 ATOM 113 O "O3'" . DA A 1 6 ? -5.155 -1.239 -4.815 1.00 21.77 ? 6 DA A "O3'" 1 ATOM 114 C "C2'" . DA A 1 6 ? -2.905 -0.481 -5.033 1.00 14.29 ? 6 DA A "C2'" 1 ATOM 115 C "C1'" . DA A 1 6 ? -3.219 0.760 -4.206 1.00 12.32 ? 6 DA A "C1'" 1 ATOM 116 N N9 . DA A 1 6 ? -2.176 1.773 -4.292 1.00 11.91 ? 6 DA A N9 1 ATOM 117 C C8 . DA A 1 6 ? -2.301 3.101 -4.365 1.00 17.29 ? 6 DA A C8 1 ATOM 118 N N7 . DA A 1 6 ? -1.092 3.686 -4.310 1.00 15.98 ? 6 DA A N7 1 ATOM 119 C C5 . DA A 1 6 ? -0.149 2.717 -4.211 1.00 15.86 ? 6 DA A C5 1 ATOM 120 C C6 . DA A 1 6 ? 1.303 2.687 -4.073 1.00 14.11 ? 6 DA A C6 1 ATOM 121 N N6 . DA A 1 6 ? 2.035 3.749 -4.084 1.00 13.43 ? 6 DA A N6 1 ATOM 122 N N1 . DA A 1 6 ? 1.917 1.507 -3.922 1.00 14.98 ? 6 DA A N1 1 ATOM 123 C C2 . DA A 1 6 ? 1.253 0.338 -3.848 1.00 17.05 ? 6 DA A C2 1 ATOM 124 N N3 . DA A 1 6 ? -0.092 0.302 -3.943 1.00 15.00 ? 6 DA A N3 1 ATOM 125 C C4 . DA A 1 6 ? -0.763 1.521 -4.080 1.00 12.20 ? 6 DA A C4 1 ATOM 126 O "O5'" . DT B 2 1 ? 10.602 2.258 -4.072 1.00 13.80 ? 7 DT B "O5'" 1 ATOM 127 C "C5'" . DT B 2 1 ? 10.864 1.317 -2.974 1.00 12.50 ? 7 DT B "C5'" 1 ATOM 128 C "C4'" . DT B 2 1 ? 9.672 0.367 -2.785 1.00 13.39 ? 7 DT B "C4'" 1 ATOM 129 O "O4'" . DT B 2 1 ? 8.573 1.119 -2.273 1.00 13.61 ? 7 DT B "O4'" 1 ATOM 130 C "C3'" . DT B 2 1 ? 9.110 -0.270 -4.025 1.00 13.55 ? 7 DT B "C3'" 1 ATOM 131 O "O3'" . DT B 2 1 ? 8.620 -1.603 -3.632 1.00 16.18 ? 7 DT B "O3'" 1 ATOM 132 C "C2'" . DT B 2 1 ? 7.934 0.636 -4.497 1.00 13.56 ? 7 DT B "C2'" 1 ATOM 133 C "C1'" . DT B 2 1 ? 7.405 1.072 -3.114 1.00 12.90 ? 7 DT B "C1'" 1 ATOM 134 N N1 . DT B 2 1 ? 6.768 2.422 -3.147 1.00 12.65 ? 7 DT B N1 1 ATOM 135 C C2 . DT B 2 1 ? 5.388 2.400 -3.350 1.00 15.19 ? 7 DT B C2 1 ATOM 136 O O2 . DT B 2 1 ? 4.859 1.311 -3.497 1.00 14.02 ? 7 DT B O2 1 ATOM 137 N N3 . DT B 2 1 ? 4.754 3.625 -3.441 1.00 13.03 ? 7 DT B N3 1 ATOM 138 C C4 . DT B 2 1 ? 5.383 4.824 -3.328 1.00 14.53 ? 7 DT B C4 1 ATOM 139 O O4 . DT B 2 1 ? 4.721 5.841 -3.440 1.00 15.35 ? 7 DT B O4 1 ATOM 140 C C5 . DT B 2 1 ? 6.793 4.808 -3.073 1.00 14.71 ? 7 DT B C5 1 ATOM 141 C C7 . DT B 2 1 ? 7.442 6.142 -2.722 1.00 15.93 ? 7 DT B C7 1 ATOM 142 C C6 . DT B 2 1 ? 7.459 3.625 -2.978 1.00 11.74 ? 7 DT B C6 1 ATOM 143 P P . DG B 2 2 ? 9.470 -2.908 -3.831 1.00 18.86 ? 8 DG B P 1 ATOM 144 O OP1 . DG B 2 2 ? 10.155 -2.880 -5.159 1.00 19.87 ? 8 DG B OP1 1 ATOM 145 O OP2 . DG B 2 2 ? 8.399 -3.918 -3.539 1.00 23.17 ? 8 DG B OP2 1 ATOM 146 O "O5'" . DG B 2 2 ? 10.568 -2.951 -2.717 1.00 17.52 ? 8 DG B "O5'" 1 ATOM 147 C "C5'" . DG B 2 2 ? 10.175 -2.925 -1.440 1.00 14.76 ? 8 DG B "C5'" 1 ATOM 148 C "C4'" . DG B 2 2 ? 11.385 -2.717 -0.538 1.00 17.51 ? 8 DG B "C4'" 1 ATOM 149 O "O4'" . DG B 2 2 ? 11.722 -1.353 -0.628 1.00 14.03 ? 8 DG B "O4'" 1 ATOM 150 C "C3'" . DG B 2 2 ? 11.096 -2.827 0.950 1.00 16.25 ? 8 DG B "C3'" 1 ATOM 151 O "O3'" . DG B 2 2 ? 11.342 -4.112 1.399 1.00 19.57 ? 8 DG B "O3'" 1 ATOM 152 C "C2'" . DG B 2 2 ? 11.892 -1.788 1.675 1.00 14.81 ? 8 DG B "C2'" 1 ATOM 153 C "C1'" . DG B 2 2 ? 12.139 -0.810 0.623 1.00 14.48 ? 8 DG B "C1'" 1 ATOM 154 N N9 . DG B 2 2 ? 11.467 0.452 0.685 1.00 12.88 ? 8 DG B N9 1 ATOM 155 C C8 . DG B 2 2 ? 12.034 1.656 0.765 1.00 11.15 ? 8 DG B C8 1 ATOM 156 N N7 . DG B 2 2 ? 11.292 2.687 0.718 1.00 15.10 ? 8 DG B N7 1 ATOM 157 C C5 . DG B 2 2 ? 10.013 2.101 0.672 1.00 11.51 ? 8 DG B C5 1 ATOM 158 C C6 . DG B 2 2 ? 8.726 2.693 0.558 1.00 11.35 ? 8 DG B C6 1 ATOM 159 O O6 . DG B 2 2 ? 8.435 3.871 0.569 1.00 13.64 ? 8 DG B O6 1 ATOM 160 N N1 . DG B 2 2 ? 7.683 1.735 0.478 1.00 12.68 ? 8 DG B N1 1 ATOM 161 C C2 . DG B 2 2 ? 7.883 0.362 0.417 1.00 13.81 ? 8 DG B C2 1 ATOM 162 N N2 . DG B 2 2 ? 6.829 -0.464 0.348 1.00 11.02 ? 8 DG B N2 1 ATOM 163 N N3 . DG B 2 2 ? 9.097 -0.212 0.568 1.00 12.40 ? 8 DG B N3 1 ATOM 164 C C4 . DG B 2 2 ? 10.112 0.730 0.632 1.00 12.34 ? 8 DG B C4 1 ATOM 165 P P A DC B 2 3 ? 11.248 -4.592 2.962 0.57 14.78 ? 9 DC B P 1 ATOM 166 P P B DC B 2 3 ? 10.230 -5.205 1.833 0.43 14.76 ? 9 DC B P 1 ATOM 167 O OP1 A DC B 2 3 ? 11.959 -3.686 3.885 0.57 14.89 ? 9 DC B OP1 1 ATOM 168 O OP1 B DC B 2 3 ? 10.946 -6.438 2.352 0.43 14.36 ? 9 DC B OP1 1 ATOM 169 O OP2 A DC B 2 3 ? 11.563 -6.042 2.924 0.46 16.29 ? 9 DC B OP2 1 ATOM 170 O OP2 B DC B 2 3 ? 9.143 -5.298 0.801 0.54 16.94 ? 9 DC B OP2 1 ATOM 171 O "O5'" . DC B 2 3 ? 9.700 -4.471 3.175 1.00 15.39 ? 9 DC B "O5'" 1 ATOM 172 C "C5'" . DC B 2 3 ? 9.005 -5.188 4.181 1.00 11.51 ? 9 DC B "C5'" 1 ATOM 173 C "C4'" . DC B 2 3 ? 7.598 -4.604 4.385 1.00 10.59 ? 9 DC B "C4'" 1 ATOM 174 O "O4'" . DC B 2 3 ? 7.654 -3.260 4.883 1.00 12.29 ? 9 DC B "O4'" 1 ATOM 175 C "C3'" . DC B 2 3 ? 6.743 -4.568 3.174 1.00 11.72 ? 9 DC B "C3'" 1 ATOM 176 O "O3'" . DC B 2 3 ? 5.440 -4.894 3.659 1.00 15.65 ? 9 DC B "O3'" 1 ATOM 177 C "C2'" . DC B 2 3 ? 6.837 -3.126 2.781 1.00 10.36 ? 9 DC B "C2'" 1 ATOM 178 C "C1'" . DC B 2 3 ? 6.819 -2.462 4.107 1.00 10.97 ? 9 DC B "C1'" 1 ATOM 179 N N1 . DC B 2 3 ? 7.428 -1.089 4.085 1.00 8.37 ? 9 DC B N1 1 ATOM 180 C C2 . DC B 2 3 ? 6.555 0.023 3.944 1.00 9.80 ? 9 DC B C2 1 ATOM 181 O O2 . DC B 2 3 ? 5.363 -0.181 3.911 1.00 11.88 ? 9 DC B O2 1 ATOM 182 N N3 . DC B 2 3 ? 7.068 1.261 3.938 1.00 10.85 ? 9 DC B N3 1 ATOM 183 C C4 . DC B 2 3 ? 8.432 1.404 4.008 1.00 11.09 ? 9 DC B C4 1 ATOM 184 N N4 . DC B 2 3 ? 8.997 2.649 3.989 1.00 10.96 ? 9 DC B N4 1 ATOM 185 C C5 . DC B 2 3 ? 9.348 0.297 4.122 1.00 11.64 ? 9 DC B C5 1 ATOM 186 C C6 . DC B 2 3 ? 8.799 -0.900 4.139 1.00 10.02 ? 9 DC B C6 1 ATOM 187 P P . DG B 2 4 ? 4.885 -6.400 3.528 1.00 19.96 ? 10 DG B P 1 ATOM 188 O OP1 . DG B 2 4 ? 5.622 -7.072 2.466 1.00 20.21 ? 10 DG B OP1 1 ATOM 189 O OP2 . DG B 2 4 ? 3.470 -6.253 3.617 1.00 17.87 ? 10 DG B OP2 1 ATOM 190 O "O5'" . DG B 2 4 ? 5.452 -7.138 4.852 1.00 15.52 ? 10 DG B "O5'" 1 ATOM 191 C "C5'" . DG B 2 4 ? 5.048 -6.811 6.128 1.00 11.18 ? 10 DG B "C5'" 1 ATOM 192 C "C4'" . DG B 2 4 ? 5.934 -7.620 7.026 1.00 9.93 ? 10 DG B "C4'" 1 ATOM 193 O "O4'" . DG B 2 4 ? 7.297 -7.242 6.786 1.00 11.36 ? 10 DG B "O4'" 1 ATOM 194 C "C3'" . DG B 2 4 ? 5.701 -7.181 8.457 1.00 14.68 ? 10 DG B "C3'" 1 ATOM 195 O "O3'" . DG B 2 4 ? 4.776 -8.125 9.118 1.00 14.26 ? 10 DG B "O3'" 1 ATOM 196 C "C2'" . DG B 2 4 ? 7.000 -7.243 9.149 1.00 14.33 ? 10 DG B "C2'" 1 ATOM 197 C "C1'" . DG B 2 4 ? 8.014 -7.153 8.016 1.00 10.87 ? 10 DG B "C1'" 1 ATOM 198 N N9 . DG B 2 4 ? 8.740 -5.905 7.999 1.00 9.36 ? 10 DG B N9 1 ATOM 199 C C8 . DG B 2 4 ? 10.073 -5.819 7.960 1.00 9.48 ? 10 DG B C8 1 ATOM 200 N N7 . DG B 2 4 ? 10.546 -4.620 7.923 1.00 13.14 ? 10 DG B N7 1 ATOM 201 C C5 . DG B 2 4 ? 9.359 -3.798 7.892 1.00 10.50 ? 10 DG B C5 1 ATOM 202 C C6 . DG B 2 4 ? 9.153 -2.415 7.857 1.00 11.26 ? 10 DG B C6 1 ATOM 203 O O6 . DG B 2 4 ? 10.055 -1.534 7.759 1.00 13.79 ? 10 DG B O6 1 ATOM 204 N N1 . DG B 2 4 ? 7.813 -2.062 7.882 1.00 8.61 ? 10 DG B N1 1 ATOM 205 C C2 . DG B 2 4 ? 6.726 -2.945 7.861 1.00 8.81 ? 10 DG B C2 1 ATOM 206 N N2 . DG B 2 4 ? 5.454 -2.416 7.829 1.00 11.30 ? 10 DG B N2 1 ATOM 207 N N3 . DG B 2 4 ? 6.900 -4.260 7.940 1.00 9.79 ? 10 DG B N3 1 ATOM 208 C C4 . DG B 2 4 ? 8.218 -4.604 7.922 1.00 8.58 ? 10 DG B C4 1 ATOM 209 P P A DC B 2 5 ? 4.467 -8.102 10.711 0.47 13.96 ? 11 DC B P 1 ATOM 210 P P B DC B 2 5 ? 3.233 -7.669 9.505 0.53 14.00 ? 11 DC B P 1 ATOM 211 O OP1 A DC B 2 5 ? 5.643 -7.857 11.562 0.58 14.95 ? 11 DC B OP1 1 ATOM 212 O OP1 B DC B 2 5 ? 2.598 -8.907 10.023 0.42 15.10 ? 11 DC B OP1 1 ATOM 213 O OP2 A DC B 2 5 ? 3.676 -9.339 10.938 0.42 14.37 ? 11 DC B OP2 1 ATOM 214 O OP2 B DC B 2 5 ? 2.504 -6.847 8.500 0.58 13.69 ? 11 DC B OP2 1 ATOM 215 O "O5'" . DC B 2 5 ? 3.570 -6.764 10.736 1.00 14.55 ? 11 DC B "O5'" 1 ATOM 216 C "C5'" . DC B 2 5 ? 2.600 -6.509 11.821 1.00 11.58 ? 11 DC B "C5'" 1 ATOM 217 C "C4'" . DC B 2 5 ? 2.367 -5.014 12.044 1.00 13.30 ? 11 DC B "C4'" 1 ATOM 218 O "O4'" . DC B 2 5 ? 3.613 -4.443 12.444 1.00 15.44 ? 11 DC B "O4'" 1 ATOM 219 C "C3'" . DC B 2 5 ? 1.992 -4.247 10.809 1.00 15.14 ? 11 DC B "C3'" 1 ATOM 220 O "O3'" . DC B 2 5 ? 1.127 -3.193 11.224 1.00 14.19 ? 11 DC B "O3'" 1 ATOM 221 C "C2'" . DC B 2 5 ? 3.271 -3.583 10.358 1.00 12.31 ? 11 DC B "C2'" 1 ATOM 222 C "C1'" . DC B 2 5 ? 3.881 -3.286 11.662 1.00 11.71 ? 11 DC B "C1'" 1 ATOM 223 N N1 . DC B 2 5 ? 5.349 -3.175 11.595 1.00 10.85 ? 11 DC B N1 1 ATOM 224 C C2 . DC B 2 5 ? 5.943 -1.892 11.425 1.00 11.45 ? 11 DC B C2 1 ATOM 225 O O2 . DC B 2 5 ? 5.178 -0.906 11.412 1.00 13.95 ? 11 DC B O2 1 ATOM 226 N N3 . DC B 2 5 ? 7.265 -1.784 11.320 1.00 11.81 ? 11 DC B N3 1 ATOM 227 C C4 . DC B 2 5 ? 8.124 -2.821 11.326 1.00 10.77 ? 11 DC B C4 1 ATOM 228 N N4 . DC B 2 5 ? 9.425 -2.680 11.200 1.00 14.57 ? 11 DC B N4 1 ATOM 229 C C5 . DC B 2 5 ? 7.586 -4.167 11.488 1.00 13.07 ? 11 DC B C5 1 ATOM 230 C C6 . DC B 2 5 ? 6.232 -4.246 11.572 1.00 12.67 ? 11 DC B C6 1 ATOM 231 P P . DG B 2 6 ? -0.464 -3.370 11.066 1.00 21.12 ? 12 DG B P 1 ATOM 232 O OP1 . DG B 2 6 ? -0.821 -3.967 9.789 1.00 18.64 ? 12 DG B OP1 1 ATOM 233 O OP2 . DG B 2 6 ? -0.916 -2.063 11.575 1.00 25.25 ? 12 DG B OP2 1 ATOM 234 O "O5'" . DG B 2 6 ? -0.978 -4.422 12.194 1.00 17.95 ? 12 DG B "O5'" 1 ATOM 235 C "C5'" . DG B 2 6 ? -1.131 -4.004 13.440 1.00 15.16 ? 12 DG B "C5'" 1 ATOM 236 C "C4'" . DG B 2 6 ? -1.463 -5.245 14.260 1.00 13.30 ? 12 DG B "C4'" 1 ATOM 237 O "O4'" . DG B 2 6 ? -0.326 -6.100 14.305 1.00 14.65 ? 12 DG B "O4'" 1 ATOM 238 C "C3'" . DG B 2 6 ? -1.876 -4.918 15.685 1.00 16.19 ? 12 DG B "C3'" 1 ATOM 239 O "O3'" . DG B 2 6 ? -2.740 -5.926 16.262 1.00 18.27 ? 12 DG B "O3'" 1 ATOM 240 C "C2'" . DG B 2 6 ? -0.569 -5.055 16.392 1.00 11.38 ? 12 DG B "C2'" 1 ATOM 241 C "C1'" . DG B 2 6 ? 0.121 -6.196 15.638 1.00 15.03 ? 12 DG B "C1'" 1 ATOM 242 N N9 . DG B 2 6 ? 1.558 -6.160 15.617 1.00 15.44 ? 12 DG B N9 1 ATOM 243 C C8 . DG B 2 6 ? 2.349 -7.278 15.717 1.00 17.57 ? 12 DG B C8 1 ATOM 244 N N7 . DG B 2 6 ? 3.584 -6.952 15.642 1.00 16.32 ? 12 DG B N7 1 ATOM 245 C C5 . DG B 2 6 ? 3.678 -5.566 15.486 1.00 17.09 ? 12 DG B C5 1 ATOM 246 C C6 . DG B 2 6 ? 4.732 -4.593 15.326 1.00 17.64 ? 12 DG B C6 1 ATOM 247 O O6 . DG B 2 6 ? 5.952 -4.757 15.253 1.00 21.17 ? 12 DG B O6 1 ATOM 248 N N1 . DG B 2 6 ? 4.341 -3.302 15.176 1.00 14.80 ? 12 DG B N1 1 ATOM 249 C C2 . DG B 2 6 ? 3.053 -2.899 15.160 1.00 13.19 ? 12 DG B C2 1 ATOM 250 N N2 . DG B 2 6 ? 2.799 -1.581 14.969 1.00 18.75 ? 12 DG B N2 1 ATOM 251 N N3 . DG B 2 6 ? 2.038 -3.769 15.315 1.00 16.56 ? 12 DG B N3 1 ATOM 252 C C4 . DG B 2 6 ? 2.413 -5.083 15.458 1.00 13.27 ? 12 DG B C4 1 HETATM 253 N N1 . NRU C 3 . ? -1.585 6.592 -3.511 0.70 28.53 ? 13 NRU A N1 1 HETATM 254 RU RU . NRU C 3 . ? 0.289 7.363 -3.918 0.70 30.18 ? 13 NRU A RU 1 HETATM 255 N N4 . NRU C 3 . ? 1.152 6.125 -2.450 0.70 30.75 ? 13 NRU A N4 1 HETATM 256 N N5 . NRU C 3 . ? 0.015 8.988 -2.626 0.70 29.16 ? 13 NRU A N5 1 HETATM 257 N N2 . NRU C 3 . ? 2.196 8.093 -4.426 0.70 28.96 ? 13 NRU A N2 1 HETATM 258 N N3 . NRU C 3 . ? -0.665 8.530 -5.390 0.70 27.40 ? 13 NRU A N3 1 HETATM 259 N N6 . NRU C 3 . ? 0.533 5.821 -5.299 0.70 32.13 ? 13 NRU A N6 1 HETATM 260 O O . HOH D 4 . ? 3.872 3.644 11.857 1.00 20.74 ? 15 HOH A O 1 HETATM 261 O O . HOH D 4 . ? 0.684 1.020 4.320 1.00 18.71 ? 18 HOH A O 1 HETATM 262 O O . HOH D 4 . ? 0.634 7.287 10.053 1.00 18.26 ? 19 HOH A O 1 HETATM 263 O O . HOH D 4 . ? 2.401 8.068 -0.535 1.00 38.59 ? 21 HOH A O 1 HETATM 264 O O . HOH D 4 . ? 2.768 -0.142 9.152 1.00 25.98 ? 24 HOH A O 1 HETATM 265 O O . HOH D 4 . ? 10.489 5.471 6.902 1.00 26.58 ? 25 HOH A O 1 HETATM 266 O O . HOH D 4 . ? 7.275 10.325 10.547 1.00 28.35 ? 26 HOH A O 1 HETATM 267 O O . HOH D 4 . ? 0.136 0.364 6.688 1.00 27.39 ? 28 HOH A O 1 HETATM 268 O O . HOH D 4 . ? 10.683 4.341 17.774 1.00 31.00 ? 29 HOH A O 1 HETATM 269 O O . HOH D 4 . ? 8.274 3.290 19.463 1.00 26.02 ? 33 HOH A O 1 HETATM 270 O O . HOH D 4 . ? 4.310 -1.457 -2.235 1.00 27.58 ? 36 HOH A O 1 HETATM 271 O O . HOH D 4 . ? 13.531 1.966 14.053 1.00 43.49 ? 37 HOH A O 1 HETATM 272 O O . HOH D 4 . ? 11.774 3.297 6.880 1.00 25.66 ? 38 HOH A O 1 HETATM 273 O O . HOH D 4 . ? 5.062 7.513 -0.078 1.00 42.92 ? 43 HOH A O 1 HETATM 274 O O . HOH D 4 . ? 5.147 10.602 11.132 1.00 41.72 ? 48 HOH A O 1 HETATM 275 O O . HOH D 4 . ? 4.149 1.122 16.737 1.00 39.46 ? 54 HOH A O 1 HETATM 276 O O . HOH D 4 . ? 8.821 -6.351 14.656 0.50 24.11 ? 59 HOH A O 1 HETATM 277 O O . HOH D 4 . ? 14.098 2.181 10.760 0.50 23.46 ? 61 HOH A O 1 HETATM 278 O O . HOH E 4 . ? 6.767 -3.560 -0.552 1.00 16.73 ? 14 HOH B O 1 HETATM 279 O O . HOH E 4 . ? 2.968 -4.039 7.072 1.00 20.48 ? 16 HOH B O 1 HETATM 280 O O . HOH E 4 . ? 11.619 1.195 -6.582 1.00 16.40 ? 17 HOH B O 1 HETATM 281 O O . HOH E 4 . ? 3.045 -0.934 5.596 1.00 23.47 ? 20 HOH B O 1 HETATM 282 O O . HOH E 4 . ? 3.658 -1.443 2.017 1.00 20.50 ? 22 HOH B O 1 HETATM 283 O O . HOH E 4 . ? 8.835 -8.692 4.585 1.00 23.89 ? 23 HOH B O 1 HETATM 284 O O . HOH E 4 . ? 12.098 3.046 3.998 1.00 27.06 ? 27 HOH B O 1 HETATM 285 O O . HOH E 4 . ? -0.052 -0.622 14.116 1.00 27.92 ? 30 HOH B O 1 HETATM 286 O O . HOH E 4 . ? 14.413 0.215 2.596 1.00 38.27 ? 31 HOH B O 1 HETATM 287 O O . HOH E 4 . ? 4.608 -10.339 2.763 1.00 27.70 ? 32 HOH B O 1 HETATM 288 O O . HOH E 4 . ? 4.013 -8.750 18.501 1.00 34.87 ? 34 HOH B O 1 HETATM 289 O O . HOH E 4 . ? 3.453 0.747 13.236 1.00 28.00 ? 35 HOH B O 1 HETATM 290 O O . HOH E 4 . ? 13.410 -6.208 0.405 1.00 32.35 ? 39 HOH B O 1 HETATM 291 O O . HOH E 4 . ? 6.359 -6.029 -0.700 1.00 42.94 ? 40 HOH B O 1 HETATM 292 O O . HOH E 4 . ? 8.651 -6.454 -3.051 1.00 41.19 ? 41 HOH B O 1 HETATM 293 O O . HOH E 4 . ? 12.147 4.726 1.809 1.00 29.14 ? 42 HOH B O 1 HETATM 294 O O . HOH E 4 . ? 2.093 -9.017 3.546 1.00 35.22 ? 44 HOH B O 1 HETATM 295 O O . HOH E 4 . ? 14.631 -1.316 8.186 1.00 39.82 ? 45 HOH B O 1 HETATM 296 O O . HOH E 4 . ? -2.485 -6.374 10.737 1.00 35.09 ? 46 HOH B O 1 HETATM 297 O O . HOH E 4 . ? 0.047 -9.501 9.850 1.00 36.87 ? 47 HOH B O 1 HETATM 298 O O . HOH E 4 . ? 14.889 -3.709 3.266 1.00 33.73 ? 49 HOH B O 1 HETATM 299 O O . HOH E 4 . ? -3.397 -4.342 18.479 1.00 20.21 ? 50 HOH B O 1 HETATM 300 O O . HOH E 4 . ? 3.323 -10.909 5.613 1.00 31.25 ? 51 HOH B O 1 HETATM 301 O O . HOH E 4 . ? 10.897 5.416 -1.125 1.00 45.41 ? 52 HOH B O 1 HETATM 302 O O . HOH E 4 . ? 15.952 -1.652 5.751 1.00 53.60 ? 53 HOH B O 1 HETATM 303 O O . HOH E 4 . ? 0.364 -2.847 7.338 1.00 31.35 ? 55 HOH B O 1 HETATM 304 O O . HOH E 4 . ? 6.383 -7.580 14.143 1.00 29.39 ? 56 HOH B O 1 HETATM 305 O O . HOH E 4 . ? 12.381 -0.377 5.163 1.00 38.04 ? 57 HOH B O 1 HETATM 306 O O . HOH E 4 . ? 8.722 6.671 0.678 0.50 22.51 ? 58 HOH B O 1 HETATM 307 O O . HOH E 4 . ? 3.868 -11.759 10.239 0.50 22.44 ? 60 HOH B O 1 #
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