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STRUCTURAL
CHEMISTRY
Volume 81
|
Part 3
|
March 2025
|
Pages 116–130
https://doi.org/10.1107/S2053229624012300
Open
access
ISSN: 2053-2296
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STRUCTURAL
CHEMISTRY
Volume 81
|
Part 3
|
March 2025
|
Pages 116–130
https://doi.org/10.1107/S2053229624012300
Open
access
ISSN: 2053-2296
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data_9CQ0 # _entry.id 9CQ0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.403 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9CQ0 pdb_00009cq0 10.2210/pdb9cq0/pdb WWPDB D_1000285886 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-06-04 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9CQ0 _pdbx_database_status.recvd_initial_deposition_date 2024-07-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email jrodriguez@mbi.ucla.edu _pdbx_contact_author.name_first Jose _pdbx_contact_author.name_last Rodriguez _pdbx_contact_author.name_mi A _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0248-4964 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Vlahakis, N.W.' 1 0000-0002-5092-0265 'Qu, S.' 2 ? 'Richards, L.S.' 3 ? 'deMoraes, L.S.' 4 ? 'Nelson, H.M.' 5 ? 'Rodriguez, J.A.' 6 0000-0002-0248-4964 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acta Crystallogr.,Sect.C' _citation.journal_id_ASTM ACSCGG _citation.journal_id_CSD ? _citation.journal_id_ISSN 2053-2296 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 81 _citation.language ? _citation.page_first 116 _citation.page_last 130 _citation.title 'Fast event-based electron counting for small-molecule structure determination by MicroED.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1107/S2053229624012300 _citation.pdbx_database_id_PubMed 39982366 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vlahakis, N.' 1 0000-0002-5092-0265 primary 'Qu, S.' 2 0000-0002-1179-6468 primary 'Richards, L.S.' 3 ? primary 'Moraes, L.S.' 4 ? primary 'Cascio, D.' 5 ? primary 'Nelson, H.M.' 6 ? primary 'Rodriguez, J.A.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Thiostrepton 1805.985 1 ? ? ? ? 2 water nat water 18.015 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(QUA)IA(DHA)AS(BB9)T(DBU)(DCY)(TS9)(BB9)T(BB9)(MH6)(BB9)(DHA)(DHA)(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XIASASCTTCICTCSCSSX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 QUA n 1 2 ILE n 1 3 ALA n 1 4 DHA n 1 5 ALA n 1 6 SER n 1 7 BB9 n 1 8 THR n 1 9 DBU n 1 10 DCY n 1 11 TS9 n 1 12 BB9 n 1 13 THR n 1 14 BB9 n 1 15 MH6 n 1 16 BB9 n 1 17 DHA n 1 18 DHA n 1 19 NH2 n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 19 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Streptomyces azureus' _entity_src_nat.pdbx_ncbi_taxonomy_id 146537 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 BB9 'peptide linking' n '(2Z)-2-amino-3-sulfanylprop-2-enoic acid' ? 'C3 H5 N O2 S' 119.142 DBU 'peptide linking' n '(2Z)-2-AMINOBUT-2-ENOIC ACID' Z-DEHYDROBUTYRINE 'C4 H7 N O2' 101.104 DCY 'D-peptide linking' . D-CYSTEINE ? 'C3 H7 N O2 S' 121.158 DHA 'peptide linking' n '2-AMINO-ACRYLIC ACID' 2,3-DIDEHYDROALANINE 'C3 H5 N O2' 87.077 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 MH6 'peptide linking' n '3-hydroxy-2-iminopropanoic acid' ? 'C3 H5 N O3' 103.077 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 QUA non-polymer . '8-HYDROXY-4-(1-HYDROXYETHYL)QUINOLINE-2-CARBOXYLIC ACID' ? 'C12 H13 N O4' 235.236 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TS9 'L-peptide linking' n '(2S,3S,4R)-2-amino-3,4-dihydroxy-3-methylpentanoic acid' ? 'C6 H13 N O4' 163.172 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 QUA 1 1 0 QUA QUA A . n A 1 2 ILE 2 2 1 ILE ILE A . n A 1 3 ALA 3 3 2 ALA ALA A . n A 1 4 DHA 4 4 3 DHA DHA A . n A 1 5 ALA 5 5 4 ALA ALA A . n A 1 6 SER 6 6 5 SER SER A . n A 1 7 BB9 7 7 6 BB9 BB9 A . n A 1 8 THR 8 8 7 THR THR A . n A 1 9 DBU 9 9 8 DBU DBU A . n A 1 10 DCY 10 10 9 DCY DCY A . n A 1 11 TS9 11 11 10 TS9 TS9 A . n A 1 12 BB9 12 12 11 BB9 BB9 A . n A 1 13 THR 13 13 12 THR THR A . n A 1 14 BB9 14 14 13 BB9 BB9 A . n A 1 15 MH6 15 15 14 MH6 MH6 A . n A 1 16 BB9 16 16 15 BB9 BB9 A . n A 1 17 DHA 17 17 16 DHA DHA A . n A 1 18 DHA 18 18 17 DHA DHA A . n A 1 19 NH2 19 19 18 NH2 NH2 A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 2001 2001 HOH HOH A . B 2 HOH 2 2002 2004 HOH HOH A . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9CQ0 _cell.details ? _cell.formula_units_Z ? _cell.length_a 26.470 _cell.length_a_esd ? _cell.length_b 26.470 _cell.length_b_esd ? _cell.length_c 27.290 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9CQ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9CQ0 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9CQ0 _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.50 _refine.ls_d_res_low 18.72 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 1738 _refine.ls_number_reflns_R_free 174 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.60 _refine.ls_percent_reflns_R_free 10.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2026 _refine.ls_R_factor_R_free 0.2167 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2013 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 16.39 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.07 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON CRYSTALLOGRAPHY' ? 0.015 ? 113 ? f_bond_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 4.400 ? 153 ? f_angle_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 22.852 ? 27 ? f_dihedral_angle_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.057 ? 15 ? f_chiral_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.049 ? 20 ? f_plane_restr ? ? # _refine_ls_shell.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 18.72 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 174 _refine_ls_shell.number_reflns_R_work 1564 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2013 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.2167 # _struct.entry_id 9CQ0 _struct.title 'Event-based electron counting microED structure of thiostrepton from a single crystal' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9CQ0 _struct_keywords.text 'Cyclic, macrocycle, ANTIBIOTIC' _struct_keywords.pdbx_keywords ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9CQ0 _struct_ref.pdbx_db_accession 9CQ0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9CQ0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 19 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9CQ0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 19 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 19 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 400 ? 1 MORE 1 ? 1 'SSA (A^2)' 1650 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A QUA 1 C7 ? ? ? 1_555 A ILE 2 N ? ? A QUA 1 A ILE 2 1_555 ? ? ? ? ? ? ? 1.436 ? ? covale2 covale one ? A QUA 1 C11 ? ? ? 1_555 A THR 13 OG1 ? ? A QUA 1 A THR 13 1_555 ? ? ? ? ? ? ? 1.372 ? ? covale3 covale both ? A ALA 3 C ? ? ? 1_555 A DHA 4 N ? ? A ALA 3 A DHA 4 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale4 covale both ? A DHA 4 C ? ? ? 1_555 A ALA 5 N ? ? A DHA 4 A ALA 5 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale5 covale both ? A SER 6 C ? ? ? 1_555 A BB9 7 N ? ? A SER 6 A BB9 7 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale6 covale one ? A SER 6 C ? ? ? 1_555 A BB9 7 SG ? ? A SER 6 A BB9 7 1_555 ? ? ? ? ? ? ? 1.696 ? ? covale7 covale one ? A SER 6 CA ? ? ? 1_555 A BB9 14 C ? ? A SER 6 A BB9 14 1_555 ? ? ? ? ? ? ? 1.497 ? ? covale8 covale one ? A SER 6 CB ? ? ? 1_555 A MH6 15 CB ? ? A SER 6 A MH6 15 1_555 ? ? ? ? ? ? ? 1.487 ? ? covale9 covale both ? A BB9 7 C ? ? ? 1_555 A THR 8 N ? ? A BB9 7 A THR 8 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale10 covale both ? A THR 8 C ? ? ? 1_555 A DBU 9 N ? ? A THR 8 A DBU 9 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale11 covale both ? A DBU 9 C ? ? ? 1_555 A DCY 10 N ? ? A DBU 9 A DCY 10 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale12 covale one ? A DBU 9 C ? ? ? 1_555 A DCY 10 SG ? ? A DBU 9 A DCY 10 1_555 ? ? ? ? ? ? ? 1.704 ? ? covale13 covale both ? A DCY 10 C ? ? ? 1_555 A TS9 11 N ? ? A DCY 10 A TS9 11 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale14 covale both ? A TS9 11 C ? ? ? 1_555 A BB9 12 N ? ? A TS9 11 A BB9 12 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale15 covale one ? A TS9 11 C ? ? ? 1_555 A BB9 12 SG ? ? A TS9 11 A BB9 12 1_555 ? ? ? ? ? ? ? 1.709 ? ? covale16 covale both ? A BB9 12 C ? ? ? 1_555 A THR 13 N ? ? A BB9 12 A THR 13 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale17 covale one ? A THR 13 C ? ? ? 1_555 A BB9 14 SG ? ? A THR 13 A BB9 14 1_555 ? ? ? ? ? ? ? 1.691 ? ? covale18 covale both ? A THR 13 C ? ? ? 1_555 A BB9 14 N ? ? A THR 13 A BB9 14 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale19 covale both ? A BB9 14 C ? ? ? 1_555 A MH6 15 N ? ? A BB9 14 A MH6 15 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale20 covale both ? A MH6 15 C ? ? ? 1_555 A BB9 16 N ? ? A MH6 15 A BB9 16 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale21 covale one ? A MH6 15 C ? ? ? 1_555 A BB9 16 SG ? ? A MH6 15 A BB9 16 1_555 ? ? ? ? ? ? ? 1.701 ? ? covale22 covale both ? A BB9 16 C ? ? ? 1_555 A DHA 17 N ? ? A BB9 16 A DHA 17 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale23 covale both ? A DHA 17 C ? ? ? 1_555 A DHA 18 N ? ? A DHA 17 A DHA 18 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale24 covale both ? A DHA 18 C ? ? ? 1_555 A NH2 19 N ? ? A DHA 18 A NH2 19 1_555 ? ? ? ? ? ? ? 1.340 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 DHA A 4 ? . . . . DHA A 4 ? 1_555 . . . . . . . SER 1 DHA 'Dehydroamino acid' 'Named protein modification' 2 DBU A 9 ? . . . . DBU A 9 ? 1_555 . . . . . . . THR 1 DBU 'Dehydroamino acid' 'Named protein modification' 3 TS9 A 11 ? . . . . TS9 A 11 ? 1_555 . . . . . . . ILE 1 TS9 Hydroxylation 'Named protein modification' 4 MH6 A 15 ? . . . . MH6 A 15 ? 1_555 . . . . . . . SER 1 MH6 Dehydrogenation 'Named protein modification' 5 DHA A 17 ? . . . . DHA A 17 ? 1_555 . . . . . . . SER 1 DHA 'Dehydroamino acid' 'Named protein modification' 6 DHA A 18 ? . . . . DHA A 18 ? 1_555 . . . . . . . SER 1 DHA 'Dehydroamino acid' 'Named protein modification' 7 QUA A 1 ? . . . . QUA A 1 ? 1_555 . . . . . . . ? 1 QUA None 'Non-standard residue' 8 BB9 A 7 ? . . . . BB9 A 7 ? 1_555 . . . . . . . CYS 1 BB9 None 'Non-standard residue' 9 BB9 A 12 ? . . . . BB9 A 12 ? 1_555 . . . . . . . CYS 1 BB9 None 'Non-standard residue' 10 BB9 A 14 ? . . . . BB9 A 14 ? 1_555 . . . . . . . CYS 1 BB9 None 'Non-standard residue' 11 BB9 A 16 ? . . . . BB9 A 16 ? 1_555 . . . . . . . CYS 1 BB9 None 'Non-standard residue' 12 NH2 A 19 ? DHA A 18 ? NH2 A 19 ? 1_555 DHA A 18 ? 1_555 . . DHA 42 NH2 None 'Terminal amidation' 13 QUA A 1 ? THR A 13 ? QUA A 1 ? 1_555 THR A 13 ? 1_555 C11 OG1 . . . None 'Non-standard linkage' 14 SER A 6 ? BB9 A 7 ? SER A 6 ? 1_555 BB9 A 7 ? 1_555 C SG . . . None 'Non-standard linkage' 15 SER A 6 ? BB9 A 14 ? SER A 6 ? 1_555 BB9 A 14 ? 1_555 CA C . . . None 'Non-standard linkage' 16 SER A 6 ? MH6 A 15 ? SER A 6 ? 1_555 MH6 A 15 ? 1_555 CB CB . . . None 'Non-standard linkage' 17 DBU A 9 ? DCY A 10 ? DBU A 9 ? 1_555 DCY A 10 ? 1_555 C SG . . . None 'Non-standard linkage' 18 TS9 A 11 ? BB9 A 12 ? TS9 A 11 ? 1_555 BB9 A 12 ? 1_555 C SG . . . None 'Non-standard linkage' 19 THR A 13 ? BB9 A 14 ? THR A 13 ? 1_555 BB9 A 14 ? 1_555 C SG . . . None 'Non-standard linkage' 20 MH6 A 15 ? BB9 A 16 ? MH6 A 15 ? 1_555 BB9 A 16 ? 1_555 C SG . . . None 'Non-standard linkage' # _pdbx_entry_details.entry_id 9CQ0 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ;THIOSTREPTON IS A MEMBER OF A SULPHUR-RICH HETEROCYCLIC PEPTIDES CLASS. ALL SHARE A MACROCYLIC CORE, CONSISTING OF A NITROGEN CONTAINING, SIX-MEMBERED RING CENTRAL TO DEHYDROAMINO ACIDS AND A SUBSET OF FIVE MEMBER RING STRUCTURES INCLUDING THIAZOLES, THIAZOLINES AND OXAZOLES. HERE, THIOSTREPTON IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 6 ? ? 64.05 83.13 2 1 DCY A 10 ? ? -142.83 -16.62 3 1 TS9 A 11 ? ? -106.07 -60.86 # _pdbx_molecule_features.prd_id PRD_000223 _pdbx_molecule_features.name THIOSTREPTON _pdbx_molecule_features.type Thiopeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;Thiostrepton is a hetrocyclic thiopeptide belonging to the thiocillin family, consisting of four thiazole, one thiozoline and one piperideine rings. A modified quinoline linked to main-chain residue 1 and side-chain of residue 12. Post translational maturation of thiazole and oxazole containing antibiotics involves the enzymic condensation of a Cys or Ser with the alpha-carbonyl of the preceding amino acid to form a thioether or ether bond, then dehydration to form a double bond with the alpha-amino nitrogen. Thiazoline or oxazoline ring are dehydrogenated to form thiazole or oxazole rings. the pyridinyl involves the cross-linking of a Ser and a Cys-Ser pair usually separated by 7 or 8 residues along the peptide chain. The Ser residues are dehydrated to didehydroalanines, then bonded between their beta carbons. The alpha carbonyl of the Cys condenses with alpha carbon of the first Ser to form a pyridinyl ring. The ring may be mutiply dehydrogenated to form a pyridine ring with loss of the amino nitrogen of the first Ser. The amidation of Ser-17 probably does not occur by the same mechanism, oxidative cleavage of glycine, as in eukaryotes. ; # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000223 _pdbx_molecule.asym_id A # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2001 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9CQ0 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 13.09 _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 1E9W _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 1E9W _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 9CQ0 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 1.5 _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type '3D CRYSTAL' # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '24:1 chloroform/isoamyl alcohol' _em_buffer.pH 7 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Microcrystal of thiostrepton' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_image_scans.entry_id 9CQ0 _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height 4096 _em_image_scans.dimension_width 4096 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image ? # _em_imaging.entry_id 9CQ0 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TALOS ARCTICA' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 200 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 0 _em_imaging.nominal_defocus_max 0 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum 100 _em_imaging.recording_temperature_maximum 100 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 70 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_experiment.entry_id 9CQ0 _em_experiment.id 1 _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.aggregation_state '3D ARRAY' _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 BB9 N N N N 14 BB9 CA C N N 15 BB9 C C N N 16 BB9 O O N N 17 BB9 CB C N N 18 BB9 SG S N N 19 BB9 OXT O N N 20 BB9 H H N N 21 BB9 H2 H N N 22 BB9 HB H N N 23 BB9 HXT H N N 24 BB9 HG H N N 25 DBU N N N N 26 DBU CA C N N 27 DBU CB C N N 28 DBU CG C N N 29 DBU C C N N 30 DBU O O N N 31 DBU OXT O N N 32 DBU H H N N 33 DBU H2 H N N 34 DBU HB H N N 35 DBU HG1 H N N 36 DBU HG2 H N N 37 DBU HG3 H N N 38 DBU HXT H N N 39 DCY N N N N 40 DCY CA C N S 41 DCY C C N N 42 DCY O O N N 43 DCY CB C N N 44 DCY SG S N N 45 DCY OXT O N N 46 DCY H H N N 47 DCY H2 H N N 48 DCY HA H N N 49 DCY HB2 H N N 50 DCY HB3 H N N 51 DCY HG H N N 52 DCY HXT H N N 53 DHA N N N N 54 DHA CA C N N 55 DHA CB C N N 56 DHA C C N N 57 DHA O O N N 58 DHA OXT O N N 59 DHA H H N N 60 DHA H2 H N N 61 DHA HB1 H N N 62 DHA HB2 H N N 63 DHA HXT H N N 64 HOH O O N N 65 HOH H1 H N N 66 HOH H2 H N N 67 ILE N N N N 68 ILE CA C N S 69 ILE C C N N 70 ILE O O N N 71 ILE CB C N S 72 ILE CG1 C N N 73 ILE CG2 C N N 74 ILE CD1 C N N 75 ILE OXT O N N 76 ILE H H N N 77 ILE H2 H N N 78 ILE HA H N N 79 ILE HB H N N 80 ILE HG12 H N N 81 ILE HG13 H N N 82 ILE HG21 H N N 83 ILE HG22 H N N 84 ILE HG23 H N N 85 ILE HD11 H N N 86 ILE HD12 H N N 87 ILE HD13 H N N 88 ILE HXT H N N 89 MH6 N N N N 90 MH6 CA C N N 91 MH6 C C N N 92 MH6 CB C N N 93 MH6 OG O N N 94 MH6 O O N N 95 MH6 OXT O N N 96 MH6 H H N N 97 MH6 HB2 H N N 98 MH6 HB3 H N N 99 MH6 HXT H N N 100 MH6 HG H N N 101 NH2 N N N N 102 NH2 HN1 H N N 103 NH2 HN2 H N N 104 QUA O12 O N N 105 QUA C11 C N N 106 QUA C2 C Y N 107 QUA N1 N Y N 108 QUA C3 C Y N 109 QUA C9 C Y N 110 QUA C4 C Y N 111 QUA C8 C N S 112 QUA C10 C Y N 113 QUA O16 O N N 114 QUA C7 C N N 115 QUA C13 C N S 116 QUA O15 O N N 117 QUA C5 C N N 118 QUA C14 C N N 119 QUA C6 C N N 120 QUA "O1'" O N N 121 QUA HC3 H N N 122 QUA HC8 H N N 123 QUA H16 H N N 124 QUA HC71 H N N 125 QUA HC72 H N N 126 QUA H13 H N N 127 QUA H15 H N N 128 QUA HC5 H N N 129 QUA H141 H N N 130 QUA H142 H N N 131 QUA H143 H N N 132 QUA HC6 H N N 133 QUA "H1'" H N N 134 SER N N N N 135 SER CA C N S 136 SER C C N N 137 SER O O N N 138 SER CB C N N 139 SER OG O N N 140 SER OXT O N N 141 SER H H N N 142 SER H2 H N N 143 SER HA H N N 144 SER HB2 H N N 145 SER HB3 H N N 146 SER HG H N N 147 SER HXT H N N 148 THR N N N N 149 THR CA C N S 150 THR C C N N 151 THR O O N N 152 THR CB C N R 153 THR OG1 O N N 154 THR CG2 C N N 155 THR OXT O N N 156 THR H H N N 157 THR H2 H N N 158 THR HA H N N 159 THR HB H N N 160 THR HG1 H N N 161 THR HG21 H N N 162 THR HG22 H N N 163 THR HG23 H N N 164 THR HXT H N N 165 TS9 N N N N 166 TS9 CA C N S 167 TS9 C C N N 168 TS9 CB C N S 169 TS9 OG3 O N N 170 TS9 CG2 C N N 171 TS9 CG1 C N R 172 TS9 OD2 O N N 173 TS9 CD1 C N N 174 TS9 OXT O N N 175 TS9 O O N N 176 TS9 H H N N 177 TS9 H2 H N N 178 TS9 HA H N N 179 TS9 HXT H N N 180 TS9 HG3 H N N 181 TS9 HG21 H N N 182 TS9 HG22 H N N 183 TS9 HG23 H N N 184 TS9 HG1 H N N 185 TS9 HD2 H N N 186 TS9 HD11 H N N 187 TS9 HD12 H N N 188 TS9 HD13 H N N 189 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 BB9 N CA sing N N 13 BB9 CA C sing N N 14 BB9 CA CB doub N N 15 BB9 C O doub N N 16 BB9 C OXT sing N Z 17 BB9 CB SG sing N N 18 BB9 N H sing N N 19 BB9 N H2 sing N N 20 BB9 CB HB sing N N 21 BB9 OXT HXT sing N N 22 BB9 SG HG sing N N 23 DBU N CA sing N N 24 DBU N H sing N N 25 DBU N H2 sing N N 26 DBU CA CB doub N Z 27 DBU CA C sing N N 28 DBU CB CG sing N N 29 DBU CB HB sing N N 30 DBU CG HG1 sing N N 31 DBU CG HG2 sing N N 32 DBU CG HG3 sing N N 33 DBU C O doub N N 34 DBU C OXT sing N N 35 DBU OXT HXT sing N N 36 DCY N CA sing N N 37 DCY N H sing N N 38 DCY N H2 sing N N 39 DCY CA C sing N N 40 DCY CA CB sing N N 41 DCY CA HA sing N N 42 DCY C O doub N N 43 DCY C OXT sing N N 44 DCY CB SG sing N N 45 DCY CB HB2 sing N N 46 DCY CB HB3 sing N N 47 DCY SG HG sing N N 48 DCY OXT HXT sing N N 49 DHA N CA sing N N 50 DHA N H sing N N 51 DHA N H2 sing N N 52 DHA CA CB doub N N 53 DHA CA C sing N N 54 DHA CB HB1 sing N N 55 DHA CB HB2 sing N N 56 DHA C O doub N N 57 DHA C OXT sing N N 58 DHA OXT HXT sing N N 59 HOH O H1 sing N N 60 HOH O H2 sing N N 61 ILE N CA sing N N 62 ILE N H sing N N 63 ILE N H2 sing N N 64 ILE CA C sing N N 65 ILE CA CB sing N N 66 ILE CA HA sing N N 67 ILE C O doub N N 68 ILE C OXT sing N N 69 ILE CB CG1 sing N N 70 ILE CB CG2 sing N N 71 ILE CB HB sing N N 72 ILE CG1 CD1 sing N N 73 ILE CG1 HG12 sing N N 74 ILE CG1 HG13 sing N N 75 ILE CG2 HG21 sing N N 76 ILE CG2 HG22 sing N N 77 ILE CG2 HG23 sing N N 78 ILE CD1 HD11 sing N N 79 ILE CD1 HD12 sing N N 80 ILE CD1 HD13 sing N N 81 ILE OXT HXT sing N N 82 MH6 N CA doub N N 83 MH6 CA C sing N N 84 MH6 CA CB sing N N 85 MH6 C O doub N N 86 MH6 C OXT sing N N 87 MH6 CB OG sing N N 88 MH6 N H sing N N 89 MH6 CB HB2 sing N N 90 MH6 CB HB3 sing N N 91 MH6 OXT HXT sing N N 92 MH6 OG HG sing N N 93 NH2 N HN1 sing N N 94 NH2 N HN2 sing N N 95 QUA O12 C11 doub N N 96 QUA C11 C2 sing N N 97 QUA C11 "O1'" sing N N 98 QUA C2 N1 doub Y N 99 QUA C2 C3 sing Y N 100 QUA N1 C9 sing Y N 101 QUA C3 C4 doub Y N 102 QUA C3 HC3 sing N N 103 QUA C9 C8 sing N N 104 QUA C9 C10 doub Y N 105 QUA C4 C10 sing Y N 106 QUA C4 C13 sing N N 107 QUA C8 O16 sing N N 108 QUA C8 C7 sing N N 109 QUA C8 HC8 sing N N 110 QUA C10 C5 sing N N 111 QUA O16 H16 sing N N 112 QUA C7 C6 sing N N 113 QUA C7 HC71 sing N N 114 QUA C7 HC72 sing N N 115 QUA C13 O15 sing N N 116 QUA C13 C14 sing N N 117 QUA C13 H13 sing N N 118 QUA O15 H15 sing N N 119 QUA C5 C6 doub N N 120 QUA C5 HC5 sing N N 121 QUA C14 H141 sing N N 122 QUA C14 H142 sing N N 123 QUA C14 H143 sing N N 124 QUA C6 HC6 sing N N 125 QUA "O1'" "H1'" sing N N 126 SER N CA sing N N 127 SER N H sing N N 128 SER N H2 sing N N 129 SER CA C sing N N 130 SER CA CB sing N N 131 SER CA HA sing N N 132 SER C O doub N N 133 SER C OXT sing N N 134 SER CB OG sing N N 135 SER CB HB2 sing N N 136 SER CB HB3 sing N N 137 SER OG HG sing N N 138 SER OXT HXT sing N N 139 THR N CA sing N N 140 THR N H sing N N 141 THR N H2 sing N N 142 THR CA C sing N N 143 THR CA CB sing N N 144 THR CA HA sing N N 145 THR C O doub N N 146 THR C OXT sing N N 147 THR CB OG1 sing N N 148 THR CB CG2 sing N N 149 THR CB HB sing N N 150 THR OG1 HG1 sing N N 151 THR CG2 HG21 sing N N 152 THR CG2 HG22 sing N N 153 THR CG2 HG23 sing N N 154 THR OXT HXT sing N N 155 TS9 N CA sing N N 156 TS9 CA C sing N N 157 TS9 CA CB sing N N 158 TS9 C OXT sing N N 159 TS9 C O doub N N 160 TS9 CB OG3 sing N N 161 TS9 CB CG2 sing N N 162 TS9 CB CG1 sing N N 163 TS9 CG1 OD2 sing N N 164 TS9 CG1 CD1 sing N N 165 TS9 N H sing N N 166 TS9 N H2 sing N N 167 TS9 CA HA sing N N 168 TS9 OXT HXT sing N N 169 TS9 OG3 HG3 sing N N 170 TS9 CG2 HG21 sing N N 171 TS9 CG2 HG22 sing N N 172 TS9 CG2 HG23 sing N N 173 TS9 CG1 HG1 sing N N 174 TS9 OD2 HD2 sing N N 175 TS9 CD1 HD11 sing N N 176 TS9 CD1 HD12 sing N N 177 TS9 CD1 HD13 sing N N 178 # _em_3d_crystal_entity.angle_alpha 90 _em_3d_crystal_entity.angle_beta 90 _em_3d_crystal_entity.angle_gamma 90 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.length_a 26.47 _em_3d_crystal_entity.length_b 26.47 _em_3d_crystal_entity.length_c 27.29 _em_3d_crystal_entity.space_group_name 'P 4(3) 2(1) 2' _em_3d_crystal_entity.space_group_num 96 # _em_crystal_formation.atmosphere 'Standard temperature and pressure' _em_crystal_formation.details ;Thiostrepton (30 mg) was dissolved in 1.95 mL 24:1 Chloroform:Isoamyl Alcohol. 390 uL of Ethanol and 195 uL of 100% Glycerol were each mixed into the solution, and tetragonal crystals of various sizes (including microcrystals) formed after approximately 2 days of slow evaporation of the solvent under ambient conditions. ; _em_crystal_formation.id 1 _em_crystal_formation.instrument ? _em_crystal_formation.lipid_mixture ? _em_crystal_formation.lipid_protein_ratio ? _em_crystal_formation.specimen_id 1 _em_crystal_formation.temperature 293 _em_crystal_formation.time 2 _em_crystal_formation.time_unit DAY # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 98.6 _em_diffraction_shell.high_resolution 1.5 _em_diffraction_shell.id 1 _em_diffraction_shell.low_resolution 1.6 _em_diffraction_shell.multiplicity 7.4 _em_diffraction_shell.num_structure_factors 289 _em_diffraction_shell.phase_residual 38 # _em_diffraction_stats.details ? _em_diffraction_stats.fourier_space_coverage 99.3 _em_diffraction_stats.high_resolution 1.5 _em_diffraction_stats.id 1 _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.num_intensities_measured 12605 _em_diffraction_stats.num_structure_factors 1738 _em_diffraction_stats.overall_phase_error ? _em_diffraction_stats.overall_phase_residual ? _em_diffraction_stats.phase_error_rejection_criteria 'Phases were determined by molecular replacement and cross-validated by free R-value during refinement' _em_diffraction_stats.r_merge 20.4 _em_diffraction_stats.r_sym ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 1.81 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 146537 _em_entity_assembly_naturalsource.organism 'Streptomyces azureus' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_image_processing.details ;Images were gain corrected and binned at 4k x 4k pixels. A pedestal of 1 pixel value was applied to each pixel during conversion to SMV file format. ; _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 3.33 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 0.0333 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'DIRECT ELECTRON APOLLO (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images 100 _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'IMAGE ACQUISITION' ? 1 ? ? 1 ? ? MASKING ? 2 ? ? ? ? ? 'CTF CORRECTION' ? 3 1 ? ? ? ? 'LAYERLINE INDEXING' ? 4 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 5 ? ? ? ? ? 'MODEL FITTING' ? 6 ? 1 ? ? ? OTHER ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? 1 ? PHENIX '(1.20.1_4487: ???)' 'MOLECULAR REPLACEMENT' ? 9 1 ? ? MOLREP ? 'LATTICE DISTORTION CORRECTION' ? 10 1 ? ? ? ? 'SYMMETRY DETERMINATION' ? 11 1 ? ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied NO # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 1 'Department of Energy (DOE, United States)' 'United States' ? 2 'National Science Foundation (NSF, United States)' 'United States' ? 3 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1E9W _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9CQ0 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.037779 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.037779 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.036643 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 . QUA A 1 1 ? 6.180 15.262 3.265 1.00 11.10 ? 1 QUA A O12 1 HETATM 2 C C11 . QUA A 1 1 ? 5.634 16.382 3.263 1.00 10.36 ? 1 QUA A C11 1 HETATM 3 C C2 . QUA A 1 1 ? 4.146 16.582 3.043 1.00 10.82 ? 1 QUA A C2 1 HETATM 4 N N1 . QUA A 1 1 ? 3.648 17.825 3.130 1.00 10.56 ? 1 QUA A N1 1 HETATM 5 C C3 . QUA A 1 1 ? 3.329 15.492 2.740 1.00 10.88 ? 1 QUA A C3 1 HETATM 6 C C9 . QUA A 1 1 ? 2.316 18.024 2.934 1.00 10.75 ? 1 QUA A C9 1 HETATM 7 C C4 . QUA A 1 1 ? 1.995 15.693 2.561 1.00 11.71 ? 1 QUA A C4 1 HETATM 8 C C8 . QUA A 1 1 ? 1.766 19.470 3.040 1.00 11.00 ? 1 QUA A C8 1 HETATM 9 C C10 . QUA A 1 1 ? 1.491 16.976 2.650 1.00 11.10 ? 1 QUA A C10 1 HETATM 10 O O16 . QUA A 1 1 ? 1.917 20.072 1.748 1.00 11.13 ? 1 QUA A O16 1 HETATM 11 C C7 . QUA A 1 1 ? 0.279 19.682 3.462 1.00 12.19 ? 1 QUA A C7 1 HETATM 12 C C13 . QUA A 1 1 ? 1.079 14.508 2.236 1.00 13.01 ? 1 QUA A C13 1 HETATM 13 O O15 . QUA A 1 1 ? 1.849 13.439 1.783 1.00 17.80 ? 1 QUA A O15 1 HETATM 14 C C5 . QUA A 1 1 ? -0.004 17.263 2.437 1.00 12.51 ? 1 QUA A C5 1 HETATM 15 C C14 . QUA A 1 1 ? 0.299 14.072 3.474 1.00 18.00 ? 1 QUA A C14 1 HETATM 16 C C6 . QUA A 1 1 ? -0.604 18.641 2.737 1.00 12.14 ? 1 QUA A C6 1 ATOM 17 N N . ILE A 1 2 ? 0.008 19.622 4.871 1.00 11.81 ? 2 ILE A N 1 ATOM 18 C CA . ILE A 1 2 ? 0.785 20.617 5.614 1.00 12.01 ? 2 ILE A CA 1 ATOM 19 C C . ILE A 1 2 ? 2.024 19.986 6.267 1.00 11.53 ? 2 ILE A C 1 ATOM 20 O O . ILE A 1 2 ? 2.925 20.696 6.710 1.00 12.89 ? 2 ILE A O 1 ATOM 21 C CB . ILE A 1 2 ? -0.059 21.347 6.705 1.00 13.35 ? 2 ILE A CB 1 ATOM 22 C CG1 . ILE A 1 2 ? -0.724 20.349 7.647 1.00 16.38 ? 2 ILE A CG1 1 ATOM 23 C CG2 . ILE A 1 2 ? -1.081 22.284 6.044 1.00 14.30 ? 2 ILE A CG2 1 ATOM 24 C CD1 . ILE A 1 2 ? -1.460 21.008 8.847 1.00 25.80 ? 2 ILE A CD1 1 ATOM 25 N N . ALA A 1 3 ? 2.056 18.656 6.342 1.00 11.54 ? 3 ALA A N 1 ATOM 26 C CA . ALA A 1 3 ? 3.225 17.931 6.864 1.00 12.50 ? 3 ALA A CA 1 ATOM 27 C C . ALA A 1 3 ? 3.197 16.445 6.462 1.00 11.38 ? 3 ALA A C 1 ATOM 28 O O . ALA A 1 3 ? 2.143 15.898 6.145 1.00 12.32 ? 3 ALA A O 1 ATOM 29 C CB . ALA A 1 3 ? 3.318 18.057 8.392 1.00 15.27 ? 3 ALA A CB 1 HETATM 30 N N . DHA A 1 4 ? 4.394 15.851 6.472 1.00 10.54 ? 4 DHA A N 1 HETATM 31 C CA . DHA A 1 4 ? 4.676 14.550 6.296 1.00 10.53 ? 4 DHA A CA 1 HETATM 32 C CB . DHA A 1 4 ? 3.866 13.709 5.671 1.00 11.12 ? 4 DHA A CB 1 HETATM 33 C C . DHA A 1 4 ? 5.991 14.402 5.956 1.00 10.03 ? 4 DHA A C 1 HETATM 34 O O . DHA A 1 4 ? 6.728 15.376 6.099 1.00 10.85 ? 4 DHA A O 1 ATOM 35 N N . ALA A 1 5 ? 6.434 13.230 5.499 1.00 8.80 ? 5 ALA A N 1 ATOM 36 C CA . ALA A 1 5 ? 7.789 13.114 4.951 1.00 8.97 ? 5 ALA A CA 1 ATOM 37 C C . ALA A 1 5 ? 7.694 12.555 3.536 1.00 9.43 ? 5 ALA A C 1 ATOM 38 O O . ALA A 1 5 ? 7.135 11.481 3.358 1.00 10.95 ? 5 ALA A O 1 ATOM 39 C CB . ALA A 1 5 ? 8.668 12.194 5.816 1.00 9.96 ? 5 ALA A CB 1 ATOM 40 N N . SER A 1 6 ? 8.263 13.264 2.563 1.00 10.93 ? 6 SER A N 1 ATOM 41 C CA . SER A 1 6 ? 8.234 12.882 1.145 1.00 10.83 ? 6 SER A CA 1 ATOM 42 C C . SER A 1 6 ? 6.836 12.886 0.603 1.00 11.67 ? 6 SER A C 1 ATOM 43 C CB . SER A 1 6 ? 8.805 11.477 0.906 1.00 11.75 ? 6 SER A CB 1 HETATM 44 N N . BB9 A 1 7 ? 6.253 13.994 0.180 1.00 9.97 ? 7 BB9 A N 1 HETATM 45 C CA . BB9 A 1 7 ? 4.983 13.813 -0.231 1.00 10.76 ? 7 BB9 A CA 1 HETATM 46 C C . BB9 A 1 7 ? 4.078 14.935 -0.674 1.00 10.47 ? 7 BB9 A C 1 HETATM 47 O O . BB9 A 1 7 ? 2.834 14.808 -0.674 1.00 11.82 ? 7 BB9 A O 1 HETATM 48 C CB . BB9 A 1 7 ? 4.560 12.574 -0.009 1.00 14.75 ? 7 BB9 A CB 1 HETATM 49 S SG . BB9 A 1 7 ? 5.786 11.555 0.571 1.00 15.26 ? 7 BB9 A SG 1 ATOM 50 N N . THR A 1 8 ? 4.712 16.032 -1.058 1.00 11.23 ? 8 THR A N 1 ATOM 51 C CA . THR A 1 8 ? 3.971 17.206 -1.465 1.00 11.27 ? 8 THR A CA 1 ATOM 52 C C . THR A 1 8 ? 4.806 17.922 -2.483 1.00 11.04 ? 8 THR A C 1 ATOM 53 O O . THR A 1 8 ? 5.940 17.535 -2.760 1.00 13.20 ? 8 THR A O 1 ATOM 54 C CB . THR A 1 8 ? 3.661 18.117 -0.275 1.00 10.73 ? 8 THR A CB 1 ATOM 55 O OG1 . THR A 1 8 ? 2.619 19.046 -0.612 1.00 11.27 ? 8 THR A OG1 1 ATOM 56 C CG2 . THR A 1 8 ? 4.916 18.848 0.191 1.00 11.54 ? 8 THR A CG2 1 HETATM 57 N N . DBU A 1 9 ? 4.231 18.970 -3.043 1.00 11.55 ? 9 DBU A N 1 HETATM 58 C CA . DBU A 1 9 ? 4.893 19.740 -3.986 1.00 12.12 ? 9 DBU A CA 1 HETATM 59 C CB . DBU A 1 9 ? 5.339 19.364 -5.196 1.00 14.75 ? 9 DBU A CB 1 HETATM 60 C CG . DBU A 1 9 ? 5.390 18.010 -5.753 1.00 16.39 ? 9 DBU A CG 1 HETATM 61 C C . DBU A 1 9 ? 4.959 21.230 -3.766 1.00 12.36 ? 9 DBU A C 1 HETATM 62 N N . DCY A 1 10 ? 4.548 21.737 -2.610 1.00 10.54 ? 10 DCY A N 1 HETATM 63 C CA . DCY A 1 10 ? 4.441 23.177 -2.565 1.00 12.25 ? 10 DCY A CA 1 HETATM 64 C C . DCY A 1 10 ? 4.840 23.813 -1.258 1.00 12.28 ? 10 DCY A C 1 HETATM 65 O O . DCY A 1 10 ? 5.050 25.016 -1.191 1.00 20.94 ? 10 DCY A O 1 HETATM 66 C CB . DCY A 1 10 ? 5.311 23.704 -3.715 1.00 16.04 ? 10 DCY A CB 1 HETATM 67 S SG . DCY A 1 10 ? 5.456 22.359 -4.942 1.00 13.24 ? 10 DCY A SG 1 HETATM 68 N N . TS9 A 1 11 ? 4.913 23.012 -0.208 1.00 11.88 ? 11 TS9 A N 1 HETATM 69 C CA . TS9 A 1 11 ? 5.243 23.578 1.066 1.00 11.60 ? 11 TS9 A CA 1 HETATM 70 C C . TS9 A 1 11 ? 6.672 23.220 1.450 1.00 11.07 ? 11 TS9 A C 1 HETATM 71 C CB . TS9 A 1 11 ? 4.234 23.152 2.165 1.00 11.43 ? 11 TS9 A CB 1 HETATM 72 O OG3 . TS9 A 1 11 ? 4.031 21.754 2.191 1.00 11.05 ? 11 TS9 A OG3 1 HETATM 73 C CG2 . TS9 A 1 11 ? 4.805 23.574 3.524 1.00 12.79 ? 11 TS9 A CG2 1 HETATM 74 C CG1 . TS9 A 1 11 ? 2.909 23.887 1.857 1.00 13.92 ? 11 TS9 A CG1 1 HETATM 75 O OD2 . TS9 A 1 11 ? 3.109 25.291 1.892 1.00 19.61 ? 11 TS9 A OD2 1 HETATM 76 C CD1 . TS9 A 1 11 ? 1.791 23.491 2.798 1.00 15.25 ? 11 TS9 A CD1 1 HETATM 77 N N . BB9 A 1 12 ? 7.035 21.956 1.597 1.00 9.74 ? 12 BB9 A N 1 HETATM 78 C CA . BB9 A 1 12 ? 8.345 21.720 1.837 1.00 10.31 ? 12 BB9 A CA 1 HETATM 79 C C . BB9 A 1 12 ? 8.930 20.382 2.238 1.00 10.21 ? 12 BB9 A C 1 HETATM 80 O O . BB9 A 1 12 ? 10.154 20.256 2.411 1.00 11.31 ? 12 BB9 A O 1 HETATM 81 C CB . BB9 A 1 12 ? 9.057 22.841 1.884 1.00 11.89 ? 12 BB9 A CB 1 HETATM 82 S SG . BB9 A 1 12 ? 8.095 24.167 1.469 1.00 13.35 ? 12 BB9 A SG 1 ATOM 83 N N . THR A 1 13 ? 8.068 19.395 2.393 1.00 10.03 ? 13 THR A N 1 ATOM 84 C CA . THR A 1 13 ? 8.475 18.074 2.826 1.00 9.67 ? 13 THR A CA 1 ATOM 85 C C . THR A 1 13 ? 8.422 17.212 1.597 1.00 9.66 ? 13 THR A C 1 ATOM 86 C CB . THR A 1 13 ? 7.556 17.531 3.920 1.00 9.96 ? 13 THR A CB 1 ATOM 87 O OG1 . THR A 1 13 ? 6.199 17.614 3.476 1.00 9.53 ? 13 THR A OG1 1 ATOM 88 C CG2 . THR A 1 13 ? 7.684 18.372 5.176 1.00 10.50 ? 13 THR A CG2 1 HETATM 89 N N . BB9 A 1 14 ? 8.848 15.965 1.648 1.00 10.20 ? 14 BB9 A N 1 HETATM 90 C CA . BB9 A 1 14 ? 8.853 15.276 0.483 1.00 10.31 ? 14 BB9 A CA 1 HETATM 91 C C . BB9 A 1 14 ? 9.213 13.797 0.478 1.00 10.98 ? 14 BB9 A C 1 HETATM 92 C CB . BB9 A 1 14 ? 8.701 16.124 -0.561 1.00 10.50 ? 14 BB9 A CB 1 HETATM 93 S SG . BB9 A 1 14 ? 8.386 17.724 -0.014 1.00 10.66 ? 14 BB9 A SG 1 HETATM 94 N N . MH6 A 1 15 ? 10.463 13.614 0.884 1.00 11.19 ? 15 MH6 A N 1 HETATM 95 C CA . MH6 A 1 15 ? 10.894 12.546 1.369 1.00 11.55 ? 15 MH6 A CA 1 HETATM 96 C C . MH6 A 1 15 ? 12.323 12.612 1.799 1.00 13.68 ? 15 MH6 A C 1 HETATM 97 C CB . MH6 A 1 15 ? 10.090 11.279 1.627 1.00 12.61 ? 15 MH6 A CB 1 HETATM 98 N N . BB9 A 1 16 ? 12.852 11.542 2.359 1.00 14.17 ? 16 BB9 A N 1 HETATM 99 C CA . BB9 A 1 16 ? 14.136 11.691 2.757 1.00 15.96 ? 16 BB9 A CA 1 HETATM 100 C C . BB9 A 1 16 ? 14.925 10.560 3.438 1.00 16.05 ? 16 BB9 A C 1 HETATM 101 O O . BB9 A 1 16 ? 16.064 10.806 3.887 1.00 19.17 ? 16 BB9 A O 1 HETATM 102 C CB . BB9 A 1 16 ? 14.590 12.927 2.472 1.00 17.65 ? 16 BB9 A CB 1 HETATM 103 S SG . BB9 A 1 16 ? 13.423 13.907 1.716 1.00 19.07 ? 16 BB9 A SG 1 HETATM 104 N N . DHA A 1 17 ? 14.292 9.396 3.564 1.00 16.54 ? 17 DHA A N 1 HETATM 105 C CA . DHA A 1 17 ? 14.888 8.244 3.904 1.00 18.35 ? 17 DHA A CA 1 HETATM 106 C CB . DHA A 1 17 ? 15.549 8.138 5.044 1.00 31.51 ? 17 DHA A CB 1 HETATM 107 C C . DHA A 1 17 ? 14.198 7.110 3.646 1.00 18.33 ? 17 DHA A C 1 HETATM 108 O O . DHA A 1 17 ? 13.477 7.122 2.636 1.00 17.65 ? 17 DHA A O 1 HETATM 109 N N . DHA A 1 18 ? 14.294 6.110 4.538 1.00 22.96 ? 18 DHA A N 1 HETATM 110 C CA . DHA A 1 18 ? 13.768 4.859 4.441 1.00 18.87 ? 18 DHA A CA 1 HETATM 111 C CB . DHA A 1 18 ? 12.867 4.653 3.494 1.00 19.00 ? 18 DHA A CB 1 HETATM 112 C C . DHA A 1 18 ? 14.510 3.727 4.503 0.57 14.21 ? 18 DHA A C 1 HETATM 113 O O . DHA A 1 18 ? 15.718 3.798 4.679 0.67 23.20 ? 18 DHA A O 1 HETATM 114 N N . NH2 A 1 19 ? 13.962 2.532 4.242 0.37 16.59 ? 19 NH2 A N 1 HETATM 115 O O . HOH B 2 . ? 5.434 21.216 6.929 0.41 13.18 ? 2001 HOH A O 1 HETATM 116 O O . HOH B 2 . ? 5.188 20.215 4.017 1.00 10.88 ? 2002 HOH A O 1 # loop_ _atom_site_anisotrop.id _atom_site_anisotrop.type_symbol _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_alt_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_seq_id _atom_site_anisotrop.pdbx_PDB_ins_code _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id 1 O O12 . QUA A 1 ? 0.1677 0.1269 0.1272 0.0015 -0.0080 0.0018 1 QUA A O12 2 C C11 . QUA A 1 ? 0.1463 0.1325 0.1150 -0.0118 0.0000 0.0064 1 QUA A C11 3 C C2 . QUA A 1 ? 0.1468 0.1490 0.1153 -0.0079 0.0002 0.0030 1 QUA A C2 4 N N1 . QUA A 1 ? 0.1413 0.1374 0.1226 -0.0058 -0.0048 0.0017 1 QUA A N1 5 C C3 . QUA A 1 ? 0.1375 0.1544 0.1217 -0.0193 0.0036 -0.0001 1 QUA A C3 6 C C9 . QUA A 1 ? 0.1353 0.1634 0.1100 -0.0098 -0.0019 0.0006 1 QUA A C9 7 C C4 . QUA A 1 ? 0.1506 0.1614 0.1329 -0.0271 0.0031 -0.0072 1 QUA A C4 8 C C8 . QUA A 1 ? 0.1264 0.1645 0.1273 0.0011 0.0061 -0.0006 1 QUA A C8 9 C C10 . QUA A 1 ? 0.1371 0.1683 0.1165 -0.0210 0.0096 -0.0040 1 QUA A C10 10 O O16 . QUA A 1 ? 0.1429 0.1596 0.1206 0.0073 0.0006 -0.0024 1 QUA A O16 11 C C7 . QUA A 1 ? 0.1306 0.2060 0.1267 -0.0003 -0.0002 -0.0240 1 QUA A C7 12 C C13 . QUA A 1 ? 0.1689 0.1724 0.1531 -0.0480 0.0107 -0.0195 1 QUA A C13 13 O O15 . QUA A 1 ? 0.2290 0.1747 0.2727 -0.0504 0.0234 -0.0595 1 QUA A O15 14 C C5 . QUA A 1 ? 0.1351 0.2165 0.1239 -0.0131 0.0126 -0.0214 1 QUA A C5 15 C C14 . QUA A 1 ? 0.2218 0.2732 0.1889 -0.0961 0.0151 0.0170 1 QUA A C14 16 C C6 . QUA A 1 ? 0.1338 0.2099 0.1178 -0.0192 0.0022 -0.0054 1 QUA A C6 17 N N . ILE A 2 ? 0.1417 0.1724 0.1345 0.0057 0.0003 -0.0048 2 ILE A N 18 C CA . ILE A 2 ? 0.1443 0.1762 0.1359 0.0162 -0.0092 -0.0227 2 ILE A CA 19 C C . ILE A 2 ? 0.1417 0.1554 0.1409 0.0108 -0.0096 -0.0157 2 ILE A C 20 O O . ILE A 2 ? 0.1619 0.1551 0.1729 0.0209 -0.0283 -0.0241 2 ILE A O 21 C CB . ILE A 2 ? 0.1602 0.1751 0.1719 0.0178 0.0059 -0.0175 2 ILE A CB 22 C CG1 . ILE A 2 ? 0.2234 0.2032 0.1958 0.0015 0.0421 -0.0016 2 ILE A CG1 23 C CG2 . ILE A 2 ? 0.1335 0.1856 0.2241 0.0149 -0.0225 -0.0136 2 ILE A CG2 24 C CD1 . ILE A 2 ? 0.3554 0.4189 0.2061 -0.0095 0.0797 -0.0507 2 ILE A CD1 25 N N . ALA A 3 ? 0.1523 0.1578 0.1282 0.0175 -0.0091 -0.0161 3 ALA A N 26 C CA . ALA A 3 ? 0.1735 0.1459 0.1553 0.0351 -0.0303 -0.0289 3 ALA A CA 27 C C . ALA A 3 ? 0.1575 0.1443 0.1305 0.0002 0.0006 -0.0131 3 ALA A C 28 O O . ALA A 3 ? 0.1611 0.1582 0.1486 -0.0073 0.0007 -0.0230 3 ALA A O 29 C CB . ALA A 3 ? 0.2445 0.1803 0.1554 0.0705 -0.0527 -0.0368 3 ALA A CB 30 N N . DHA A 4 ? 0.1604 0.1196 0.1206 0.0200 -0.0012 -0.0123 4 DHA A N 31 C CA . DHA A 4 ? 0.1656 0.1193 0.1153 0.0088 0.0001 0.0083 4 DHA A CA 32 C CB . DHA A 4 ? 0.1829 0.1205 0.1192 -0.0112 -0.0123 0.0110 4 DHA A CB 33 C C . DHA A 4 ? 0.1595 0.1147 0.1070 0.0159 -0.0060 0.0041 4 DHA A C 34 O O . DHA A 4 ? 0.1600 0.1218 0.1303 0.0084 -0.0138 -0.0017 4 DHA A O 35 N N . ALA A 5 ? 0.1400 0.0965 0.0978 0.0064 0.0095 0.0032 5 ALA A N 36 C CA . ALA A 5 ? 0.1385 0.1113 0.0907 0.0171 0.0154 0.0049 5 ALA A CA 37 C C . ALA A 5 ? 0.1450 0.1037 0.1095 0.0080 0.0170 -0.0018 5 ALA A C 38 O O . ALA A 5 ? 0.2101 0.0977 0.1081 -0.0086 0.0242 -0.0067 5 ALA A O 39 C CB . ALA A 5 ? 0.1539 0.1149 0.1096 0.0205 0.0177 0.0069 5 ALA A CB 40 N N . SER A 6 ? 0.1714 0.1324 0.1113 0.0077 0.0073 -0.0050 6 SER A N 41 C CA . SER A 6 ? 0.1628 0.1329 0.1157 0.0059 0.0003 -0.0054 6 SER A CA 42 C C . SER A 6 ? 0.1637 0.1389 0.1405 -0.0151 -0.0087 0.0058 6 SER A C 43 C CB . SER A 6 ? 0.1880 0.1332 0.1250 0.0134 0.0052 -0.0177 6 SER A CB 44 N N . BB9 A 7 ? 0.1439 0.1307 0.1042 -0.0072 0.0077 -0.0094 7 BB9 A N 45 C CA . BB9 A 7 ? 0.1441 0.1443 0.1204 -0.0133 -0.0019 0.0034 7 BB9 A CA 46 C C . BB9 A 7 ? 0.1261 0.1611 0.1107 -0.0183 0.0102 0.0026 7 BB9 A C 47 O O . BB9 A 7 ? 0.1310 0.1714 0.1465 -0.0215 -0.0013 -0.0126 7 BB9 A O 48 C CB . BB9 A 7 ? 0.1804 0.1440 0.2361 -0.0297 -0.0398 0.0042 7 BB9 A CB 49 S SG . BB9 A 7 ? 0.1856 0.1377 0.2563 -0.0322 -0.0208 0.0320 7 BB9 A SG 50 N N . THR A 8 ? 0.1505 0.1514 0.1249 -0.0020 0.0014 -0.0100 8 THR A N 51 C CA . THR A 8 ? 0.1427 0.1603 0.1253 -0.0023 0.0039 0.0006 8 THR A CA 52 C C . THR A 8 ? 0.1327 0.1733 0.1134 0.0034 -0.0053 -0.0037 8 THR A C 53 O O . THR A 8 ? 0.1647 0.1919 0.1449 0.0230 0.0115 0.0181 8 THR A O 54 C CB . THR A 8 ? 0.1221 0.1656 0.1199 0.0072 -0.0084 -0.0003 8 THR A CB 55 O OG1 . THR A 8 ? 0.1303 0.1649 0.1331 0.0015 -0.0088 -0.0006 8 THR A OG1 56 C CG2 . THR A 8 ? 0.1295 0.1727 0.1363 -0.0045 -0.0041 -0.0071 8 THR A CG2 57 N N . DBU A 9 ? 0.1321 0.1883 0.1187 -0.0002 -0.0107 0.0103 9 DBU A N 58 C CA . DBU A 9 ? 0.1364 0.1954 0.1288 0.0080 0.0003 0.0173 9 DBU A CA 59 C CB . DBU A 9 ? 0.1854 0.2396 0.1354 0.0431 0.0243 0.0269 9 DBU A CB 60 C CG . DBU A 9 ? 0.2435 0.2542 0.1252 0.0427 0.0220 -0.0101 9 DBU A CG 61 C C . DBU A 9 ? 0.1334 0.2027 0.1335 0.0085 -0.0159 0.0306 9 DBU A C 62 N N . DCY A 10 ? 0.1225 0.1642 0.1139 -0.0129 -0.0160 0.0221 10 DCY A N 63 C CA . DCY A 10 ? 0.1552 0.1679 0.1424 -0.0138 -0.0297 0.0244 10 DCY A CA 64 C C . DCY A 10 ? 0.1890 0.1304 0.1474 0.0051 -0.0058 0.0217 10 DCY A C 65 O O . DCY A 10 ? 0.4354 0.1819 0.1786 -0.0762 -0.0613 0.0312 10 DCY A O 66 C CB . DCY A 10 ? 0.2653 0.2048 0.1396 -0.0410 -0.0132 0.0585 10 DCY A CB 67 S SG . DCY A 10 ? 0.1534 0.2151 0.1345 -0.0118 -0.0006 0.0539 10 DCY A SG 68 N N . TS9 A 11 ? 0.1532 0.1531 0.1450 -0.0147 -0.0217 0.0101 11 TS9 A N 69 C CA . TS9 A 11 ? 0.1425 0.1390 0.1592 -0.0022 -0.0215 0.0042 11 TS9 A CA 70 C C . TS9 A 11 ? 0.1412 0.1366 0.1426 -0.0022 -0.0173 -0.0005 11 TS9 A C 71 C CB . TS9 A 11 ? 0.1387 0.1360 0.1595 0.0076 -0.0198 -0.0150 11 TS9 A CB 72 O OG3 . TS9 A 11 ? 0.1305 0.1397 0.1495 0.0026 -0.0141 -0.0063 11 TS9 A OG3 73 C CG2 . TS9 A 11 ? 0.1591 0.1568 0.1699 0.0058 -0.0200 -0.0213 11 TS9 A CG2 74 C CG1 . TS9 A 11 ? 0.1391 0.1570 0.2329 0.0157 -0.0256 -0.0107 11 TS9 A CG1 75 O OD2 . TS9 A 11 ? 0.1975 0.1622 0.3853 0.0256 -0.0025 0.0364 11 TS9 A OD2 76 C CD1 . TS9 A 11 ? 0.1381 0.2092 0.2319 0.0013 -0.0214 -0.0284 11 TS9 A CD1 77 N N . BB9 A 12 ? 0.1217 0.1180 0.1302 -0.0131 -0.0092 0.0049 12 BB9 A N 78 C CA . BB9 A 12 ? 0.1200 0.1390 0.1326 -0.0037 -0.0074 -0.0012 12 BB9 A CA 79 C C . BB9 A 12 ? 0.1237 0.1349 0.1292 -0.0068 -0.0090 0.0058 12 BB9 A C 80 O O . BB9 A 12 ? 0.1218 0.1411 0.1667 -0.0055 -0.0181 0.0053 12 BB9 A O 81 C CB . BB9 A 12 ? 0.1472 0.1406 0.1638 -0.0275 -0.0168 0.0135 12 BB9 A CB 82 S SG . BB9 A 12 ? 0.1563 0.1369 0.2140 -0.0244 -0.0310 0.0222 12 BB9 A SG 83 N N . THR A 13 ? 0.1289 0.1256 0.1266 -0.0063 -0.0051 0.0032 13 THR A N 84 C CA . THR A 13 ? 0.1102 0.1252 0.1319 0.0044 -0.0091 0.0058 13 THR A CA 85 C C . THR A 13 ? 0.1074 0.1301 0.1296 -0.0053 -0.0069 0.0047 13 THR A C 86 C CB . THR A 13 ? 0.1289 0.1274 0.1219 -0.0129 -0.0164 -0.0007 13 THR A CB 87 O OG1 . THR A 13 ? 0.1235 0.1205 0.1181 -0.0017 -0.0130 0.0009 13 THR A OG1 88 C CG2 . THR A 13 ? 0.1388 0.1373 0.1227 -0.0064 -0.0140 -0.0061 13 THR A CG2 89 N N . BB9 A 14 ? 0.1295 0.1328 0.1255 -0.0066 -0.0056 0.0037 14 BB9 A N 90 C CA . BB9 A 14 ? 0.1290 0.1413 0.1217 -0.0058 -0.0018 0.0005 14 BB9 A CA 91 C C . BB9 A 14 ? 0.1516 0.1504 0.1152 0.0003 0.0050 -0.0002 14 BB9 A C 92 C CB . BB9 A 14 ? 0.1262 0.1499 0.1229 -0.0076 0.0031 0.0051 14 BB9 A CB 93 S SG . BB9 A 14 ? 0.1232 0.1473 0.1346 -0.0058 -0.0046 0.0149 14 BB9 A SG 94 N N . MH6 A 15 ? 0.1463 0.1562 0.1227 0.0116 0.0029 -0.0164 15 MH6 A N 95 C CA . MH6 A 15 ? 0.1606 0.1546 0.1237 0.0293 -0.0016 -0.0299 15 MH6 A CA 96 C C . MH6 A 15 ? 0.1718 0.1749 0.1729 0.0582 -0.0100 -0.0469 15 MH6 A C 97 C CB . MH6 A 15 ? 0.1988 0.1348 0.1455 0.0328 -0.0055 -0.0210 15 MH6 A CB 98 N N . BB9 A 16 ? 0.1841 0.2053 0.1489 0.0786 -0.0216 -0.0504 16 BB9 A N 99 C CA . BB9 A 16 ? 0.1904 0.2306 0.1852 0.0723 -0.0459 -0.0545 16 BB9 A CA 100 C C . BB9 A 16 ? 0.1857 0.2211 0.2031 0.0787 -0.0641 -0.0838 16 BB9 A C 101 O O . BB9 A 16 ? 0.2174 0.2450 0.2660 0.0738 -0.0989 -0.0463 16 BB9 A O 102 C CB . BB9 A 16 ? 0.1832 0.2162 0.2713 0.0698 -0.0535 -0.0821 16 BB9 A CB 103 S SG . BB9 A 16 ? 0.1817 0.1800 0.3630 0.0388 -0.0937 -0.0916 16 BB9 A SG 104 N N . DHA A 17 ? 0.2175 0.2252 0.1858 0.0868 -0.0192 -0.0524 17 DHA A N 105 C CA . DHA A 17 ? 0.2768 0.2393 0.1814 0.1047 -0.0162 -0.0356 17 DHA A CA 106 C CB . DHA A 17 ? 0.5123 0.3178 0.3672 0.1666 -0.1927 -0.1164 17 DHA A CB 107 C C . DHA A 17 ? 0.2437 0.2188 0.2339 0.1032 0.0340 -0.0094 17 DHA A C 108 O O . DHA A 17 ? 0.2280 0.2393 0.2033 0.0492 0.0379 -0.0086 17 DHA A O 109 N N . DHA A 18 ? 0.2929 0.2200 0.3594 0.0818 -0.0472 0.0362 18 DHA A N 110 C CA . DHA A 18 ? 0.2795 0.2355 0.2019 0.0558 0.0048 0.0246 18 DHA A CA 111 C CB . DHA A 18 ? 0.2184 0.2665 0.2370 0.0745 0.0378 0.0342 18 DHA A CB 112 C C . DHA A 18 ? 0.1800 0.1893 0.1706 -0.0378 0.0032 0.0506 18 DHA A C 113 O O . DHA A 18 ? 0.3533 0.1665 0.3617 -0.0318 -0.1885 0.0318 18 DHA A O 114 N N . NH2 A 19 ? 0.1751 0.1946 0.2607 -0.0197 -0.0706 -0.0012 19 NH2 A N 115 O O . HOH B . ? 0.1547 0.1547 0.1914 0.0427 -0.0498 -0.0498 2001 HOH A O 116 O O . HOH B . ? 0.1303 0.1332 0.1498 0.0097 -0.0155 0.0058 2002 HOH A O #
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